Wall clock time and date at job start Tue Mar 31 2020 06:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46865 * 2 1 4 4 C 1.53003 * 109.46645 * 240.00596 * 2 1 3 5 5 C 1.50701 * 109.47421 * 59.99864 * 4 2 1 6 6 H 1.07998 * 119.99928 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00020 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99654 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 119.99865 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47371 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47201 * 120.00207 * 9 7 5 12 12 H 1.48508 * 109.47179 * 240.00003 * 9 7 5 13 13 C 1.52992 * 109.47567 * 120.00350 * 2 1 3 14 14 N 1.46502 * 109.47420 * 300.00098 * 13 2 1 15 15 C 1.34770 * 120.00329 * 180.02562 * 14 13 2 16 16 O 1.21626 * 120.00160 * 359.97438 * 15 14 13 17 17 C 1.47314 * 120.00224 * 179.97438 * 15 14 13 18 18 C 1.36570 * 122.95937 * 359.97438 * 17 15 14 19 19 S 1.70590 * 110.55206 * 180.02562 * 18 17 15 20 20 C 1.75688 * 91.86369 * 359.97438 * 19 18 17 21 21 C 1.43204 * 125.05916 * 180.26388 * 20 19 18 22 22 N 9.65283 * 89.20759 * 88.97118 * 2 1 3 23 23 C 1.34874 * 109.88462 * 0.02562 * 20 19 18 24 24 H 1.08998 * 109.46923 * 299.99175 * 1 2 3 25 25 H 1.08994 * 109.47917 * 59.99816 * 1 2 3 26 26 H 1.09004 * 109.46772 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46480 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47202 * 299.99989 * 3 2 1 29 29 H 1.08998 * 109.46676 * 60.00674 * 3 2 1 30 30 H 1.09007 * 109.47163 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.47034 * 299.99225 * 4 2 1 32 32 H 0.97002 * 119.99587 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47277 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.47375 * 60.00001 * 13 2 1 35 35 H 0.97001 * 119.99333 * 0.02562 * 14 13 2 36 36 H 1.07992 * 124.72535 * 0.02562 * 18 17 15 37 37 H 1.08000 * 123.18640 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5375 -0.0107 -2.4798 6 1 0.9163 0.8672 -2.3806 7 6 1.8709 -0.4814 -3.7321 8 7 2.6270 -1.5507 -3.8528 9 14 1.2476 0.3989 -5.2571 10 1 0.4222 1.5654 -4.8529 11 1 2.4023 0.8665 -6.0655 12 1 0.4233 -0.5350 -6.0656 13 6 2.0401 -0.7213 1.2491 14 7 1.5518 -0.0308 2.4454 15 6 1.8779 -0.4910 3.6694 16 8 2.5772 -1.4799 3.7809 17 6 1.3874 0.2036 4.8723 18 6 0.5999 1.3181 4.8176 19 16 0.2185 1.8597 6.3896 20 6 1.1392 0.5561 7.1241 21 6 1.2836 0.3433 8.5329 22 7 1.3965 0.1733 9.6504 23 6 1.6854 -0.2175 6.1637 24 1 -0.3633 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9562 0.8900 30 1 3.1300 -0.7208 -1.2497 31 1 1.6766 -1.7489 -1.2494 32 1 2.8613 -1.8820 -4.7339 33 1 3.1301 -0.7216 1.2488 34 1 1.6768 -1.7490 1.2491 35 1 0.9938 0.7576 2.3564 36 1 0.2653 1.7907 3.9060 37 1 2.2964 -1.0820 6.3774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327999361.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:00 Heat of formation + Delta-G solvation = -11.815235 kcal Electronic energy + Delta-G solvation = -19980.253544 eV Core-core repulsion = 16848.079102 eV Total energy + Delta-G solvation = -3132.174442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18957 -39.12089 -38.30293 -37.30300 -35.26612 -33.96139 -31.41793 -29.06489 -27.89573 -27.75332 -26.46987 -25.07238 -23.30799 -20.98612 -20.12755 -19.60588 -18.33607 -18.13482 -17.27372 -16.63131 -16.44567 -16.27703 -15.43073 -15.39929 -14.98663 -14.97033 -14.73360 -14.37666 -14.06985 -13.89650 -13.84662 -13.72576 -13.52865 -13.38030 -12.86260 -12.66661 -12.53622 -12.28953 -12.23573 -12.18010 -11.91121 -11.48646 -11.19235 -10.87618 -10.77445 -10.49312 -10.15431 -10.00150 -9.57280 -8.11288 -6.18593 -0.69367 0.09173 0.57490 0.66947 1.43969 1.45453 1.56566 1.71429 2.04092 2.20271 2.40134 2.47353 2.82835 3.23766 3.89523 3.95026 4.06613 4.14045 4.14115 4.28111 4.58942 4.74064 4.77855 4.82722 4.87080 5.02557 5.03671 5.16194 5.18908 5.42663 5.50573 5.56773 5.59635 5.62098 5.86164 5.94132 6.29113 6.33653 6.60058 6.97593 7.25458 7.49283 9.01418 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.041755 B = 0.002793 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.417529 B =10023.959295 C =10498.013679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.037 3.963 5 C -0.509 4.509 6 H 0.075 0.925 7 C -0.008 4.008 8 N -0.940 5.940 9 Si 0.957 3.043 10 H -0.254 1.254 11 H -0.287 1.287 12 H -0.287 1.287 13 C 0.141 3.859 14 N -0.699 5.699 15 C 0.570 3.430 16 O -0.588 6.588 17 C -0.178 4.178 18 C -0.179 4.179 19 S 0.382 5.618 20 C -0.197 4.197 21 C 0.304 3.696 22 N -0.448 5.448 23 C -0.017 4.017 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.055 0.945 29 H 0.075 0.925 30 H -0.015 1.015 31 H -0.015 1.015 32 H 0.258 0.742 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.414 0.586 36 H 0.215 0.785 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 12.228 18.528 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.064 4.064 3 C -0.181 4.181 4 C -0.001 4.001 5 C -0.547 4.547 6 H 0.093 0.907 7 C -0.204 4.204 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.178 1.178 11 H -0.213 1.213 12 H -0.213 1.213 13 C 0.017 3.983 14 N -0.352 5.352 15 C 0.357 3.643 16 O -0.469 6.469 17 C -0.194 4.194 18 C -0.319 4.319 19 S 0.650 5.350 20 C -0.317 4.317 21 C -0.011 4.011 22 N -0.126 5.126 23 C -0.052 4.052 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.004 0.996 31 H 0.004 0.996 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.253 0.747 36 H 0.232 0.768 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.773 12.419 20.764 25.736 hybrid contribution 1.002 -1.413 -2.375 2.940 sum -7.771 11.006 18.389 22.796 Atomic orbital electron populations 1.21719 0.93379 1.01059 1.01904 1.20702 0.96849 0.96361 0.92524 1.21719 0.99950 0.94488 1.01904 1.19007 0.94308 0.94259 0.92513 1.21635 1.30092 1.11995 0.90950 0.90685 1.25957 0.95786 0.95903 1.02777 1.70134 1.38974 1.25079 1.23933 0.85507 0.77989 0.78866 0.79330 1.17782 1.21296 1.21289 1.21243 0.97949 0.95469 0.83638 1.45749 1.52924 1.32066 1.04436 1.18051 0.79465 0.83282 0.83526 1.90797 1.40380 1.28387 1.87374 1.18677 1.07369 1.00362 0.93021 1.26690 0.99659 0.98542 1.07039 1.83027 1.40987 1.20082 0.90892 1.19932 1.15267 1.08237 0.88299 1.24407 0.92673 0.92965 0.91097 1.81331 1.09970 1.08861 1.12405 1.20231 0.96497 0.98803 0.89671 0.90612 0.92551 0.94532 0.94532 0.92556 0.90604 0.99633 0.99631 0.93292 0.93427 0.93433 0.74693 0.76829 0.83342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.66 8.05 71.98 0.58 -3.08 16 2 C -0.06 -2.20 0.54 -52.18 -0.03 -2.23 16 3 C -0.12 -3.66 8.05 71.98 0.58 -3.08 16 4 C 0.04 1.79 4.04 29.85 0.12 1.91 16 5 C -0.51 -26.17 7.65 25.60 0.20 -25.98 16 6 H 0.08 3.57 5.68 -2.91 -0.02 3.55 16 7 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 8 N -0.94 -56.24 13.29 21.45 0.28 -55.95 16 9 Si 0.96 42.43 29.54 68.60 2.03 44.46 16 10 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 11 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 13 C 0.14 4.60 4.56 86.38 0.39 5.00 16 14 N -0.70 -16.34 4.93 -466.48 -2.30 -18.64 16 15 C 0.57 14.70 7.79 86.63 0.67 15.38 16 16 O -0.59 -21.10 16.69 -4.11 -0.07 -21.16 16 17 C -0.18 -2.99 5.82 -21.08 -0.12 -3.12 16 18 C -0.18 -1.41 10.40 67.43 0.70 -0.71 16 19 S 0.38 2.22 23.03 -56.49 -1.30 0.92 16 20 C -0.20 -2.68 6.24 22.74 0.14 -2.53 16 21 C 0.30 5.51 15.79 88.33 1.39 6.90 16 22 N -0.45 -10.35 18.54 19.00 0.35 -10.00 16 23 C -0.02 -0.29 9.71 21.70 0.21 -0.08 16 24 H 0.08 1.51 6.86 -2.39 -0.02 1.50 16 25 H 0.06 1.82 6.62 -2.39 -0.02 1.81 16 26 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.82 6.62 -2.39 -0.02 1.81 16 29 H 0.08 1.51 6.86 -2.39 -0.02 1.50 16 30 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 31 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 32 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.41 6.39 4.62 -92.71 -0.43 5.96 16 36 H 0.21 0.25 6.98 -2.91 -0.02 0.23 16 37 H 0.15 2.90 7.99 -2.91 -0.02 2.88 16 Total: -1.00 -73.35 330.80 4.98 -68.37 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 0.68 Total: 3.58 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 5.30 Total: -11.58 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -1.66 Total: -84.59 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.07 Total: -21.16 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.30 Total: 0.92 kcal Total: -73.35 4.98 -68.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327999361.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.558 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds