Wall clock time and date at job start Tue Mar 31 2020 06:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47499 * 2 1 4 4 N 1.46903 * 109.47321 * 240.00149 * 2 1 3 5 5 C 1.46896 * 111.00106 * 84.99663 * 4 2 1 6 6 C 1.52996 * 109.47256 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.47066 * 60.00378 * 6 5 4 8 8 O 1.42903 * 109.47446 * 300.00254 * 6 5 4 9 9 C 1.50702 * 109.47159 * 180.02562 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 6 5 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 6 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 6 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 C 1.50697 * 109.47277 * 120.00301 * 2 1 3 18 18 N 1.27933 * 124.24062 * 74.69485 * 17 2 1 19 19 C 1.34664 * 117.84376 * 179.77495 * 18 17 2 20 20 C 1.40966 * 129.68189 * 180.19175 * 19 18 17 21 21 C 1.36180 * 120.42300 * 180.30986 * 20 19 18 22 22 C 1.38792 * 120.77622 * 0.02562 * 21 20 19 23 23 C 1.37652 * 120.07122 * 359.97438 * 22 21 20 24 24 C 1.39342 * 119.95146 * 0.02562 * 23 22 21 25 25 S 1.70653 * 124.23795 * 255.00129 * 17 2 1 26 26 H 1.09000 * 109.47206 * 299.99902 * 1 2 3 27 27 H 1.09002 * 109.46947 * 59.99698 * 1 2 3 28 28 H 1.09002 * 109.47432 * 179.97438 * 1 2 3 29 29 H 1.00900 * 110.99721 * 321.04965 * 4 2 1 30 30 H 1.09004 * 109.46774 * 60.00282 * 5 4 2 31 31 H 1.09000 * 109.47723 * 300.00671 * 5 4 2 32 32 H 0.96697 * 113.99557 * 300.00558 * 8 6 5 33 33 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 34 34 H 1.07998 * 119.79113 * 0.32755 * 20 19 18 35 35 H 1.07996 * 119.61254 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.96542 * 180.02562 * 22 21 20 37 37 H 1.07992 * 120.02531 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5950 -0.5331 -3.5745 7 1 1.9183 -1.3565 -3.8030 8 8 3.8999 -1.0498 -3.3053 9 6 2.6600 0.4058 -4.7515 10 1 2.3655 1.4384 -4.6354 11 6 3.1013 -0.0519 -5.9750 12 7 3.1631 0.7688 -7.0007 13 14 3.6111 -1.8377 -6.1755 14 1 2.4325 -2.6470 -6.5768 15 1 4.6602 -1.9385 -7.2218 16 1 4.1463 -2.3474 -4.8874 17 6 2.0323 -0.7104 1.2304 18 7 2.0091 -1.9797 1.3886 19 6 2.4968 -2.4790 2.5402 20 6 2.5962 -3.8179 2.9702 21 6 3.1230 -4.1128 4.1908 22 6 3.5705 -3.1049 5.0336 23 6 3.4858 -1.7885 4.6401 24 6 2.9497 -1.4678 3.3946 25 16 2.6966 0.0779 2.5903 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.4495 -1.4978 -1.4101 30 1 2.7588 1.0462 -2.1182 31 1 1.0871 0.6164 -2.5526 32 1 4.5555 -0.3712 -3.0935 33 1 3.4732 0.4467 -7.8615 34 1 2.2528 -4.6148 2.3273 35 1 3.1933 -5.1431 4.5069 36 1 3.9864 -3.3537 5.9988 37 1 3.8346 -1.0049 5.2962 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332884601.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:31 Heat of formation + Delta-G solvation = -14.982206 kcal Electronic energy + Delta-G solvation = -20230.476328 eV Core-core repulsion = 17098.164555 eV Total energy + Delta-G solvation = -3132.311772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34567 -39.13947 -37.98349 -36.45658 -34.39921 -32.36415 -32.05810 -30.23471 -29.39398 -26.60441 -25.73736 -24.16532 -23.21559 -22.39481 -21.05476 -19.59112 -19.26903 -17.52191 -17.29370 -16.84975 -16.37244 -16.25755 -15.96840 -15.89796 -15.56526 -15.10738 -14.79389 -14.72845 -14.68236 -13.87594 -13.59467 -13.42635 -13.17430 -12.93459 -12.85029 -12.82267 -12.64020 -12.43829 -12.27295 -11.84165 -11.78140 -11.10846 -11.08289 -10.80795 -10.61389 -10.11350 -9.61909 -9.29390 -9.09540 -8.35393 -6.49307 -0.55282 0.19027 0.25293 0.71130 1.39322 1.40287 1.45245 1.76698 2.44493 2.73311 2.90141 3.03317 3.24164 3.62244 3.83401 4.00188 4.08680 4.13570 4.16198 4.32125 4.35721 4.37747 4.52219 4.59736 4.73065 4.78852 4.94033 4.99650 5.10967 5.21942 5.28851 5.43765 5.45276 5.49841 5.81350 6.02989 6.09312 6.38570 6.64091 6.70549 7.23107 7.38091 8.78621 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025102 B = 0.003554 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.200303 B = 7876.319106 C = 8456.553640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.154 3.846 3 H 0.106 0.894 4 N -0.672 5.672 5 C 0.060 3.940 6 C 0.205 3.795 7 H 0.047 0.953 8 O -0.575 6.575 9 C -0.563 4.563 10 H 0.042 0.958 11 C 0.030 3.970 12 N -0.939 5.939 13 Si 0.937 3.063 14 H -0.286 1.286 15 H -0.298 1.298 16 H -0.210 1.210 17 C 0.103 3.897 18 N -0.481 5.481 19 C 0.050 3.950 20 C -0.086 4.086 21 C -0.100 4.100 22 C -0.096 4.096 23 C -0.080 4.080 24 C -0.205 4.205 25 S 0.112 5.888 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.345 0.655 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.365 0.635 33 H 0.267 0.733 34 H 0.134 0.866 35 H 0.166 0.834 36 H 0.172 0.828 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 -5.970 27.845 28.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.040 3.960 3 H 0.124 0.876 4 N -0.304 5.304 5 C -0.069 4.069 6 C 0.146 3.854 7 H 0.065 0.935 8 O -0.382 6.382 9 C -0.601 4.601 10 H 0.060 0.940 11 C -0.170 4.170 12 N -0.579 5.579 13 Si 0.762 3.238 14 H -0.212 1.212 15 H -0.225 1.225 16 H -0.132 1.132 17 C -0.183 4.183 18 N -0.195 5.195 19 C -0.069 4.069 20 C -0.107 4.107 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.103 4.103 24 C -0.324 4.324 25 S 0.369 5.631 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.164 0.836 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.212 0.788 33 H 0.075 0.925 34 H 0.152 0.848 35 H 0.184 0.816 36 H 0.189 0.811 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.333 -5.677 27.496 28.107 hybrid contribution -0.576 -0.541 -1.042 1.308 sum -1.909 -6.218 26.454 27.242 Atomic orbital electron populations 1.22392 0.93589 1.03021 1.03731 1.20246 0.94400 0.96158 0.85205 0.87584 1.60257 1.57682 1.09516 1.02939 1.22386 0.99622 0.95013 0.89870 1.19537 0.82695 0.92631 0.90517 0.93518 1.86613 1.21058 1.38513 1.91970 1.21824 1.45587 0.97521 0.95154 0.94011 1.25803 0.93743 1.02232 0.95218 1.70073 1.47769 1.37888 1.02122 0.86007 0.77879 0.80344 0.79577 1.21224 1.22488 1.13180 1.26854 0.99180 0.91957 1.00280 1.66058 1.19336 1.12931 1.21147 1.19658 1.01633 0.96405 0.89240 1.20690 0.99913 0.92355 0.97734 1.21153 0.96682 1.01862 0.92389 1.21612 0.98046 0.90997 1.01118 1.20755 0.98367 0.98738 0.92450 1.24193 1.09648 0.96167 1.02360 1.83609 1.61802 1.07172 1.10480 0.90307 0.90818 0.92261 0.83610 0.91276 0.94548 0.78845 0.92466 0.84825 0.81635 0.81060 0.83071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 9.14 71.98 0.66 -3.21 16 2 C 0.15 4.19 3.07 44.17 0.14 4.33 16 3 H 0.11 2.66 7.79 -2.38 -0.02 2.64 16 4 N -0.67 -22.45 6.05 -495.46 -3.00 -25.45 16 5 C 0.06 2.25 5.08 86.30 0.44 2.68 16 6 C 0.20 9.38 2.52 29.85 0.08 9.45 16 7 H 0.05 2.20 7.58 -2.38 -0.02 2.19 16 8 O -0.58 -26.20 10.00 -148.98 -1.49 -27.68 16 9 C -0.56 -31.28 9.34 25.60 0.24 -31.04 16 10 H 0.04 2.52 7.99 -2.91 -0.02 2.50 16 11 C 0.03 1.73 5.47 84.66 0.46 2.19 16 12 N -0.94 -58.44 13.96 21.45 0.30 -58.14 16 13 Si 0.94 46.06 26.99 68.60 1.85 47.91 16 14 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 15 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 16 H -0.21 -10.05 5.30 99.48 0.53 -9.52 16 17 C 0.10 2.93 6.16 88.68 0.55 3.48 16 18 N -0.48 -15.17 10.51 -182.51 -1.92 -17.09 16 19 C 0.05 1.40 7.00 39.78 0.28 1.68 16 20 C -0.09 -1.89 10.05 22.46 0.23 -1.67 16 21 C -0.10 -1.46 9.94 21.92 0.22 -1.24 16 22 C -0.10 -1.22 10.04 22.26 0.22 -0.99 16 23 C -0.08 -1.36 10.07 22.40 0.23 -1.14 16 24 C -0.20 -4.93 6.56 22.94 0.15 -4.78 16 25 S 0.11 2.63 23.10 -56.49 -1.30 1.32 16 26 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.68 7.45 -2.39 -0.02 1.66 16 28 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 29 H 0.34 11.80 8.47 -89.69 -0.76 11.04 16 30 H 0.07 2.56 8.06 -2.38 -0.02 2.54 16 31 H 0.04 1.32 7.44 -2.39 -0.02 1.30 16 32 H 0.36 15.04 9.04 -74.06 -0.67 14.37 16 33 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 34 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -71.21 325.18 -2.19 -73.40 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -0.51 Total: 25.99 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 3.88 Total: -20.26 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -4.62 Total: -100.68 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -1.49 Total: -27.68 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.85 Total: 47.91 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.30 Total: 1.32 kcal Total: -71.21 -2.19 -73.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332884601.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.420 kcal (2) G-P(sol) polarization free energy of solvation -71.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds