Wall clock time and date at job start Tue Mar 31 2020 06:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86801 * 119.99764 * 2 1 4 4 H 1.48500 * 109.47555 * 269.99929 * 3 2 1 5 5 H 1.48504 * 109.47376 * 30.00317 * 3 2 1 6 6 H 1.48508 * 109.47088 * 150.00026 * 3 2 1 7 7 C 1.38622 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99866 * 359.97438 * 7 2 1 9 9 O 1.34816 * 120.00315 * 180.02562 * 7 2 1 10 10 C 1.35781 * 116.99732 * 185.48364 * 9 7 2 11 11 C 1.38899 * 120.00303 * 6.53263 * 10 9 7 12 12 C 1.38003 * 120.00824 * 180.02562 * 11 10 9 13 13 C 1.38929 * 119.99307 * 359.97438 * 12 11 10 14 14 N 1.39963 * 120.00522 * 180.02562 * 13 12 11 15 15 C 1.34772 * 119.99637 * 44.62487 * 14 13 12 16 16 S 1.71201 * 120.00418 * 355.86641 * 15 14 13 17 17 N 1.34780 * 119.99622 * 175.86259 * 15 14 13 18 18 C 1.46507 * 119.99693 * 180.02562 * 17 15 14 19 19 C 1.53786 * 113.61455 * 254.13675 * 18 17 15 20 20 C 1.53954 * 87.01696 * 220.04951 * 19 18 17 21 21 C 1.53777 * 87.11533 * 25.36274 * 20 19 18 22 22 C 1.38933 * 119.99306 * 0.27905 * 13 12 11 23 23 C 1.38002 * 119.99843 * 359.44360 * 22 13 12 24 24 H 0.97002 * 120.00358 * 0.02562 * 1 2 3 25 25 H 1.08007 * 119.99893 * 359.97438 * 11 10 9 26 26 H 1.07994 * 120.00515 * 179.97438 * 12 11 10 27 27 H 0.97004 * 119.99938 * 224.63439 * 14 13 12 28 28 H 0.96995 * 120.00420 * 0.02562 * 17 15 14 29 29 H 1.09003 * 112.84820 * 25.33285 * 18 17 15 30 30 H 1.09001 * 113.61171 * 334.57084 * 19 18 17 31 31 H 1.08997 * 113.61179 * 105.47039 * 19 18 17 32 32 H 1.08999 * 113.53454 * 270.80980 * 20 19 18 33 33 H 1.09007 * 113.66314 * 139.93262 * 20 19 18 34 34 H 1.08995 * 113.61623 * 220.08832 * 21 20 19 35 35 H 1.09004 * 113.69287 * 89.19653 * 21 20 19 36 36 H 1.08006 * 120.00051 * 179.72632 * 22 13 12 37 37 H 1.08003 * 119.99502 * 180.25908 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0466 -1.4000 5 1 1.4472 2.6527 0.7001 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2005 -0.0005 8 1 1.4689 -2.1358 -0.0005 9 8 3.3571 -1.2005 0.0000 10 6 3.9735 -2.4047 -0.1162 11 6 3.2240 -3.5475 -0.3645 12 6 3.8504 -4.7716 -0.4820 13 6 5.2308 -4.8607 -0.3526 14 7 5.8663 -6.1020 -0.4723 15 6 5.5204 -6.9429 -1.4671 16 16 4.2321 -6.5395 -2.5199 17 7 6.1888 -8.1014 -1.6331 18 6 5.8132 -9.0153 -2.7148 19 6 5.0597 -10.2657 -2.2311 20 6 5.8817 -11.0610 -3.2617 21 6 6.9481 -9.9592 -3.1458 22 6 5.9797 -3.7183 -0.0990 23 6 5.3537 -2.4936 0.0128 24 1 -0.4851 0.8400 -0.0004 25 1 2.1509 -3.4783 -0.4647 26 1 3.2676 -5.6601 -0.6746 27 1 6.5556 -6.3570 0.1607 28 1 6.9185 -8.3301 -1.0364 29 1 5.3272 -8.5077 -3.5481 30 1 5.2778 -10.5342 -1.1975 31 1 3.9916 -10.2426 -2.4472 32 1 5.4135 -11.1139 -4.2445 33 1 6.2165 -12.0327 -2.8983 34 1 7.4023 -9.6892 -4.0991 35 1 7.6843 -10.1428 -2.3632 36 1 7.0524 -3.7881 0.0060 37 1 5.9364 -1.6050 0.2057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327773806.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:32 Heat of formation + Delta-G solvation = 47.571718 kcal Electronic energy + Delta-G solvation = -19982.362638 eV Core-core repulsion = 16852.763407 eV Total energy + Delta-G solvation = -3129.599231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10464 -39.33825 -38.10850 -36.11665 -33.61276 -32.29983 -30.31896 -28.32302 -26.08197 -25.61923 -24.89888 -23.86292 -22.01416 -21.37848 -20.14702 -18.67593 -17.86734 -17.78405 -17.08651 -16.22303 -15.55936 -15.38957 -15.03512 -14.39273 -13.93411 -13.84124 -13.75179 -13.27086 -12.91073 -12.80741 -12.73929 -12.35507 -12.20347 -11.70463 -11.56852 -11.49346 -11.02363 -10.97499 -10.79218 -10.74268 -10.72051 -10.17964 -9.55282 -9.35995 -8.80731 -8.37848 -7.69963 -7.26864 -6.69951 -6.40119 -4.05424 1.27654 2.00117 2.16496 2.31412 2.68130 3.23758 3.28301 3.41475 3.50930 4.09968 4.22762 4.25098 4.48552 4.50552 4.52604 4.85192 5.10858 5.21474 5.27979 5.35483 5.48304 5.52089 5.59125 5.66049 5.71123 5.77756 5.92108 6.10962 6.23958 6.36183 6.53509 6.68931 6.83343 6.98982 7.15729 7.35346 7.43699 7.62361 7.83700 8.04717 8.94590 9.55683 10.67214 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.038360 B = 0.003102 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.753189 B = 9023.645743 C = 9484.471896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.387 4.387 8 H 0.109 0.891 9 O -0.212 6.212 10 C 0.168 3.832 11 C -0.216 4.216 12 C -0.015 4.015 13 C 0.012 3.988 14 N -0.610 5.610 15 C 0.553 3.447 16 S -0.627 6.627 17 N -0.683 5.683 18 C 0.124 3.876 19 C -0.149 4.149 20 C -0.137 4.137 21 C -0.148 4.148 22 C -0.073 4.073 23 C -0.192 4.192 24 H 0.280 0.720 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.397 0.603 28 H 0.393 0.607 29 H 0.143 0.857 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.895 -19.150 -1.250 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.462 4.462 8 H 0.126 0.874 9 O -0.117 6.117 10 C 0.115 3.885 11 C -0.237 4.237 12 C -0.037 4.037 13 C -0.080 4.080 14 N -0.232 5.232 15 C 0.195 3.805 16 S -0.497 6.497 17 N -0.313 5.313 18 C 0.019 3.981 19 C -0.188 4.188 20 C -0.175 4.175 21 C -0.186 4.186 22 C -0.094 4.094 23 C -0.212 4.212 24 H 0.090 0.910 25 H 0.155 0.845 26 H 0.155 0.845 27 H 0.234 0.766 28 H 0.229 0.771 29 H 0.160 0.840 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.839 -18.509 -2.035 23.810 hybrid contribution 1.554 0.204 1.070 1.898 sum 16.393 -18.305 -0.965 24.591 Atomic orbital electron populations 1.69659 1.05589 1.28540 1.47548 1.24485 0.95035 0.98863 0.95640 0.86184 0.80307 0.81416 0.79014 1.19838 1.20782 1.18321 1.20810 0.76799 0.96781 1.51830 0.87387 1.83577 1.22744 1.25874 1.79456 1.19212 0.91566 0.85697 0.92067 1.21139 1.01416 0.91579 1.09584 1.21103 0.92270 0.98746 0.91566 1.17005 0.91842 0.82147 1.17010 1.42085 1.38614 1.16080 1.26412 1.22508 0.89593 0.82213 0.86162 1.93492 1.25562 1.83885 1.46762 1.45024 1.34690 1.18059 1.33495 1.23210 0.96867 0.87352 0.90677 1.23421 1.01009 0.95109 0.99299 1.22695 0.97130 0.97465 1.00222 1.23359 0.96901 0.96056 1.02314 1.20299 0.97825 0.90612 1.00649 1.19881 0.92049 0.97099 1.12169 0.90999 0.84461 0.84477 0.76599 0.77051 0.83982 0.90130 0.90077 0.89382 0.90799 0.90360 0.89963 0.86913 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.49 13.96 55.48 0.77 -24.71 16 2 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 21.69 28.62 -169.99 -4.86 16.83 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.39 -10.95 9.89 30.87 0.31 -10.64 16 8 H 0.11 3.14 5.54 -52.48 -0.29 2.85 16 9 O -0.21 -5.59 8.58 -0.01 0.00 -5.59 16 10 C 0.17 3.87 6.65 -39.09 -0.26 3.61 16 11 C -0.22 -4.85 9.12 -39.42 -0.36 -5.21 16 12 C -0.01 -0.29 7.86 -39.41 -0.31 -0.60 16 13 C 0.01 0.20 5.96 -83.63 -0.50 -0.29 16 14 N -0.61 -7.60 5.32 -11.36 -0.06 -7.66 16 15 C 0.55 7.36 7.85 -86.92 -0.68 6.68 16 16 S -0.63 -11.62 24.19 -107.50 -2.60 -14.22 16 17 N -0.68 -6.07 5.37 -54.72 -0.29 -6.37 16 18 C 0.12 1.07 3.99 -67.11 -0.27 0.80 16 19 C -0.15 -1.12 7.89 -25.82 -0.20 -1.33 16 20 C -0.14 -0.78 8.09 -25.83 -0.21 -0.99 16 21 C -0.15 -0.86 7.83 -25.92 -0.20 -1.06 16 22 C -0.07 -1.19 9.96 -39.41 -0.39 -1.58 16 23 C -0.19 -3.70 9.98 -39.42 -0.39 -4.09 16 24 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.14 3.28 5.72 -52.48 -0.30 2.98 16 26 H 0.14 2.73 6.02 -42.30 -0.25 2.48 16 27 H 0.40 3.32 8.84 -40.82 -0.36 2.96 16 28 H 0.39 2.19 8.73 -40.82 -0.36 1.83 16 29 H 0.14 1.62 6.64 -51.93 -0.34 1.28 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.37 8.11 -51.93 -0.42 -0.05 16 36 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 37 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 322.66 15.07 4.86 4.86 Total: -1.00 -32.96 322.66 -10.17 -43.13 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.42 Total: 6.73 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -3.57 Total: -13.01 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.42 Total: -38.74 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: 0.00 Total: -5.59 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.86 Total: 16.83 kcal Atomic # 16 Polarization: -11.62 SS G_CDS: -2.60 Total: -14.22 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.96 -10.17 -43.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327773806.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.703 kcal (2) G-P(sol) polarization free energy of solvation -32.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds