Wall clock time and date at job start Tue Mar 31 2020 06:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86801 * 119.99764 * 2 1 4 4 H 1.48500 * 109.47555 * 269.99929 * 3 2 1 5 5 H 1.48504 * 109.47376 * 30.00317 * 3 2 1 6 6 H 1.48508 * 109.47088 * 150.00026 * 3 2 1 7 7 C 1.38622 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99866 * 359.97438 * 7 2 1 9 9 O 1.34816 * 120.00315 * 180.02562 * 7 2 1 10 10 C 1.35781 * 116.99732 * 185.48364 * 9 7 2 11 11 C 1.38899 * 120.00303 * 6.53263 * 10 9 7 12 12 C 1.38003 * 120.00824 * 180.02562 * 11 10 9 13 13 C 1.38929 * 119.99307 * 359.97438 * 12 11 10 14 14 N 1.39963 * 120.00522 * 180.02562 * 13 12 11 15 15 C 1.34772 * 119.99637 * 44.62487 * 14 13 12 16 16 S 1.71201 * 120.00418 * 355.86641 * 15 14 13 17 17 N 1.34780 * 119.99622 * 175.86259 * 15 14 13 18 18 C 1.46507 * 119.99693 * 180.02562 * 17 15 14 19 19 C 1.53786 * 113.61455 * 254.13675 * 18 17 15 20 20 C 1.53954 * 87.01696 * 220.04951 * 19 18 17 21 21 C 1.53777 * 87.11533 * 25.36274 * 20 19 18 22 22 C 1.38933 * 119.99306 * 0.27905 * 13 12 11 23 23 C 1.38002 * 119.99843 * 359.44360 * 22 13 12 24 24 H 0.97002 * 120.00358 * 0.02562 * 1 2 3 25 25 H 1.08007 * 119.99893 * 359.97438 * 11 10 9 26 26 H 1.07994 * 120.00515 * 179.97438 * 12 11 10 27 27 H 0.97004 * 119.99938 * 224.63439 * 14 13 12 28 28 H 0.96995 * 120.00420 * 0.02562 * 17 15 14 29 29 H 1.09003 * 112.84820 * 25.33285 * 18 17 15 30 30 H 1.09001 * 113.61171 * 334.57084 * 19 18 17 31 31 H 1.08997 * 113.61179 * 105.47039 * 19 18 17 32 32 H 1.08999 * 113.53454 * 270.80980 * 20 19 18 33 33 H 1.09007 * 113.66314 * 139.93262 * 20 19 18 34 34 H 1.08995 * 113.61623 * 220.08832 * 21 20 19 35 35 H 1.09004 * 113.69287 * 89.19653 * 21 20 19 36 36 H 1.08006 * 120.00051 * 179.72632 * 22 13 12 37 37 H 1.08003 * 119.99502 * 180.25908 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0466 -1.4000 5 1 1.4472 2.6527 0.7001 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2005 -0.0005 8 1 1.4689 -2.1358 -0.0005 9 8 3.3571 -1.2005 0.0000 10 6 3.9735 -2.4047 -0.1162 11 6 3.2240 -3.5475 -0.3645 12 6 3.8504 -4.7716 -0.4820 13 6 5.2308 -4.8607 -0.3526 14 7 5.8663 -6.1020 -0.4723 15 6 5.5204 -6.9429 -1.4671 16 16 4.2321 -6.5395 -2.5199 17 7 6.1888 -8.1014 -1.6331 18 6 5.8132 -9.0153 -2.7148 19 6 5.0597 -10.2657 -2.2311 20 6 5.8817 -11.0610 -3.2617 21 6 6.9481 -9.9592 -3.1458 22 6 5.9797 -3.7183 -0.0990 23 6 5.3537 -2.4936 0.0128 24 1 -0.4851 0.8400 -0.0004 25 1 2.1509 -3.4783 -0.4647 26 1 3.2676 -5.6601 -0.6746 27 1 6.5556 -6.3570 0.1607 28 1 6.9185 -8.3301 -1.0364 29 1 5.3272 -8.5077 -3.5481 30 1 5.2778 -10.5342 -1.1975 31 1 3.9916 -10.2426 -2.4472 32 1 5.4135 -11.1139 -4.2445 33 1 6.2165 -12.0327 -2.8983 34 1 7.4023 -9.6892 -4.0991 35 1 7.6843 -10.1428 -2.3632 36 1 7.0524 -3.7881 0.0060 37 1 5.9364 -1.6050 0.2057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327773806.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:32 Heat of formation + Delta-G solvation = 25.968689 kcal Electronic energy + Delta-G solvation = -19983.299415 eV Core-core repulsion = 16852.763407 eV Total energy + Delta-G solvation = -3130.536008 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.31791 -40.57980 -39.46265 -37.48521 -34.84595 -34.27596 -31.91471 -29.84903 -27.27041 -26.64365 -26.17440 -24.93512 -23.54129 -22.86955 -20.91955 -20.16397 -19.46606 -19.04912 -18.67876 -17.31141 -16.68212 -16.63401 -16.17747 -15.96340 -15.68851 -15.41965 -15.27113 -14.45514 -14.21610 -14.15924 -13.93051 -13.52529 -13.39565 -13.33918 -12.94194 -12.52688 -12.51544 -12.25414 -12.18037 -11.96690 -11.59409 -11.41267 -11.34488 -10.94480 -10.43916 -9.93293 -9.12599 -8.87532 -8.48521 -8.19572 -6.20996 0.02391 0.59099 0.70561 0.90508 1.33488 1.38632 1.49694 1.55007 2.30089 2.56328 2.76099 3.10171 3.11920 3.50451 3.65598 3.93209 3.96648 4.09321 4.14694 4.48210 4.49239 4.59116 4.69825 4.73358 4.80584 4.95013 5.05498 5.06248 5.09843 5.14888 5.26218 5.32954 5.49208 5.59940 5.64089 5.78896 5.85458 6.00009 6.24062 6.43269 6.85141 7.56965 8.63421 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.038360 B = 0.003102 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.753189 B = 9023.645743 C = 9484.471896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.398 4.398 8 H 0.076 0.924 9 O -0.237 6.237 10 C 0.132 3.868 11 C -0.235 4.235 12 C -0.023 4.023 13 C 0.042 3.958 14 N -0.594 5.594 15 C 0.582 3.418 16 S -0.735 6.735 17 N -0.646 5.646 18 C 0.107 3.893 19 C -0.149 4.149 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.054 4.054 23 C -0.185 4.185 24 H 0.285 0.715 25 H 0.102 0.898 26 H 0.130 0.870 27 H 0.428 0.572 28 H 0.420 0.580 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.171 0.829 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.240 -21.076 -0.403 29.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.474 4.474 8 H 0.094 0.906 9 O -0.144 6.144 10 C 0.082 3.918 11 C -0.256 4.256 12 C -0.045 4.045 13 C -0.051 4.051 14 N -0.220 5.220 15 C 0.218 3.782 16 S -0.607 6.607 17 N -0.275 5.275 18 C 0.002 3.998 19 C -0.188 4.188 20 C -0.168 4.168 21 C -0.168 4.168 22 C -0.074 4.074 23 C -0.205 4.205 24 H 0.095 0.905 25 H 0.120 0.880 26 H 0.148 0.852 27 H 0.270 0.730 28 H 0.260 0.740 29 H 0.129 0.871 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.188 0.812 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 20.278 -20.550 -1.168 28.894 hybrid contribution 0.148 0.311 0.771 0.844 sum 20.426 -20.239 -0.397 28.758 Atomic orbital electron populations 1.69755 1.07118 1.29676 1.49988 1.25357 0.95914 1.02412 0.95383 0.85164 0.79019 0.76969 0.79228 1.19359 1.19158 1.17899 1.20676 0.78173 0.96042 1.52541 0.90631 1.83515 1.21092 1.27344 1.82447 1.19755 0.93365 0.84856 0.93799 1.21008 1.00121 0.93211 1.11270 1.21084 0.94150 0.97273 0.92013 1.17031 0.90688 0.84255 1.13155 1.41709 1.38907 1.14471 1.26900 1.21784 0.88131 0.83127 0.85122 1.93882 1.30437 1.85721 1.50669 1.45009 1.33585 1.15813 1.33054 1.23386 0.99214 0.87422 0.89780 1.23437 0.99895 0.94750 1.00705 1.22681 0.96448 0.98217 0.99459 1.23336 0.96267 0.93968 1.03200 1.20792 1.00357 0.88556 0.97699 1.20293 0.90180 0.99429 1.10569 0.90547 0.87968 0.85221 0.73008 0.73960 0.87092 0.88705 0.92324 0.89761 0.88851 0.90014 0.87319 0.81156 0.83816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.94 13.96 21.61 0.30 -56.64 16 2 C 0.01 0.45 5.49 84.82 0.47 0.91 16 3 Si 0.97 46.01 28.62 68.60 1.96 47.97 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.40 -24.18 9.89 67.91 0.67 -23.51 16 8 H 0.08 4.91 5.54 -2.91 -0.02 4.89 16 9 O -0.24 -13.01 8.58 -22.94 -0.20 -13.21 16 10 C 0.13 6.27 6.65 22.59 0.15 6.42 16 11 C -0.24 -11.23 9.12 22.37 0.20 -11.03 16 12 C -0.02 -0.92 7.86 22.38 0.18 -0.74 16 13 C 0.04 1.28 5.96 38.17 0.23 1.51 16 14 N -0.59 -12.17 5.32 -189.85 -1.01 -13.18 16 15 C 0.58 13.86 7.85 179.05 1.40 15.26 16 16 S -0.74 -27.87 24.19 -56.49 -1.37 -29.23 16 17 N -0.65 -8.92 5.37 -327.04 -1.75 -10.67 16 18 C 0.11 1.58 3.99 45.52 0.18 1.76 16 19 C -0.15 -1.91 7.89 31.18 0.25 -1.67 16 20 C -0.13 -1.08 8.09 31.18 0.25 -0.83 16 21 C -0.13 -0.96 7.83 31.12 0.24 -0.72 16 22 C -0.05 -1.50 9.96 22.38 0.22 -1.28 16 23 C -0.18 -6.68 9.98 22.37 0.22 -6.46 16 24 H 0.28 16.03 8.31 -92.71 -0.77 15.26 16 25 H 0.10 5.52 5.72 -2.91 -0.02 5.50 16 26 H 0.13 5.41 6.02 -9.39 -0.06 5.36 16 27 H 0.43 4.32 8.84 -92.71 -0.82 3.51 16 28 H 0.42 2.10 8.73 -92.71 -0.81 1.29 16 29 H 0.11 2.51 6.64 -2.39 -0.02 2.49 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.11 0.31 8.11 -2.38 -0.02 0.29 16 36 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.14 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -81.18 322.66 2.06 -79.12 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -0.55 Total: 16.19 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 4.67 Total: -20.36 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -2.46 Total: -80.48 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.20 Total: -13.21 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.96 Total: 47.97 kcal Atomic # 16 Polarization: -27.87 SS G_CDS: -1.37 Total: -29.23 kcal Total: -81.18 2.06 -79.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327773806.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.087 kcal (2) G-P(sol) polarization free energy of solvation -81.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds