Wall clock time and date at job start Tue Mar 31 2020 06:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46865 * 2 1 4 4 C 1.53003 * 109.46645 * 240.00596 * 2 1 3 5 5 C 1.50701 * 109.47421 * 59.99864 * 4 2 1 6 6 H 1.07998 * 119.99928 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00020 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99654 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 119.99865 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47371 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47201 * 120.00207 * 9 7 5 12 12 H 1.48508 * 109.47179 * 240.00003 * 9 7 5 13 13 C 1.52992 * 109.47567 * 120.00350 * 2 1 3 14 14 N 1.46502 * 109.47420 * 300.00098 * 13 2 1 15 15 C 1.34770 * 120.00329 * 180.02562 * 14 13 2 16 16 O 1.21626 * 120.00160 * 359.97438 * 15 14 13 17 17 C 1.47314 * 120.00224 * 179.97438 * 15 14 13 18 18 C 1.36570 * 122.95937 * 359.97438 * 17 15 14 19 19 S 1.70590 * 110.55206 * 180.02562 * 18 17 15 20 20 C 1.75688 * 91.86369 * 359.97438 * 19 18 17 21 21 C 1.43204 * 125.05916 * 180.26388 * 20 19 18 22 22 N 9.65283 * 89.20759 * 88.97118 * 2 1 3 23 23 C 1.34874 * 109.88462 * 0.02562 * 20 19 18 24 24 H 1.08998 * 109.46923 * 299.99175 * 1 2 3 25 25 H 1.08994 * 109.47917 * 59.99816 * 1 2 3 26 26 H 1.09004 * 109.46772 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46480 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47202 * 299.99989 * 3 2 1 29 29 H 1.08998 * 109.46676 * 60.00674 * 3 2 1 30 30 H 1.09007 * 109.47163 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.47034 * 299.99225 * 4 2 1 32 32 H 0.97002 * 119.99587 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47277 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.47375 * 60.00001 * 13 2 1 35 35 H 0.97001 * 119.99333 * 0.02562 * 14 13 2 36 36 H 1.07992 * 124.72535 * 0.02562 * 18 17 15 37 37 H 1.08000 * 123.18640 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5375 -0.0107 -2.4798 6 1 0.9163 0.8672 -2.3806 7 6 1.8709 -0.4814 -3.7321 8 7 2.6270 -1.5507 -3.8528 9 14 1.2476 0.3989 -5.2571 10 1 0.4222 1.5654 -4.8529 11 1 2.4023 0.8665 -6.0655 12 1 0.4233 -0.5350 -6.0656 13 6 2.0401 -0.7213 1.2491 14 7 1.5518 -0.0308 2.4454 15 6 1.8779 -0.4910 3.6694 16 8 2.5772 -1.4799 3.7809 17 6 1.3874 0.2036 4.8723 18 6 0.5999 1.3181 4.8176 19 16 0.2185 1.8597 6.3896 20 6 1.1392 0.5561 7.1241 21 6 1.2836 0.3433 8.5329 22 7 1.3965 0.1733 9.6504 23 6 1.6854 -0.2175 6.1637 24 1 -0.3633 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9562 0.8900 30 1 3.1300 -0.7208 -1.2497 31 1 1.6766 -1.7489 -1.2494 32 1 2.8613 -1.8820 -4.7339 33 1 3.1301 -0.7216 1.2488 34 1 1.6768 -1.7490 1.2491 35 1 0.9938 0.7576 2.3564 36 1 0.2653 1.7907 3.9060 37 1 2.2964 -1.0820 6.3774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327999361.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:01 Heat of formation + Delta-G solvation = 7.635694 kcal Electronic energy + Delta-G solvation = -19979.410088 eV Core-core repulsion = 16848.079102 eV Total energy + Delta-G solvation = -3131.330987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.18891 -38.13315 -37.10851 -36.44942 -33.78434 -32.21626 -30.65541 -27.22739 -26.59022 -26.55160 -25.69093 -23.48637 -22.08925 -19.99224 -19.48508 -18.23971 -17.28624 -16.58563 -16.19052 -15.45407 -15.34751 -14.54052 -14.53641 -14.53004 -14.00729 -13.70836 -13.44265 -13.23086 -12.98757 -12.81988 -12.80802 -12.78623 -12.16860 -12.11118 -11.63540 -11.22884 -11.07873 -10.88188 -10.70569 -10.47606 -10.29892 -10.01877 -9.94803 -9.44332 -9.25051 -9.13539 -8.96983 -8.80089 -8.40180 -6.04014 -4.05478 -0.10388 0.63845 1.22595 1.35598 2.47147 2.82550 3.19183 3.27178 3.29785 3.35673 3.37351 3.56490 4.41410 4.45628 4.73784 4.78518 5.23616 5.31617 5.40233 5.48865 5.54920 5.65470 5.70546 6.07636 6.13564 6.21574 6.31135 6.44809 6.55748 6.66303 6.98604 7.00891 7.01630 7.05546 7.57703 7.60547 7.71028 7.94425 8.24923 8.36129 8.99495 9.57967 11.07415 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.041755 B = 0.002793 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.417529 B =10023.959295 C =10498.013679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.035 3.965 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.128 3.872 14 N -0.712 5.712 15 C 0.569 3.431 16 O -0.536 6.536 17 C -0.149 4.149 18 C -0.199 4.199 19 S 0.283 5.717 20 C -0.177 4.177 21 C 0.284 3.716 22 N -0.403 5.403 23 C -0.012 4.012 24 H 0.027 0.973 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.260 0.740 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.397 0.603 36 H 0.182 0.818 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 8.665 17.728 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.005 3.995 14 N -0.364 5.364 15 C 0.353 3.647 16 O -0.415 6.415 17 C -0.166 4.166 18 C -0.339 4.339 19 S 0.551 5.449 20 C -0.297 4.297 21 C -0.033 4.033 22 N -0.081 5.081 23 C -0.046 4.046 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.233 0.767 36 H 0.200 0.800 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.222 8.808 19.943 22.672 hybrid contribution 0.253 -0.353 -2.182 2.225 sum -5.969 8.455 17.760 20.556 Atomic orbital electron populations 1.21771 0.95247 1.01277 1.00190 1.20915 0.95483 0.95873 0.95041 1.21771 1.00677 0.95849 1.00190 1.19104 0.96433 0.95270 0.89427 1.21202 1.31169 1.12096 0.90477 0.92206 1.25020 0.95310 0.95083 0.99128 1.69974 1.36924 1.23009 1.23381 0.86594 0.78612 0.79656 0.83449 1.19816 1.21136 1.21129 1.21701 0.99162 0.96131 0.82499 1.46062 1.52804 1.31815 1.05678 1.17536 0.80598 0.83963 0.82647 1.90819 1.38030 1.25955 1.86659 1.19160 1.04160 0.98339 0.94953 1.26242 1.02561 1.00563 1.04518 1.83191 1.44533 1.23696 0.93516 1.19867 1.13878 1.06501 0.89453 1.24215 0.93919 0.94198 0.90919 1.81315 1.08368 1.07373 1.11003 1.20356 0.96252 0.98778 0.89243 0.95385 0.91333 0.93243 0.93240 0.91337 0.95377 0.96263 0.96264 0.93059 0.91451 0.91457 0.76740 0.80029 0.81809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.05 37.16 0.30 -1.74 16 2 C -0.07 -1.27 0.54 -154.51 -0.08 -1.35 16 3 C -0.13 -2.04 8.05 37.16 0.30 -1.74 16 4 C 0.04 0.82 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -13.05 7.65 -34.44 -0.26 -13.31 16 6 H 0.06 1.46 5.68 -52.49 -0.30 1.17 16 7 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 8 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 9 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.13 2.06 4.56 -4.04 -0.02 2.04 16 14 N -0.71 -9.06 4.93 -61.42 -0.30 -9.37 16 15 C 0.57 7.60 7.79 -12.57 -0.10 7.50 16 16 O -0.54 -9.32 16.69 5.25 0.09 -9.23 16 17 C -0.15 -1.43 5.82 -106.50 -0.62 -2.05 16 18 C -0.20 -1.28 10.40 30.13 0.31 -0.96 16 19 S 0.28 1.51 23.03 -107.50 -2.48 -0.97 16 20 C -0.18 -1.40 6.24 -38.85 -0.24 -1.64 16 21 C 0.28 2.73 15.79 -22.47 -0.35 2.38 16 22 N -0.40 -4.74 18.54 41.84 0.78 -3.97 16 23 C -0.01 -0.11 9.71 -40.47 -0.39 -0.50 16 24 H 0.03 0.34 6.86 -51.93 -0.36 -0.01 16 25 H 0.07 1.20 6.62 -51.93 -0.34 0.85 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.20 6.62 -51.93 -0.34 0.85 16 29 H 0.03 0.34 6.86 -51.93 -0.36 -0.01 16 30 H 0.02 0.49 8.14 -51.92 -0.42 0.06 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.40 3.98 4.62 -40.82 -0.19 3.79 16 36 H 0.18 0.76 6.98 -52.49 -0.37 0.39 16 37 H 0.16 1.52 7.99 -52.49 -0.42 1.10 16 LS Contribution 330.80 15.07 4.99 4.99 Total: -1.00 -31.21 330.80 -6.93 -38.14 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.34 Total: -0.90 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.37 Total: -9.25 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 1.21 Total: -38.39 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.48 Total: -0.97 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.21 -6.93 -38.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327999361.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.775 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds