Wall clock time and date at job start Tue Mar 31 2020 06:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47149 * 2 1 4 4 N 1.46903 * 109.46790 * 119.99636 * 2 1 3 5 5 C 1.46896 * 111.00106 * 274.99630 * 4 2 1 6 6 C 1.52996 * 109.47256 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.47066 * 60.00378 * 6 5 4 8 8 O 1.42903 * 109.47446 * 300.00254 * 6 5 4 9 9 C 1.50702 * 109.47159 * 180.02562 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 6 5 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 6 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 6 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 C 1.50692 * 109.47270 * 239.99671 * 2 1 3 18 18 N 1.27934 * 124.24232 * 104.99983 * 17 2 1 19 19 C 1.34658 * 117.84924 * 180.02562 * 18 17 2 20 20 C 1.40969 * 129.68470 * 179.97438 * 19 18 17 21 21 C 1.36181 * 120.42255 * 179.97438 * 20 19 18 22 22 C 1.38791 * 120.77921 * 0.02562 * 21 20 19 23 23 C 1.37655 * 120.06974 * 0.02562 * 22 21 20 24 24 C 1.39341 * 119.94939 * 359.97423 * 23 22 21 25 25 S 1.70653 * 124.23780 * 284.70110 * 17 2 1 26 26 H 1.09006 * 109.47263 * 300.00517 * 1 2 3 27 27 H 1.09000 * 109.46911 * 60.00335 * 1 2 3 28 28 H 1.08997 * 109.47078 * 180.02562 * 1 2 3 29 29 H 1.00897 * 111.00198 * 38.95332 * 4 2 1 30 30 H 1.09004 * 109.46774 * 60.00282 * 5 4 2 31 31 H 1.09000 * 109.47723 * 300.00671 * 5 4 2 32 32 H 0.96697 * 113.99557 * 300.00558 * 8 6 5 33 33 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 34 34 H 1.07995 * 119.78788 * 359.97438 * 20 19 18 35 35 H 1.08005 * 119.60841 * 180.02562 * 21 20 19 36 36 H 1.08002 * 119.96603 * 179.97438 * 22 21 20 37 37 H 1.07993 * 120.02638 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5961 -0.5327 3.5742 7 1 3.5916 -0.9261 3.3684 8 8 1.7098 -1.6127 3.8743 9 6 2.6600 0.4060 4.7514 10 1 2.3634 1.4381 4.6359 11 6 3.0911 -0.0542 5.9776 12 7 3.1417 0.7636 7.0063 13 14 3.6035 -1.8394 6.1776 14 1 5.0553 -1.9723 5.8955 15 1 3.3270 -2.2809 7.5683 16 1 2.8353 -2.6842 5.2281 17 6 2.0323 -0.7104 -1.2303 18 7 2.5304 -0.1195 -2.2499 19 6 2.9394 -0.8823 -3.2815 20 6 3.5159 -0.5008 -4.5100 21 6 3.8634 -1.4422 -5.4306 22 6 3.6573 -2.7915 -5.1791 23 6 3.0952 -3.1932 -3.9885 24 6 2.7334 -2.2440 -3.0348 25 16 2.0149 -2.4045 -1.4352 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.4495 -1.4978 1.4102 30 1 1.0870 0.6164 2.5525 31 1 2.7588 1.0463 2.1182 32 1 0.8039 -1.3357 4.0682 33 1 3.4453 0.4399 7.8687 34 1 3.6831 0.5448 -4.7225 35 1 4.3046 -1.1352 -6.3674 36 1 3.9375 -3.5270 -5.9187 37 1 2.9348 -4.2433 -3.7938 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332884595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:29 Heat of formation + Delta-G solvation = -16.635339 kcal Electronic energy + Delta-G solvation = -20173.501509 eV Core-core repulsion = 17041.118051 eV Total energy + Delta-G solvation = -3132.383458 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34900 -39.23209 -38.04075 -36.57439 -34.41451 -32.36727 -32.06356 -30.35021 -29.41266 -26.63977 -25.62581 -24.23101 -22.86424 -22.39728 -21.55620 -19.49398 -19.30522 -17.75066 -17.18551 -16.83152 -16.45081 -16.31056 -16.02546 -15.92954 -15.42475 -15.21670 -14.86354 -14.67591 -14.62572 -13.93916 -13.64776 -13.44960 -13.22798 -12.97463 -12.86976 -12.68377 -12.62891 -12.44292 -12.32779 -11.87742 -11.77817 -11.10292 -11.09108 -10.81774 -10.67976 -10.18912 -9.63807 -9.44947 -9.08539 -8.34731 -6.49483 -0.57330 0.18252 0.28374 0.77352 1.34072 1.42467 1.47321 1.76967 2.45145 2.59722 2.73436 3.03521 3.37998 3.61808 3.86367 3.96722 4.07331 4.09910 4.19653 4.31910 4.36263 4.40971 4.44203 4.64408 4.68281 4.77128 4.92993 4.99693 5.10199 5.17301 5.28121 5.40079 5.43005 5.53482 5.80371 5.93824 6.07852 6.39625 6.60983 6.64534 7.20346 7.35423 8.79343 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.003395 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.728584 B = 8245.480720 C = 8533.119936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.152 3.848 3 H 0.097 0.903 4 N -0.684 5.684 5 C 0.064 3.936 6 C 0.206 3.794 7 H 0.051 0.949 8 O -0.579 6.579 9 C -0.565 4.565 10 H 0.039 0.961 11 C 0.028 3.972 12 N -0.940 5.940 13 Si 0.939 3.061 14 H -0.290 1.290 15 H -0.298 1.298 16 H -0.200 1.200 17 C 0.104 3.896 18 N -0.501 5.501 19 C 0.050 3.950 20 C -0.085 4.085 21 C -0.099 4.099 22 C -0.096 4.096 23 C -0.082 4.082 24 C -0.211 4.211 25 S 0.132 5.868 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.353 0.647 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.368 0.632 33 H 0.267 0.733 34 H 0.138 0.862 35 H 0.169 0.831 36 H 0.172 0.828 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.655 -9.034 -26.339 28.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.038 3.962 3 H 0.115 0.885 4 N -0.318 5.318 5 C -0.065 4.065 6 C 0.148 3.852 7 H 0.069 0.931 8 O -0.386 6.386 9 C -0.603 4.603 10 H 0.057 0.943 11 C -0.172 4.172 12 N -0.580 5.580 13 Si 0.764 3.236 14 H -0.217 1.217 15 H -0.225 1.225 16 H -0.122 1.122 17 C -0.181 4.181 18 N -0.216 5.216 19 C -0.070 4.070 20 C -0.106 4.106 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.104 4.104 24 C -0.330 4.330 25 S 0.389 5.611 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.173 0.827 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.216 0.784 33 H 0.075 0.925 34 H 0.156 0.844 35 H 0.186 0.814 36 H 0.189 0.811 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.747 -9.495 -25.727 27.561 hybrid contribution -0.542 0.911 0.511 1.177 sum -3.290 -8.585 -25.216 26.840 Atomic orbital electron populations 1.22424 0.92895 1.03673 1.03807 1.20092 0.94573 0.96946 0.84584 0.88526 1.60309 1.57878 1.10335 1.03233 1.22301 0.99818 0.94769 0.89641 1.19524 0.90409 0.85013 0.90235 0.93129 1.86626 1.23665 1.36346 1.91946 1.21814 1.45839 0.97335 0.95270 0.94309 1.25857 0.93544 1.02475 0.95294 1.70082 1.47799 1.38117 1.01968 0.85991 0.78333 0.81645 0.77678 1.21721 1.22545 1.12168 1.26789 0.98389 0.95357 0.97520 1.66126 1.14464 1.39637 1.01346 1.19609 1.03425 0.88240 0.95751 1.20694 0.98074 1.01728 0.90111 1.21171 0.98394 0.92573 0.99835 1.21623 0.96820 0.96992 0.96337 1.20760 0.98430 0.98764 0.92461 1.24305 1.09641 0.98629 1.00466 1.83790 1.60941 1.06821 1.09519 0.90413 0.90977 0.90932 0.82663 0.94110 0.91894 0.78402 0.92473 0.84404 0.81379 0.81057 0.83285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 9.14 71.98 0.66 -3.06 16 2 C 0.15 4.24 3.08 44.17 0.14 4.38 16 3 H 0.10 2.90 7.80 -2.39 -0.02 2.89 16 4 N -0.68 -21.53 6.00 -495.47 -2.97 -24.50 16 5 C 0.06 2.34 5.13 86.30 0.44 2.78 16 6 C 0.21 9.17 2.59 29.85 0.08 9.25 16 7 H 0.05 2.41 7.58 -2.38 -0.02 2.40 16 8 O -0.58 -23.44 9.47 -148.98 -1.41 -24.85 16 9 C -0.56 -31.05 9.34 25.60 0.24 -30.82 16 10 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 11 C 0.03 1.61 5.47 84.66 0.46 2.07 16 12 N -0.94 -58.26 13.96 21.45 0.30 -57.96 16 13 Si 0.94 45.00 26.99 68.60 1.85 46.85 16 14 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 15 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 16 H -0.20 -8.98 5.30 99.48 0.53 -8.45 16 17 C 0.10 3.06 6.23 88.67 0.55 3.61 16 18 N -0.50 -15.81 10.57 -182.52 -1.93 -17.74 16 19 C 0.05 1.38 7.00 39.79 0.28 1.66 16 20 C -0.09 -1.78 10.05 22.46 0.23 -1.56 16 21 C -0.10 -1.37 9.94 21.92 0.22 -1.15 16 22 C -0.10 -1.22 10.04 22.26 0.22 -1.00 16 23 C -0.08 -1.45 10.07 22.40 0.23 -1.22 16 24 C -0.21 -5.28 6.56 22.94 0.15 -5.13 16 25 S 0.13 3.38 22.85 -56.49 -1.29 2.09 16 26 H 0.08 1.67 7.45 -2.38 -0.02 1.65 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16 29 H 0.35 10.41 7.86 -89.70 -0.71 9.70 16 30 H 0.04 1.41 7.44 -2.38 -0.02 1.39 16 31 H 0.06 2.45 8.06 -2.39 -0.02 2.43 16 32 H 0.37 12.82 9.04 -74.06 -0.67 12.15 16 33 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 34 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 36 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -70.67 324.00 -2.01 -72.69 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -0.45 Total: 23.61 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 3.89 Total: -20.19 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -4.60 Total: -100.19 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -1.41 Total: -24.85 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.85 Total: 46.85 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.29 Total: 2.09 kcal Total: -70.67 -2.01 -72.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332884595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.050 kcal (2) G-P(sol) polarization free energy of solvation -70.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds