Wall clock time and date at job start Tue Mar 31 2020 06:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 115.55252 * 2 1 4 4 C 1.34784 * 119.99876 * 294.58068 * 3 2 1 5 5 S 1.71194 * 119.99718 * 3.64302 * 4 3 2 6 6 N 1.34772 * 120.00038 * 183.63630 * 4 3 2 7 7 C 1.39961 * 119.99917 * 176.45432 * 6 4 3 8 8 C 1.38925 * 120.00253 * 43.29405 * 7 6 4 9 9 C 1.38008 * 119.99899 * 180.02562 * 8 7 6 10 10 C 1.38912 * 119.99945 * 359.97438 * 9 8 7 11 11 O 1.35783 * 119.99514 * 179.97438 * 10 9 8 12 12 C 1.34809 * 117.00127 * 353.41000 * 11 10 9 13 13 H 1.07997 * 119.99968 * 5.15008 * 12 11 10 14 14 C 1.38624 * 119.99992 * 185.15558 * 12 11 10 15 15 N 1.31579 * 119.99888 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00115 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.46867 * 90.00049 * 16 14 12 18 18 H 1.48498 * 109.47437 * 209.99938 * 16 14 12 19 19 H 1.48498 * 109.47377 * 330.00592 * 16 14 12 20 20 C 1.38915 * 120.00566 * 0.26391 * 10 9 8 21 21 C 1.37998 * 120.00119 * 359.48364 * 20 10 9 22 22 C 1.53001 * 117.49816 * 145.66780 * 2 1 3 23 23 C 1.53003 * 117.49942 * 214.32755 * 2 1 3 24 24 H 1.09007 * 109.47032 * 63.42392 * 1 2 3 25 25 H 1.08995 * 109.47377 * 183.42342 * 1 2 3 26 26 H 1.08997 * 109.46968 * 303.42550 * 1 2 3 27 27 H 0.96994 * 120.00564 * 114.58468 * 3 2 1 28 28 H 0.97002 * 120.00011 * 356.45219 * 6 4 3 29 29 H 1.08002 * 120.00320 * 359.97438 * 8 7 6 30 30 H 1.07995 * 120.00507 * 179.97438 * 9 8 7 31 31 H 0.97006 * 119.99936 * 180.02562 * 15 14 12 32 32 H 1.07997 * 119.99511 * 179.71744 * 20 10 9 33 33 H 1.07999 * 120.00623 * 180.23441 * 21 20 10 34 34 H 1.08998 * 117.50149 * 215.00224 * 22 2 1 35 35 H 1.09003 * 117.49528 * 0.02562 * 22 2 1 36 36 H 1.09007 * 117.49606 * 359.97438 * 23 2 1 37 37 H 1.09001 * 117.49868 * 145.00007 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1619 1.3217 0.0000 4 6 2.0145 2.1391 -1.0615 5 16 1.0133 1.6718 -2.3691 6 7 2.6552 3.3243 -1.0934 7 6 2.5618 4.1401 -2.2269 8 6 1.3356 4.3186 -2.8551 9 6 1.2437 5.1226 -3.9731 10 6 2.3771 5.7536 -4.4699 11 8 2.2866 6.5441 -5.5701 12 6 1.1013 6.5666 -6.2119 13 1 0.2540 6.0389 -5.7996 14 6 0.9701 7.2668 -7.4010 15 7 2.0026 7.9092 -7.9036 16 14 -0.6722 7.2974 -8.2907 17 1 -1.4736 8.4519 -7.8109 18 1 -0.4414 7.4281 -9.7517 19 1 -1.4073 6.0366 -8.0164 20 6 3.6041 5.5712 -3.8447 21 6 3.6953 4.7715 -2.7237 22 6 2.2364 -1.1207 0.7654 23 6 2.2365 -1.1208 -0.7653 24 1 -0.3633 0.4598 -0.9191 25 1 -0.3634 -1.0258 0.0614 26 1 -0.3633 0.5661 0.8577 27 1 2.6864 1.6086 0.7638 28 1 3.1811 3.6121 -0.3308 29 1 0.4545 3.8277 -2.4691 30 1 0.2906 5.2611 -4.4617 31 1 1.9107 8.3995 -8.7356 32 1 4.4860 6.0582 -4.2338 33 1 4.6485 4.6326 -2.2354 34 1 3.1713 -0.8747 1.2689 35 1 1.6111 -1.8582 1.2686 36 1 1.6112 -1.8584 -1.2685 37 1 3.1714 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322199075.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:32 Heat of formation + Delta-G solvation = 34.980199 kcal Electronic energy + Delta-G solvation = -20169.166327 eV Core-core repulsion = 17039.021087 eV Total energy + Delta-G solvation = -3130.145240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.24120 -40.37984 -39.14742 -37.12128 -34.48622 -33.88693 -31.88192 -29.65297 -29.24351 -27.28253 -25.65655 -23.74909 -23.42028 -22.78572 -21.65031 -20.03229 -19.45256 -19.08191 -18.30562 -17.10993 -16.63442 -16.47920 -16.25634 -15.77788 -15.54605 -15.22029 -14.92423 -14.60233 -14.23792 -14.03748 -13.62741 -13.45726 -13.25727 -13.18429 -13.00810 -12.64490 -12.45331 -12.42301 -12.16563 -12.12886 -11.65940 -11.26205 -11.05685 -10.79986 -10.32516 -9.88878 -9.03590 -8.68953 -8.46692 -8.02781 -6.13010 0.06033 0.62665 0.74229 0.95650 1.36176 1.42340 1.46953 1.53616 2.19125 2.51023 2.74406 2.82411 3.16471 3.52435 3.68014 3.88732 3.98460 4.11415 4.18073 4.38238 4.50256 4.63224 4.73195 4.74373 4.86514 4.93863 5.02607 5.06464 5.12258 5.19113 5.28706 5.36238 5.51330 5.54318 5.64942 5.74998 5.92590 6.04482 6.22994 6.43257 6.98668 7.76898 8.75990 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028377 B = 0.003434 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.494242 B = 8151.763192 C = 8827.038381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.090 3.910 3 N -0.633 5.633 4 C 0.579 3.421 5 S -0.707 6.707 6 N -0.595 5.595 7 C 0.035 3.965 8 C -0.019 4.019 9 C -0.240 4.240 10 C 0.126 3.874 11 O -0.224 6.224 12 C -0.412 4.412 13 H 0.098 0.902 14 C -0.019 4.019 15 N -0.917 5.917 16 Si 1.014 2.986 17 H -0.260 1.260 18 H -0.269 1.269 19 H -0.259 1.259 20 C -0.197 4.197 21 C -0.054 4.054 22 C -0.135 4.135 23 C -0.172 4.172 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.418 0.582 28 H 0.425 0.575 29 H 0.139 0.861 30 H 0.114 0.886 31 H 0.273 0.727 32 H 0.127 0.873 33 H 0.163 0.837 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.103 0.897 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.163 -15.313 22.409 27.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.003 3.997 3 N -0.263 5.263 4 C 0.217 3.783 5 S -0.577 6.577 6 N -0.220 5.220 7 C -0.058 4.058 8 C -0.041 4.041 9 C -0.261 4.261 10 C 0.075 3.925 11 O -0.130 6.130 12 C -0.488 4.488 13 H 0.115 0.885 14 C -0.217 4.217 15 N -0.555 5.555 16 Si 0.834 3.166 17 H -0.185 1.185 18 H -0.193 1.193 19 H -0.183 1.183 20 C -0.217 4.217 21 C -0.074 4.074 22 C -0.172 4.172 23 C -0.211 4.211 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.259 0.741 28 H 0.267 0.733 29 H 0.156 0.844 30 H 0.132 0.868 31 H 0.082 0.918 32 H 0.145 0.855 33 H 0.181 0.819 34 H 0.135 0.865 35 H 0.146 0.854 36 H 0.121 0.879 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.692 -15.460 21.262 26.343 hybrid contribution 0.244 0.812 0.265 0.889 sum 1.936 -14.647 21.527 26.110 Atomic orbital electron populations 1.21761 0.90624 1.03399 1.03506 1.20833 0.92971 0.76989 1.08857 1.44189 1.50914 1.15022 1.16168 1.21816 0.85157 0.82087 0.89287 1.93663 1.47456 1.83843 1.32773 1.41719 1.47791 1.14613 1.17889 1.16962 0.94044 1.01329 0.93503 1.21175 0.98143 0.91199 0.93626 1.20993 0.98530 1.05118 1.01490 1.19992 0.95077 0.89684 0.87763 1.83927 1.36260 1.57159 1.35700 1.21782 0.87311 1.34194 1.05489 0.88482 1.26505 1.03570 0.95264 0.96346 1.70177 1.32388 1.32077 1.20891 0.84645 0.75076 0.79659 0.77238 1.18483 1.19350 1.18283 1.20209 0.95104 1.06755 0.99672 1.20697 0.97313 0.95472 0.93949 1.23618 1.02498 0.97239 0.93863 1.23307 1.02078 1.00311 0.95383 0.90995 0.89919 0.92105 0.74074 0.73338 0.84390 0.86809 0.91767 0.85484 0.81940 0.86466 0.85354 0.87879 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.59 71.98 0.69 -1.72 16 2 C 0.09 1.39 1.97 3.61 0.01 1.40 16 3 N -0.63 -9.49 5.46 -309.90 -1.69 -11.18 16 4 C 0.58 14.02 7.76 179.05 1.39 15.41 16 5 S -0.71 -25.71 22.43 -56.49 -1.27 -26.97 16 6 N -0.60 -12.89 5.33 -189.86 -1.01 -13.90 16 7 C 0.04 1.11 5.99 38.18 0.23 1.34 16 8 C -0.02 -0.75 7.86 22.38 0.18 -0.57 16 9 C -0.24 -11.30 9.16 22.38 0.20 -11.10 16 10 C 0.13 6.37 6.65 22.59 0.15 6.52 16 11 O -0.22 -13.65 9.75 -22.89 -0.22 -13.88 16 12 C -0.41 -24.70 9.48 67.91 0.64 -24.05 16 13 H 0.10 5.50 5.20 -2.91 -0.02 5.48 16 14 C -0.02 -1.11 5.49 84.82 0.47 -0.64 16 15 N -0.92 -56.89 13.67 21.61 0.30 -56.59 16 16 Si 1.01 44.49 29.55 68.60 2.03 46.52 16 17 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 20 C -0.20 -8.09 9.99 22.38 0.22 -7.87 16 21 C -0.05 -1.69 9.96 22.38 0.22 -1.46 16 22 C -0.13 -1.11 10.16 30.62 0.31 -0.79 16 23 C -0.17 -2.73 10.11 30.62 0.31 -2.42 16 24 H 0.07 1.90 5.59 -4.20 -0.02 1.87 16 25 H 0.08 1.17 8.10 -2.39 -0.02 1.15 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.42 2.81 8.85 -92.71 -0.82 1.99 16 28 H 0.43 5.04 8.84 -92.71 -0.82 4.23 16 29 H 0.14 5.50 5.90 -11.18 -0.07 5.43 16 30 H 0.11 5.62 5.64 -2.91 -0.02 5.60 16 31 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 32 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 33 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.13 0.63 8.14 -2.39 -0.02 0.62 16 36 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -81.10 324.94 2.58 -78.52 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -0.57 Total: 23.45 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 5.02 Total: -25.96 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -2.41 Total: -81.67 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.22 Total: -13.88 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: -25.71 SS G_CDS: -1.27 Total: -26.97 kcal Total: -81.10 2.58 -78.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322199075.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.500 kcal (2) G-P(sol) polarization free energy of solvation -81.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds