Wall clock time and date at job start Tue Mar 31 2020 06:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50705 * 119.99910 * 2 1 4 4 N 1.46504 * 109.46942 * 125.00458 * 3 2 1 5 5 C 1.34776 * 119.99835 * 180.02562 * 4 3 2 6 6 S 1.71197 * 120.00338 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99844 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00093 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47192 * 180.02562 * 8 7 5 10 10 C 1.38328 * 119.96230 * 269.98024 * 9 8 7 11 11 C 1.38281 * 120.13505 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47063 * 60.00398 * 19 17 15 21 21 H 1.48498 * 109.47240 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47319 * 300.00306 * 19 17 15 23 23 C 1.38073 * 119.96534 * 89.99825 * 9 8 7 24 24 H 1.07998 * 120.00147 * 179.97438 * 1 2 3 25 25 H 1.08007 * 120.00057 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00479 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46955 * 5.00294 * 3 2 1 28 28 H 1.08995 * 109.47053 * 244.99982 * 3 2 1 29 29 H 0.97005 * 119.99925 * 359.97438 * 4 3 2 30 30 H 0.97004 * 119.99718 * 0.02562 * 7 5 4 31 31 H 1.09002 * 109.46490 * 60.00223 * 8 7 5 32 32 H 1.08992 * 109.46880 * 300.00477 * 8 7 5 33 33 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 34 34 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 35 35 H 1.08001 * 120.03256 * 180.31909 * 12 11 10 36 36 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 37 37 H 1.07996 * 120.03547 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4090 1.3334 6 16 3.6881 3.7457 0.2676 7 7 4.6338 2.4338 2.3746 8 6 5.4870 3.6044 2.5939 9 6 6.3436 3.3802 3.8133 10 6 5.8864 3.7686 5.0597 11 6 6.6697 3.5652 6.1810 12 6 7.9089 2.9672 6.0601 13 6 8.3731 2.5813 4.8097 14 8 9.5932 1.9989 4.6870 15 6 10.3544 1.9329 5.7978 16 1 9.9546 2.2590 6.7466 17 6 11.6506 1.4464 5.7220 18 7 12.1378 1.0496 4.5662 19 14 12.7056 1.3556 7.2609 20 1 12.0494 0.4741 8.2596 21 1 14.0402 0.8042 6.9144 22 1 12.8662 2.7170 7.8320 23 6 7.5842 2.7877 3.6852 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4026 -0.9313 29 1 3.0446 0.5746 1.7355 30 1 4.6851 1.6762 2.9783 31 1 4.8631 4.4854 2.7447 32 1 6.1261 3.7562 1.7242 33 1 4.9156 4.2318 5.1574 34 1 6.3102 3.8698 7.1526 35 1 8.5181 2.8039 6.9369 36 1 13.0447 0.7096 4.5132 37 1 7.9408 2.4854 2.7117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322797289.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:11 Heat of formation + Delta-G solvation = 12.856409 kcal Electronic energy + Delta-G solvation = -19497.882051 eV Core-core repulsion = 16366.777451 eV Total energy + Delta-G solvation = -3131.104599 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.98537 -40.05249 -38.53877 -36.91487 -34.41892 -34.18598 -32.22673 -30.81763 -28.13011 -27.32360 -26.11884 -24.66629 -23.31028 -22.55314 -21.22223 -19.87479 -19.19686 -18.77803 -18.18702 -16.89039 -16.71350 -16.58340 -16.18054 -16.06902 -15.95057 -15.50411 -15.34740 -14.87470 -14.46824 -14.25317 -14.00711 -13.77511 -13.51458 -13.02949 -12.54950 -12.53204 -12.45331 -12.29373 -12.26022 -12.15182 -12.07196 -11.24317 -10.82140 -10.61972 -10.05029 -9.85271 -9.11427 -9.07761 -8.73709 -8.48416 -6.17220 0.26026 0.36758 0.66778 0.85329 1.12198 1.35153 1.45088 1.51139 1.80870 2.16383 2.62585 2.85279 3.12899 3.35361 3.73095 3.78414 4.06272 4.13606 4.27616 4.37576 4.48445 4.54526 4.59171 4.69336 4.71052 4.84758 4.98108 4.98264 5.09447 5.22051 5.43567 5.58486 5.62837 5.66148 5.68358 5.69117 5.88051 5.99574 6.12692 6.35623 6.96292 7.75821 8.74316 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024069 B = 0.002759 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.032993 B =10145.079730 C =10472.932641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.190 4.190 3 C 0.156 3.844 4 N -0.664 5.664 5 C 0.582 3.418 6 S -0.735 6.735 7 N -0.660 5.660 8 C 0.185 3.815 9 C -0.064 4.064 10 C -0.165 4.165 11 C -0.070 4.070 12 C -0.231 4.231 13 C 0.111 3.889 14 O -0.231 6.231 15 C -0.414 4.414 16 H 0.104 0.896 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.017 2.983 20 H -0.255 1.255 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.178 4.178 24 H 0.122 0.878 25 H 0.103 0.897 26 H 0.128 0.872 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.416 0.584 30 H 0.413 0.587 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.121 0.879 36 H 0.273 0.727 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.990 -2.753 -0.430 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.209 4.209 3 C 0.033 3.967 4 N -0.294 5.294 5 C 0.217 3.783 6 S -0.612 6.612 7 N -0.289 5.289 8 C 0.062 3.938 9 C -0.065 4.065 10 C -0.184 4.184 11 C -0.087 4.087 12 C -0.251 4.251 13 C 0.061 3.939 14 O -0.138 6.138 15 C -0.489 4.489 16 H 0.122 0.878 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.836 3.164 20 H -0.180 1.180 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.198 4.198 24 H 0.140 0.860 25 H 0.122 0.878 26 H 0.146 0.854 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.255 0.745 30 H 0.252 0.748 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.756 -1.988 -1.479 20.903 hybrid contribution 1.191 -1.409 1.316 2.266 sum -19.565 -3.397 -0.163 19.858 Atomic orbital electron populations 1.24223 0.95480 1.03533 0.95362 1.22928 0.96506 0.97076 1.04376 1.20756 0.90924 0.97265 0.87767 1.44968 1.37546 1.16040 1.30858 1.21622 0.81251 0.89557 0.85891 1.93667 1.86614 1.30841 1.50086 1.44995 1.36555 1.21471 1.25880 1.20350 0.91363 0.87125 0.94981 1.19396 0.93012 0.99085 0.94972 1.21019 1.01436 1.04979 0.90961 1.21171 0.92120 0.95498 0.99947 1.21403 0.99587 1.07378 0.96704 1.19858 0.86628 0.92459 0.94944 1.83950 1.23840 1.68922 1.37082 1.21785 0.95134 1.44983 0.87046 0.87843 1.26580 0.97392 0.95703 1.02342 1.70174 1.17191 1.41556 1.26949 0.84665 0.76582 0.79675 0.75443 1.17954 1.19893 1.18209 1.20234 0.95956 1.07244 0.96323 0.86016 0.87845 0.85424 0.90026 0.90205 0.74497 0.74786 0.87930 0.90287 0.83310 0.83275 0.86095 0.91850 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 14.32 67.79 0.97 -0.17 16 2 C -0.19 -1.80 9.63 25.66 0.25 -1.55 16 3 C 0.16 2.34 5.57 85.63 0.48 2.82 16 4 N -0.66 -10.26 5.55 -353.90 -1.97 -12.23 16 5 C 0.58 13.32 7.98 179.05 1.43 14.75 16 6 S -0.74 -24.14 27.77 -56.49 -1.57 -25.71 16 7 N -0.66 -13.86 5.55 -353.91 -1.97 -15.83 16 8 C 0.18 4.71 5.25 85.63 0.45 5.16 16 9 C -0.06 -1.88 5.25 -19.88 -0.10 -1.99 16 10 C -0.17 -4.35 9.70 22.30 0.22 -4.14 16 11 C -0.07 -2.06 10.04 22.25 0.22 -1.83 16 12 C -0.23 -9.14 9.17 22.39 0.21 -8.93 16 13 C 0.11 5.17 6.65 22.58 0.15 5.32 16 14 O -0.23 -13.37 9.76 -22.74 -0.22 -13.59 16 15 C -0.41 -23.19 9.49 67.92 0.64 -22.55 16 16 H 0.10 5.25 5.21 -2.91 -0.02 5.23 16 17 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 18 N -0.92 -55.59 13.67 21.61 0.30 -55.30 16 19 Si 1.02 41.57 29.55 68.60 2.03 43.59 16 20 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 23 C -0.18 -6.95 9.65 22.39 0.22 -6.73 16 24 H 0.12 0.56 8.06 -2.91 -0.02 0.54 16 25 H 0.10 0.80 7.84 -2.91 -0.02 0.77 16 26 H 0.13 0.93 8.06 -2.91 -0.02 0.91 16 27 H 0.08 1.41 7.64 -2.39 -0.02 1.39 16 28 H 0.08 1.49 7.99 -2.39 -0.02 1.47 16 29 H 0.42 3.93 8.48 -92.70 -0.79 3.15 16 30 H 0.41 6.93 8.48 -92.71 -0.79 6.15 16 31 H 0.10 2.52 7.93 -2.39 -0.02 2.51 16 32 H 0.08 2.33 7.93 -2.39 -0.02 2.31 16 33 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 35 H 0.12 4.89 5.64 -2.91 -0.02 4.87 16 36 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -75.58 337.10 1.72 -73.85 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -0.47 Total: 25.83 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 5.59 Total: -20.62 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -3.63 Total: -83.35 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.22 Total: -13.59 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: -24.14 SS G_CDS: -1.57 Total: -25.71 kcal Total: -75.58 1.72 -73.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322797289.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.711 kcal (2) G-P(sol) polarization free energy of solvation -75.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds