Wall clock time and date at job start Tue Mar 31 2020 06:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50705 * 119.99910 * 2 1 4 4 N 1.46504 * 109.46942 * 125.00458 * 3 2 1 5 5 C 1.34776 * 119.99835 * 180.02562 * 4 3 2 6 6 S 1.71197 * 120.00338 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99844 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00093 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47192 * 180.02562 * 8 7 5 10 10 C 1.38328 * 119.96230 * 269.98024 * 9 8 7 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47063 * 60.00398 * 19 17 15 21 21 H 1.48498 * 109.47240 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47319 * 300.00306 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99825 * 9 8 7 24 24 H 1.07998 * 120.00147 * 179.97438 * 1 2 3 25 25 H 1.08007 * 120.00057 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00479 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46955 * 5.00294 * 3 2 1 28 28 H 1.08995 * 109.47053 * 244.99982 * 3 2 1 29 29 H 0.97005 * 119.99925 * 359.97438 * 4 3 2 30 30 H 0.97004 * 119.99718 * 0.02562 * 7 5 4 31 31 H 1.09002 * 109.46490 * 60.00223 * 8 7 5 32 32 H 1.08992 * 109.46880 * 300.00477 * 8 7 5 33 33 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 34 34 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 35 35 H 1.08001 * 120.03256 * 180.31909 * 12 11 10 36 36 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 37 37 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4090 1.3334 6 16 3.6881 3.7457 0.2676 7 7 4.6338 2.4338 2.3746 8 6 5.4870 3.6044 2.5939 9 6 6.3436 3.3802 3.8133 10 6 5.8864 3.7686 5.0597 11 6 6.6697 3.5652 6.1810 12 6 7.9089 2.9672 6.0601 13 6 8.3731 2.5813 4.8097 14 8 9.5932 1.9989 4.6870 15 6 10.3544 1.9329 5.7978 16 1 9.9546 2.2590 6.7466 17 6 11.6506 1.4464 5.7220 18 7 12.1378 1.0496 4.5662 19 14 12.7056 1.3556 7.2609 20 1 12.0494 0.4741 8.2596 21 1 14.0402 0.8042 6.9144 22 1 12.8662 2.7170 7.8320 23 6 7.5842 2.7877 3.6852 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4026 -0.9313 29 1 3.0446 0.5746 1.7355 30 1 4.6851 1.6762 2.9783 31 1 4.8631 4.4854 2.7447 32 1 6.1261 3.7562 1.7242 33 1 4.9156 4.2318 5.1574 34 1 6.3102 3.8698 7.1526 35 1 8.5181 2.8039 6.9369 36 1 13.0447 0.7096 4.5132 37 1 7.9408 2.4854 2.7117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322797289.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:11 Heat of formation + Delta-G solvation = 33.241120 kcal Electronic energy + Delta-G solvation = -19496.998103 eV Core-core repulsion = 16366.777451 eV Total energy + Delta-G solvation = -3130.220652 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.53899 -38.86984 -37.11108 -35.85966 -33.52332 -32.40155 -30.93438 -29.26172 -27.08524 -25.64168 -24.89692 -23.64367 -21.82461 -21.00810 -20.64354 -18.59160 -17.80430 -17.41982 -16.85535 -15.95515 -15.46732 -15.23413 -14.90922 -14.84978 -14.44500 -14.29415 -13.81729 -13.70230 -13.45876 -13.08056 -12.58145 -12.53514 -11.81469 -11.64581 -11.47801 -11.43842 -11.10824 -10.97273 -10.92111 -10.79455 -10.54510 -10.10134 -9.49585 -9.14995 -8.95400 -8.39802 -7.86974 -7.46925 -7.39226 -6.55194 -4.15133 1.41647 1.47573 1.76979 2.07663 2.17528 2.78809 3.06214 3.07887 3.10749 3.56858 3.87197 4.30758 4.41618 4.63529 4.78207 4.99182 5.15604 5.17760 5.35958 5.39786 5.44948 5.65680 5.72236 5.76993 5.84547 5.98078 6.06361 6.15230 6.17818 6.39364 6.46978 6.71327 6.73483 6.90891 7.07324 7.17620 7.23197 7.28267 7.60993 7.88285 8.89742 9.57023 10.62245 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024069 B = 0.002759 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.032993 B =10145.079730 C =10472.932641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.183 4.183 3 C 0.155 3.845 4 N -0.689 5.689 5 C 0.562 3.438 6 S -0.655 6.655 7 N -0.670 5.670 8 C 0.173 3.827 9 C -0.080 4.080 10 C -0.194 4.194 11 C -0.076 4.076 12 C -0.223 4.223 13 C 0.149 3.851 14 O -0.174 6.174 15 C -0.395 4.395 16 H 0.092 0.908 17 C 0.041 3.959 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.269 1.269 23 C -0.168 4.168 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.398 0.602 30 H 0.400 0.600 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.129 0.871 36 H 0.272 0.728 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.033 -2.698 -2.390 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.202 4.202 3 C 0.032 3.968 4 N -0.319 5.319 5 C 0.201 3.799 6 S -0.531 6.531 7 N -0.298 5.298 8 C 0.051 3.949 9 C -0.081 4.081 10 C -0.213 4.213 11 C -0.094 4.094 12 C -0.243 4.243 13 C 0.095 3.905 14 O -0.077 6.077 15 C -0.471 4.471 16 H 0.110 0.890 17 C -0.164 4.164 18 N -0.494 5.494 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.194 1.194 23 C -0.188 4.188 24 H 0.122 0.878 25 H 0.121 0.879 26 H 0.133 0.867 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.234 0.766 30 H 0.237 0.763 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.146 0.854 36 H 0.082 0.918 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.712 -1.909 -3.458 18.147 hybrid contribution 0.697 -1.497 1.983 2.581 sum -17.015 -3.406 -1.475 17.415 Atomic orbital electron populations 1.24020 0.95707 1.02623 0.97317 1.23038 0.96355 0.98054 1.02729 1.20727 0.91362 0.95917 0.88820 1.44945 1.39199 1.16860 1.30932 1.22160 0.81020 0.89910 0.86832 1.93463 1.84648 1.27677 1.47325 1.45305 1.37125 1.21541 1.25799 1.20570 0.91555 0.86155 0.96626 1.19259 0.94385 1.00899 0.93565 1.20501 1.00552 1.08151 0.92121 1.20756 0.93834 0.97206 0.97617 1.21265 0.98057 1.06981 0.97974 1.19318 0.87237 0.91069 0.92859 1.83982 1.21662 1.65719 1.36374 1.21283 0.94498 1.44928 0.86410 0.89043 1.25308 0.96163 0.96194 0.98743 1.70020 1.16610 1.38593 1.24154 0.85770 0.78773 0.79085 0.79765 1.19473 1.20185 1.19394 1.20110 0.94785 1.06512 0.97422 0.87760 0.87880 0.86664 0.89260 0.88788 0.76609 0.76327 0.88929 0.88857 0.87398 0.87180 0.85382 0.91798 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 14.32 29.02 0.42 -0.41 16 2 C -0.18 -1.09 9.63 -36.02 -0.35 -1.44 16 3 C 0.15 1.28 5.57 -5.19 -0.03 1.25 16 4 N -0.69 -6.11 5.55 -63.21 -0.35 -6.46 16 5 C 0.56 6.95 7.98 -86.91 -0.69 6.26 16 6 S -0.66 -10.85 27.77 -107.50 -2.99 -13.84 16 7 N -0.67 -7.88 5.55 -63.21 -0.35 -8.23 16 8 C 0.17 2.39 5.25 -5.19 -0.03 2.37 16 9 C -0.08 -1.28 5.25 -104.65 -0.55 -1.83 16 10 C -0.19 -3.00 9.70 -39.53 -0.38 -3.39 16 11 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 12 C -0.22 -4.50 9.17 -39.40 -0.36 -4.86 16 13 C 0.15 3.37 6.65 -39.11 -0.26 3.11 16 14 O -0.17 -4.76 9.76 0.05 0.00 -4.76 16 15 C -0.40 -10.62 9.49 30.89 0.29 -10.32 16 16 H 0.09 2.25 5.21 -52.49 -0.27 1.98 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -24.56 13.67 55.48 0.76 -23.80 16 19 Si 0.94 19.84 29.55 -169.99 -5.02 14.81 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C -0.17 -3.26 9.65 -39.39 -0.38 -3.64 16 24 H 0.10 0.41 8.06 -52.49 -0.42 -0.01 16 25 H 0.10 0.52 7.84 -52.48 -0.41 0.10 16 26 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 27 H 0.09 0.82 7.64 -51.93 -0.40 0.42 16 28 H 0.09 0.90 7.99 -51.93 -0.42 0.48 16 29 H 0.40 2.53 8.48 -40.82 -0.35 2.19 16 30 H 0.40 4.01 8.48 -40.82 -0.35 3.67 16 31 H 0.09 1.29 7.93 -51.93 -0.41 0.87 16 32 H 0.09 1.40 7.93 -51.93 -0.41 0.99 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 36 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -32.05 337.10 -10.25 -42.30 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.56 Total: 8.47 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.82 Total: -13.57 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.06 Total: -38.49 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: 0.00 Total: -4.76 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: -10.85 SS G_CDS: -2.99 Total: -13.84 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.05 -10.25 -42.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322797289.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.538 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds