Wall clock time and date at job start Tue Mar 31 2020 06:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 115.55252 * 2 1 4 4 C 1.34784 * 119.99876 * 294.58068 * 3 2 1 5 5 S 1.71194 * 119.99718 * 3.64302 * 4 3 2 6 6 N 1.34772 * 120.00038 * 183.63630 * 4 3 2 7 7 C 1.39961 * 119.99917 * 176.45432 * 6 4 3 8 8 C 1.38925 * 120.00253 * 43.29405 * 7 6 4 9 9 C 1.38008 * 119.99899 * 180.02562 * 8 7 6 10 10 C 1.38912 * 119.99945 * 359.97438 * 9 8 7 11 11 O 1.35783 * 119.99514 * 179.97438 * 10 9 8 12 12 C 1.34809 * 117.00127 * 353.41000 * 11 10 9 13 13 H 1.07997 * 119.99968 * 5.15008 * 12 11 10 14 14 C 1.38624 * 119.99992 * 185.15558 * 12 11 10 15 15 N 1.31579 * 119.99888 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00115 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.46867 * 90.00049 * 16 14 12 18 18 H 1.48498 * 109.47437 * 209.99938 * 16 14 12 19 19 H 1.48498 * 109.47377 * 330.00592 * 16 14 12 20 20 C 1.38915 * 120.00566 * 0.26391 * 10 9 8 21 21 C 1.37998 * 120.00119 * 359.48364 * 20 10 9 22 22 C 1.53001 * 117.49816 * 145.66780 * 2 1 3 23 23 C 1.53003 * 117.49942 * 214.32755 * 2 1 3 24 24 H 1.09007 * 109.47032 * 63.42392 * 1 2 3 25 25 H 1.08995 * 109.47377 * 183.42342 * 1 2 3 26 26 H 1.08997 * 109.46968 * 303.42550 * 1 2 3 27 27 H 0.96994 * 120.00564 * 114.58468 * 3 2 1 28 28 H 0.97002 * 120.00011 * 356.45219 * 6 4 3 29 29 H 1.08002 * 120.00320 * 359.97438 * 8 7 6 30 30 H 1.07995 * 120.00507 * 179.97438 * 9 8 7 31 31 H 0.97006 * 119.99936 * 180.02562 * 15 14 12 32 32 H 1.07997 * 119.99511 * 179.71744 * 20 10 9 33 33 H 1.07999 * 120.00623 * 180.23441 * 21 20 10 34 34 H 1.08998 * 117.50149 * 215.00224 * 22 2 1 35 35 H 1.09003 * 117.49528 * 0.02562 * 22 2 1 36 36 H 1.09007 * 117.49606 * 359.97438 * 23 2 1 37 37 H 1.09001 * 117.49868 * 145.00007 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1619 1.3217 0.0000 4 6 2.0145 2.1391 -1.0615 5 16 1.0133 1.6718 -2.3691 6 7 2.6552 3.3243 -1.0934 7 6 2.5618 4.1401 -2.2269 8 6 1.3356 4.3186 -2.8551 9 6 1.2437 5.1226 -3.9731 10 6 2.3771 5.7536 -4.4699 11 8 2.2866 6.5441 -5.5701 12 6 1.1013 6.5666 -6.2119 13 1 0.2540 6.0389 -5.7996 14 6 0.9701 7.2668 -7.4010 15 7 2.0026 7.9092 -7.9036 16 14 -0.6722 7.2974 -8.2907 17 1 -1.4736 8.4519 -7.8109 18 1 -0.4414 7.4281 -9.7517 19 1 -1.4073 6.0366 -8.0164 20 6 3.6041 5.5712 -3.8447 21 6 3.6953 4.7715 -2.7237 22 6 2.2364 -1.1207 0.7654 23 6 2.2365 -1.1208 -0.7653 24 1 -0.3633 0.4598 -0.9191 25 1 -0.3634 -1.0258 0.0614 26 1 -0.3633 0.5661 0.8577 27 1 2.6864 1.6086 0.7638 28 1 3.1811 3.6121 -0.3308 29 1 0.4545 3.8277 -2.4691 30 1 0.2906 5.2611 -4.4617 31 1 1.9107 8.3995 -8.7356 32 1 4.4860 6.0582 -4.2338 33 1 4.6485 4.6326 -2.2354 34 1 3.1713 -0.8747 1.2689 35 1 1.6111 -1.8582 1.2686 36 1 1.6112 -1.8584 -1.2685 37 1 3.1714 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322199075.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:33 Heat of formation + Delta-G solvation = 57.022820 kcal Electronic energy + Delta-G solvation = -20168.210487 eV Core-core repulsion = 17039.021087 eV Total energy + Delta-G solvation = -3129.189400 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.93039 -39.04016 -37.75226 -35.70162 -33.11732 -32.11519 -30.23416 -28.68262 -27.85974 -25.30437 -24.41289 -22.78558 -22.05056 -21.41250 -20.55999 -18.52958 -17.92542 -17.69568 -16.70706 -15.99825 -15.43862 -15.17287 -14.60980 -14.46230 -13.89257 -13.59456 -13.50485 -13.22639 -12.95344 -12.75495 -12.55661 -12.37253 -11.83868 -11.70760 -11.53135 -11.49052 -11.05336 -10.89303 -10.72517 -10.69466 -10.40974 -10.22909 -9.47500 -9.28998 -8.75401 -8.28141 -7.59466 -7.09513 -6.55433 -6.43733 -4.00620 1.32271 2.01074 2.25377 2.41505 2.63441 3.16827 3.18938 3.24092 3.40135 3.52343 4.00359 4.37953 4.53026 4.58042 4.65628 5.10155 5.23240 5.24947 5.27375 5.55387 5.65416 5.66909 5.72413 5.77463 5.81721 5.95642 6.12517 6.26128 6.38911 6.46547 6.58576 6.80916 6.93744 7.04342 7.18735 7.32162 7.46266 7.53810 7.83537 8.02421 9.02263 9.70312 10.73812 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028377 B = 0.003434 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.494242 B = 8151.763192 C = 8827.038381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.117 3.883 3 N -0.666 5.666 4 C 0.554 3.446 5 S -0.615 6.615 6 N -0.607 5.607 7 C 0.002 3.998 8 C -0.014 4.014 9 C -0.230 4.230 10 C 0.162 3.838 11 O -0.173 6.173 12 C -0.388 4.388 13 H 0.095 0.905 14 C 0.039 3.961 15 N -0.862 5.862 16 Si 0.941 3.059 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.191 4.191 21 C -0.071 4.071 22 C -0.178 4.178 23 C -0.155 4.155 24 H 0.107 0.893 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.394 0.606 28 H 0.397 0.603 29 H 0.137 0.863 30 H 0.131 0.869 31 H 0.270 0.730 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.216 -13.200 18.473 22.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.030 3.970 3 N -0.297 5.297 4 C 0.196 3.804 5 S -0.484 6.484 6 N -0.229 5.229 7 C -0.090 4.090 8 C -0.036 4.036 9 C -0.251 4.251 10 C 0.107 3.893 11 O -0.076 6.076 12 C -0.464 4.464 13 H 0.113 0.887 14 C -0.165 4.165 15 N -0.497 5.497 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.189 1.189 20 C -0.212 4.212 21 C -0.092 4.092 22 C -0.216 4.216 23 C -0.193 4.193 24 H 0.126 0.874 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.230 0.770 28 H 0.233 0.767 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.080 0.920 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.712 -13.288 17.189 21.738 hybrid contribution 0.417 0.470 1.041 1.216 sum 1.129 -12.818 18.230 22.314 Atomic orbital electron populations 1.21878 0.90010 1.02547 1.05137 1.20576 0.93048 0.77059 1.06324 1.44253 1.52661 1.15666 1.17148 1.22396 0.86624 0.81727 0.89636 1.93302 1.43606 1.82440 1.29059 1.42088 1.47357 1.15289 1.18126 1.16955 0.95188 1.03177 0.93668 1.21100 0.96593 0.91818 0.94096 1.21017 0.99415 1.04258 1.00370 1.19460 0.93172 0.88744 0.87909 1.83960 1.35936 1.54201 1.33455 1.21397 0.86824 1.33559 1.04659 0.88741 1.25305 0.99432 0.95910 0.95860 1.70052 1.29794 1.29937 1.19874 0.85703 0.80052 0.79198 0.78513 1.19863 1.20265 1.18947 1.19896 0.96173 1.06316 0.98786 1.20295 0.95368 0.97869 0.95655 1.23490 1.02217 0.99913 0.95966 1.23316 1.02741 1.00273 0.93001 0.87415 0.91600 0.92840 0.76970 0.76710 0.84495 0.85099 0.91998 0.86088 0.87134 0.88672 0.87424 0.87432 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.59 37.16 0.36 -1.02 16 2 C 0.12 1.10 1.97 -131.82 -0.26 0.84 16 3 N -0.67 -6.42 5.46 -49.30 -0.27 -6.69 16 4 C 0.55 7.57 7.76 -86.92 -0.67 6.89 16 5 S -0.61 -11.24 22.43 -107.50 -2.41 -13.65 16 6 N -0.61 -7.87 5.33 -11.36 -0.06 -7.93 16 7 C 0.00 0.04 5.99 -83.63 -0.50 -0.46 16 8 C -0.01 -0.27 7.86 -39.41 -0.31 -0.58 16 9 C -0.23 -5.17 9.16 -39.42 -0.36 -5.53 16 10 C 0.16 3.92 6.65 -39.08 -0.26 3.66 16 11 O -0.17 -4.93 9.75 0.01 0.00 -4.93 16 12 C -0.39 -10.93 9.48 30.88 0.29 -10.64 16 13 H 0.10 2.49 5.20 -52.49 -0.27 2.22 16 14 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 15 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 16 Si 0.94 20.83 29.55 -169.99 -5.02 15.81 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 C -0.19 -3.96 9.99 -39.42 -0.39 -4.36 16 21 C -0.07 -1.23 9.96 -39.41 -0.39 -1.62 16 22 C -0.18 -1.18 10.16 -26.69 -0.27 -1.45 16 23 C -0.15 -1.43 10.11 -26.69 -0.27 -1.70 16 24 H 0.11 1.43 5.59 -49.07 -0.27 1.16 16 25 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.39 2.50 8.85 -40.82 -0.36 2.14 16 28 H 0.40 3.56 8.84 -40.82 -0.36 3.20 16 29 H 0.14 2.70 5.90 -39.48 -0.23 2.47 16 30 H 0.13 3.00 5.64 -52.49 -0.30 2.70 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.97 8.14 -51.92 -0.42 0.54 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 324.94 15.07 4.90 4.90 Total: -1.00 -33.41 324.94 -9.56 -42.97 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.31 Total: 9.07 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -3.14 Total: -14.97 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.43 Total: -39.19 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: 0.00 Total: -4.93 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -11.24 SS G_CDS: -2.41 Total: -13.65 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.41 -9.56 -42.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322199075.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.992 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds