Wall clock time and date at job start Tue Mar 31 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86803 * 120.00024 * 2 1 4 4 H 1.48496 * 109.47492 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46861 * 300.00467 * 3 2 1 6 6 H 1.48500 * 109.47107 * 59.99760 * 3 2 1 7 7 C 1.38627 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99517 * 179.97438 * 7 2 1 9 9 O 1.34808 * 119.99751 * 0.02562 * 7 2 1 10 10 C 1.35788 * 116.99738 * 185.47383 * 9 7 2 11 11 C 1.38906 * 119.99780 * 6.45350 * 10 9 7 12 12 C 1.38002 * 120.00468 * 180.02562 * 11 10 9 13 13 C 1.38929 * 119.99272 * 359.97438 * 12 11 10 14 14 N 1.39966 * 119.99642 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99433 * 135.68371 * 14 13 12 16 16 S 1.71201 * 120.00161 * 3.18367 * 15 14 13 17 17 N 1.34777 * 119.99968 * 183.19006 * 15 14 13 18 18 C 1.46500 * 120.00235 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47304 * 179.97438 * 18 17 15 20 20 C 1.53000 * 117.49742 * 243.61912 * 19 18 17 21 21 C 1.52998 * 60.00347 * 252.51268 * 20 19 18 22 22 C 1.38924 * 119.99629 * 0.28088 * 13 12 11 23 23 C 1.38000 * 120.00158 * 359.44259 * 22 13 12 24 24 H 0.97002 * 120.00292 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99824 * 359.97438 * 11 10 9 26 26 H 1.07998 * 119.99916 * 179.97438 * 12 11 10 27 27 H 0.96996 * 120.00719 * 315.40758 * 14 13 12 28 28 H 0.97002 * 120.00124 * 359.97438 * 17 15 14 29 29 H 1.09004 * 109.46733 * 300.00029 * 18 17 15 30 30 H 1.09004 * 109.46871 * 59.99070 * 18 17 15 31 31 H 1.08991 * 115.55052 * 29.32473 * 19 18 17 32 32 H 1.09001 * 117.49745 * 0.02562 * 20 19 18 33 33 H 1.09001 * 117.50209 * 145.01788 * 20 19 18 34 34 H 1.08998 * 117.49552 * 252.51778 * 21 20 19 35 35 H 1.08993 * 117.50308 * 107.48892 * 21 20 19 36 36 H 1.08001 * 119.99769 * 179.72020 * 22 13 12 37 37 H 1.07995 * 120.00329 * 180.27824 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7098 1.3465 -0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2004 -0.0010 9 8 1.3348 -2.3680 -0.0016 10 6 2.0696 -3.5041 0.1134 11 6 3.4345 -3.4266 0.3593 12 6 4.1814 -4.5811 0.4756 13 6 3.5680 -5.8210 0.3472 14 7 4.3256 -6.9920 0.4646 15 6 3.8603 -8.0253 1.1943 16 16 2.3076 -7.9372 1.9100 17 7 4.6174 -9.1279 1.3606 18 6 4.1114 -10.2512 2.1532 19 6 5.1583 -11.3665 2.1836 20 6 4.7858 -12.7028 1.5381 21 6 4.8668 -12.5854 3.0614 22 6 2.2039 -5.8984 0.0959 23 6 1.4561 -4.7438 -0.0147 24 1 -0.4851 0.8400 0.0004 25 1 3.9113 -2.4626 0.4587 26 1 5.2427 -4.5207 0.6665 27 1 5.1837 -7.0615 0.0177 28 1 5.4970 -9.1779 0.9549 29 1 3.9077 -9.9157 3.1702 30 1 3.1924 -10.6280 1.7041 31 1 6.1951 -11.0403 2.1035 32 1 3.7951 -12.7871 1.0914 33 1 5.5777 -13.2559 1.0330 34 1 5.7121 -13.0611 3.5585 35 1 3.9293 -12.5926 3.6173 36 1 1.7279 -6.8622 -0.0084 37 1 0.3949 -4.8040 -0.2055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333143618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:34 Heat of formation + Delta-G solvation = 50.016104 kcal Electronic energy + Delta-G solvation = -19636.146805 eV Core-core repulsion = 16506.653571 eV Total energy + Delta-G solvation = -3129.493234 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.77095 -38.80843 -37.83725 -36.30189 -34.12261 -32.20663 -30.26084 -28.64775 -26.83454 -25.30425 -23.88210 -22.82875 -21.99480 -21.72350 -20.91498 -18.45652 -18.07098 -17.80571 -16.86326 -16.13489 -15.59690 -15.26126 -14.63223 -14.55868 -14.37738 -14.32146 -13.73607 -13.51925 -13.02708 -12.75365 -12.44350 -11.98783 -11.92379 -11.71823 -11.53487 -11.40939 -11.06529 -10.94660 -10.89139 -10.63751 -10.53091 -10.42426 -9.57475 -9.26983 -8.78321 -8.30041 -7.69839 -7.19480 -6.66528 -6.45586 -4.03369 1.33453 2.02071 2.26362 2.40385 2.66458 3.12611 3.13645 3.19269 3.28952 3.56656 3.96223 4.16145 4.43027 4.50103 4.57654 4.71166 5.10254 5.19077 5.23249 5.32787 5.41960 5.46001 5.51956 5.66404 5.68573 5.80521 5.85906 6.11478 6.22943 6.47814 6.53481 6.86071 6.91895 7.07747 7.16647 7.25897 7.45900 7.48463 7.84586 7.99138 8.99492 9.69912 10.72045 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.049769 B = 0.002690 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.462990 B =10408.252123 C =10709.729914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.164 3.836 11 C -0.233 4.233 12 C -0.067 4.067 13 C 0.004 3.996 14 N -0.608 5.608 15 C 0.551 3.449 16 S -0.630 6.630 17 N -0.690 5.690 18 C 0.159 3.841 19 C -0.176 4.176 20 C -0.177 4.177 21 C -0.165 4.165 22 C -0.016 4.016 23 C -0.189 4.189 24 H 0.270 0.730 25 H 0.131 0.869 26 H 0.107 0.893 27 H 0.397 0.603 28 H 0.394 0.606 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.138 0.862 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.939 -19.988 1.068 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.074 6.074 10 C 0.109 3.891 11 C -0.253 4.253 12 C -0.088 4.088 13 C -0.088 4.088 14 N -0.229 5.229 15 C 0.192 3.808 16 S -0.502 6.502 17 N -0.320 5.320 18 C 0.035 3.965 19 C -0.195 4.195 20 C -0.214 4.214 21 C -0.203 4.203 22 C -0.038 4.038 23 C -0.209 4.209 24 H 0.080 0.920 25 H 0.149 0.851 26 H 0.125 0.875 27 H 0.233 0.767 28 H 0.230 0.770 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.155 0.845 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.377 -19.760 1.613 23.372 hybrid contribution 2.305 0.726 -0.611 2.493 sum 14.683 -19.034 1.002 24.060 Atomic orbital electron populations 1.70059 1.05960 1.27654 1.45597 1.25315 0.95856 0.98902 0.96521 0.85642 0.79089 0.80372 0.78273 1.19121 1.20139 1.20113 1.21374 0.91817 0.80847 1.52653 0.88970 1.84012 1.34354 1.11524 1.77522 1.19501 0.90238 0.88021 0.91368 1.20888 0.94271 0.98145 1.12010 1.20433 0.98463 0.90772 0.99083 1.16940 0.91922 0.82621 1.17305 1.42078 1.21751 1.12888 1.46232 1.22372 0.93615 0.81677 0.83129 1.93464 1.04350 1.90045 1.62296 1.44861 1.18788 1.15370 1.53031 1.21213 0.95679 0.82808 0.96765 1.22471 0.99826 0.89874 1.07351 1.23127 1.03391 0.99105 0.95768 1.22963 1.03889 0.99829 0.93609 1.20907 0.91599 0.98631 0.92686 1.20065 1.00194 0.89260 1.11425 0.91981 0.85118 0.87501 0.76657 0.76983 0.89203 0.89449 0.87402 0.88202 0.88653 0.88372 0.88001 0.84455 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.17 13.67 55.48 0.76 -24.42 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.37 29.55 -169.99 -5.02 15.34 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.39 -10.82 9.43 30.88 0.29 -10.53 16 8 H 0.09 2.34 5.31 -52.49 -0.28 2.07 16 9 O -0.17 -4.90 9.76 -0.01 0.00 -4.90 16 10 C 0.16 3.97 6.65 -39.08 -0.26 3.71 16 11 C -0.23 -4.97 9.12 -39.42 -0.36 -5.33 16 12 C -0.07 -1.19 9.96 -39.41 -0.39 -1.58 16 13 C 0.00 0.08 5.94 -83.63 -0.50 -0.42 16 14 N -0.61 -7.88 5.32 -11.36 -0.06 -7.94 16 15 C 0.55 7.47 7.84 -86.91 -0.68 6.79 16 16 S -0.63 -11.74 24.81 -107.50 -2.67 -14.41 16 17 N -0.69 -6.24 5.56 -62.03 -0.34 -6.59 16 18 C 0.16 1.37 5.41 -4.04 -0.02 1.35 16 19 C -0.18 -1.04 5.85 -90.62 -0.53 -1.57 16 20 C -0.18 -0.96 10.18 -26.73 -0.27 -1.24 16 21 C -0.17 -0.90 10.25 -26.73 -0.27 -1.17 16 22 C -0.02 -0.32 7.86 -39.41 -0.31 -0.63 16 23 C -0.19 -4.17 9.99 -39.42 -0.39 -4.56 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.13 2.77 5.72 -52.48 -0.30 2.47 16 26 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 27 H 0.40 3.56 8.84 -40.82 -0.36 3.20 16 28 H 0.39 2.28 8.42 -40.82 -0.34 1.94 16 29 H 0.09 0.92 7.99 -51.93 -0.41 0.50 16 30 H 0.09 0.86 7.72 -51.93 -0.40 0.46 16 31 H 0.11 0.53 8.04 -51.93 -0.42 0.11 16 32 H 0.10 0.58 8.03 -51.93 -0.42 0.16 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.14 2.65 6.07 -43.64 -0.26 2.39 16 37 H 0.12 2.65 8.06 -52.49 -0.42 2.22 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -33.83 328.95 -10.62 -44.45 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.45 Total: 7.71 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -3.80 Total: -14.21 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.35 Total: -38.94 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: 0.00 Total: -4.90 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: -11.74 SS G_CDS: -2.67 Total: -14.41 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.83 -10.62 -44.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333143618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.468 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds