Wall clock time and date at job start Tue Mar 31 2020 06:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47499 * 2 1 4 4 N 1.46903 * 109.47321 * 240.00149 * 2 1 3 5 5 C 1.46896 * 111.00106 * 84.99663 * 4 2 1 6 6 C 1.52996 * 109.47256 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.47066 * 60.00378 * 6 5 4 8 8 O 1.42903 * 109.47446 * 300.00254 * 6 5 4 9 9 C 1.50702 * 109.47159 * 180.02562 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 6 5 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 6 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 6 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 C 1.50697 * 109.47277 * 120.00301 * 2 1 3 18 18 N 1.27933 * 124.24062 * 74.69485 * 17 2 1 19 19 C 1.34664 * 117.84376 * 179.77495 * 18 17 2 20 20 C 1.40966 * 129.68189 * 180.19175 * 19 18 17 21 21 C 1.36180 * 120.42300 * 180.30986 * 20 19 18 22 22 C 1.38792 * 120.77622 * 0.02562 * 21 20 19 23 23 C 1.37652 * 120.07122 * 359.97438 * 22 21 20 24 24 C 1.39342 * 119.95146 * 0.02562 * 23 22 21 25 25 S 1.70653 * 124.23795 * 255.00129 * 17 2 1 26 26 H 1.09000 * 109.47206 * 299.99902 * 1 2 3 27 27 H 1.09002 * 109.46947 * 59.99698 * 1 2 3 28 28 H 1.09002 * 109.47432 * 179.97438 * 1 2 3 29 29 H 1.00900 * 110.99721 * 321.04965 * 4 2 1 30 30 H 1.09004 * 109.46774 * 60.00282 * 5 4 2 31 31 H 1.09000 * 109.47723 * 300.00671 * 5 4 2 32 32 H 0.96697 * 113.99557 * 300.00558 * 8 6 5 33 33 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 34 34 H 1.07998 * 119.79113 * 0.32755 * 20 19 18 35 35 H 1.07996 * 119.61254 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.96542 * 180.02562 * 22 21 20 37 37 H 1.07992 * 120.02531 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5950 -0.5331 -3.5745 7 1 1.9183 -1.3565 -3.8030 8 8 3.8999 -1.0498 -3.3053 9 6 2.6600 0.4058 -4.7515 10 1 2.3655 1.4384 -4.6354 11 6 3.1013 -0.0519 -5.9750 12 7 3.1631 0.7688 -7.0007 13 14 3.6111 -1.8377 -6.1755 14 1 2.4325 -2.6470 -6.5768 15 1 4.6602 -1.9385 -7.2218 16 1 4.1463 -2.3474 -4.8874 17 6 2.0323 -0.7104 1.2304 18 7 2.0091 -1.9797 1.3886 19 6 2.4968 -2.4790 2.5402 20 6 2.5962 -3.8179 2.9702 21 6 3.1230 -4.1128 4.1908 22 6 3.5705 -3.1049 5.0336 23 6 3.4858 -1.7885 4.6401 24 6 2.9497 -1.4678 3.3946 25 16 2.6966 0.0779 2.5903 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.4495 -1.4978 -1.4101 30 1 2.7588 1.0462 -2.1182 31 1 1.0871 0.6164 -2.5526 32 1 4.5555 -0.3712 -3.0935 33 1 3.4732 0.4467 -7.8615 34 1 2.2528 -4.6148 2.3273 35 1 3.1933 -5.1431 4.5069 36 1 3.9864 -3.3537 5.9988 37 1 3.8346 -1.0049 5.2962 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332884601.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:31 Heat of formation + Delta-G solvation = 9.529860 kcal Electronic energy + Delta-G solvation = -20229.413405 eV Core-core repulsion = 17098.164555 eV Total energy + Delta-G solvation = -3131.248849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.46061 -37.95543 -36.61242 -35.08617 -32.21236 -31.29918 -31.04623 -29.22639 -27.71145 -25.51769 -24.18240 -23.22952 -22.32918 -20.62115 -20.03259 -18.65077 -17.28431 -16.62118 -16.09329 -15.48521 -15.14317 -14.93239 -14.58280 -14.46822 -14.37854 -14.00057 -13.69588 -13.33546 -12.85080 -12.63591 -12.61525 -12.25602 -12.03772 -11.76537 -11.50007 -11.36051 -11.23907 -11.01598 -10.89619 -10.35991 -10.25516 -9.93826 -9.58855 -9.02786 -8.75275 -8.60405 -8.25308 -8.24107 -7.94498 -6.12134 -4.23644 0.33309 0.96334 1.15323 1.65701 2.28943 3.41692 3.51355 3.55144 3.80114 3.82610 4.41405 4.53846 4.56651 4.68928 4.82670 4.97554 5.05381 5.13068 5.15513 5.23752 5.36042 5.60074 5.68907 5.71638 5.90436 5.94623 5.99622 6.01906 6.12181 6.16950 6.23041 6.51476 6.60355 7.26023 7.33661 7.60265 7.68023 7.78658 8.30137 8.84223 9.13256 9.53121 10.98378 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025102 B = 0.003554 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.200303 B = 7876.319106 C = 8456.553640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.153 3.847 3 H 0.098 0.902 4 N -0.666 5.666 5 C 0.043 3.957 6 C 0.200 3.800 7 H 0.051 0.949 8 O -0.570 6.570 9 C -0.565 4.565 10 H 0.071 0.929 11 C 0.084 3.916 12 N -0.894 5.894 13 Si 0.871 3.129 14 H -0.288 1.288 15 H -0.296 1.296 16 H -0.215 1.215 17 C 0.127 3.873 18 N -0.454 5.454 19 C 0.090 3.910 20 C -0.065 4.065 21 C -0.109 4.109 22 C -0.110 4.110 23 C -0.071 4.071 24 C -0.188 4.188 25 S 0.088 5.912 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.348 0.652 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.354 0.646 33 H 0.265 0.735 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.255 -4.614 24.833 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.038 3.962 3 H 0.116 0.884 4 N -0.298 5.298 5 C -0.085 4.085 6 C 0.142 3.858 7 H 0.069 0.931 8 O -0.375 6.375 9 C -0.603 4.603 10 H 0.090 0.910 11 C -0.121 4.121 12 N -0.531 5.531 13 Si 0.698 3.302 14 H -0.215 1.215 15 H -0.223 1.223 16 H -0.137 1.137 17 C -0.159 4.159 18 N -0.167 5.167 19 C -0.031 4.031 20 C -0.086 4.086 21 C -0.131 4.131 22 C -0.132 4.132 23 C -0.093 4.093 24 C -0.307 4.307 25 S 0.345 5.655 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.167 0.833 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.200 0.800 33 H 0.074 0.926 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.900 -4.327 24.461 24.913 hybrid contribution -0.427 -0.950 -0.278 1.078 sum -2.327 -5.278 24.183 24.861 Atomic orbital electron populations 1.22483 0.94977 1.03254 1.02855 1.20192 0.93235 0.96183 0.86543 0.88398 1.60369 1.56851 1.09745 1.02806 1.22763 0.99681 0.95454 0.90641 1.19694 0.82540 0.93418 0.90164 0.93085 1.86676 1.20833 1.38029 1.91982 1.21489 1.47132 0.98061 0.93632 0.91041 1.24985 0.93330 0.98464 0.95294 1.69957 1.45767 1.35956 1.01427 0.87023 0.78421 0.85018 0.79780 1.21502 1.22306 1.13732 1.26907 0.97926 0.91725 0.99367 1.66093 1.18678 1.12104 1.19788 1.19298 0.99859 0.94990 0.88959 1.20423 0.98722 0.93150 0.96282 1.20706 0.98752 0.99878 0.93721 1.21087 1.00101 0.91968 1.00019 1.20318 0.98750 0.97099 0.93179 1.23889 1.09011 0.96473 1.01316 1.83889 1.62342 1.07535 1.11726 0.92086 0.90897 0.91495 0.83285 0.91350 0.94942 0.79973 0.92586 0.84837 0.84960 0.84988 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 9.14 37.15 0.34 -1.75 16 2 C 0.15 2.12 3.07 -68.87 -0.21 1.91 16 3 H 0.10 1.27 7.79 -51.93 -0.40 0.86 16 4 N -0.67 -11.24 6.05 -107.96 -0.65 -11.89 16 5 C 0.04 0.81 5.08 -3.83 -0.02 0.80 16 6 C 0.20 4.62 2.52 -27.88 -0.07 4.55 16 7 H 0.05 1.22 7.58 -51.93 -0.39 0.83 16 8 O -0.57 -13.27 10.00 -35.23 -0.35 -13.63 16 9 C -0.57 -15.53 9.34 -34.44 -0.32 -15.85 16 10 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 11 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 12 N -0.89 -27.31 13.96 55.43 0.77 -26.53 16 13 Si 0.87 22.08 26.99 -169.99 -4.59 17.49 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 16 H -0.22 -5.40 5.30 56.52 0.30 -5.10 16 17 C 0.13 1.83 6.16 -13.90 -0.09 1.74 16 18 N -0.45 -7.13 10.51 -9.08 -0.10 -7.22 16 19 C 0.09 1.27 7.00 -84.96 -0.59 0.68 16 20 C -0.07 -0.75 10.05 -39.29 -0.39 -1.15 16 21 C -0.11 -0.97 9.94 -40.12 -0.40 -1.37 16 22 C -0.11 -0.92 10.04 -39.59 -0.40 -1.31 16 23 C -0.07 -0.70 10.07 -39.38 -0.40 -1.10 16 24 C -0.19 -2.38 6.56 -38.54 -0.25 -2.63 16 25 S 0.09 1.07 23.10 -107.50 -2.48 -1.41 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.86 7.45 -51.93 -0.39 0.47 16 28 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 29 H 0.35 5.96 8.47 -39.29 -0.33 5.63 16 30 H 0.07 1.28 8.06 -51.93 -0.42 0.86 16 31 H 0.03 0.59 7.44 -51.93 -0.39 0.21 16 32 H 0.35 7.48 9.04 45.56 0.41 7.89 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 325.18 15.07 4.90 4.90 Total: -1.00 -32.64 325.18 -9.50 -42.15 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -4.10 Total: 9.33 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -2.90 Total: -13.17 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.02 Total: -45.65 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.35 Total: -13.63 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.59 Total: 17.49 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.48 Total: -1.41 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.64 -9.50 -42.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332884601.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.677 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds