Wall clock time and date at job start Tue Mar 31 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86803 * 120.00024 * 2 1 4 4 H 1.48496 * 109.47492 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46861 * 300.00467 * 3 2 1 6 6 H 1.48500 * 109.47107 * 59.99760 * 3 2 1 7 7 C 1.38627 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99517 * 179.97438 * 7 2 1 9 9 O 1.34808 * 119.99751 * 0.02562 * 7 2 1 10 10 C 1.35788 * 116.99738 * 185.47383 * 9 7 2 11 11 C 1.38906 * 119.99780 * 6.45350 * 10 9 7 12 12 C 1.38002 * 120.00468 * 180.02562 * 11 10 9 13 13 C 1.38929 * 119.99272 * 359.97438 * 12 11 10 14 14 N 1.39966 * 119.99642 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99433 * 135.68371 * 14 13 12 16 16 S 1.71201 * 120.00161 * 3.18367 * 15 14 13 17 17 N 1.34777 * 119.99968 * 183.19006 * 15 14 13 18 18 C 1.46500 * 120.00235 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47304 * 179.97438 * 18 17 15 20 20 C 1.53000 * 117.49742 * 243.61912 * 19 18 17 21 21 C 1.52998 * 60.00347 * 252.51268 * 20 19 18 22 22 C 1.38924 * 119.99629 * 0.28088 * 13 12 11 23 23 C 1.38000 * 120.00158 * 359.44259 * 22 13 12 24 24 H 0.97002 * 120.00292 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99824 * 359.97438 * 11 10 9 26 26 H 1.07998 * 119.99916 * 179.97438 * 12 11 10 27 27 H 0.96996 * 120.00719 * 315.40758 * 14 13 12 28 28 H 0.97002 * 120.00124 * 359.97438 * 17 15 14 29 29 H 1.09004 * 109.46733 * 300.00029 * 18 17 15 30 30 H 1.09004 * 109.46871 * 59.99070 * 18 17 15 31 31 H 1.08991 * 115.55052 * 29.32473 * 19 18 17 32 32 H 1.09001 * 117.49745 * 0.02562 * 20 19 18 33 33 H 1.09001 * 117.50209 * 145.01788 * 20 19 18 34 34 H 1.08998 * 117.49552 * 252.51778 * 21 20 19 35 35 H 1.08993 * 117.50308 * 107.48892 * 21 20 19 36 36 H 1.08001 * 119.99769 * 179.72020 * 22 13 12 37 37 H 1.07995 * 120.00329 * 180.27824 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7098 1.3465 -0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2004 -0.0010 9 8 1.3348 -2.3680 -0.0016 10 6 2.0696 -3.5041 0.1134 11 6 3.4345 -3.4266 0.3593 12 6 4.1814 -4.5811 0.4756 13 6 3.5680 -5.8210 0.3472 14 7 4.3256 -6.9920 0.4646 15 6 3.8603 -8.0253 1.1943 16 16 2.3076 -7.9372 1.9100 17 7 4.6174 -9.1279 1.3606 18 6 4.1114 -10.2512 2.1532 19 6 5.1583 -11.3665 2.1836 20 6 4.7858 -12.7028 1.5381 21 6 4.8668 -12.5854 3.0614 22 6 2.2039 -5.8984 0.0959 23 6 1.4561 -4.7438 -0.0147 24 1 -0.4851 0.8400 0.0004 25 1 3.9113 -2.4626 0.4587 26 1 5.2427 -4.5207 0.6665 27 1 5.1837 -7.0615 0.0177 28 1 5.4970 -9.1779 0.9549 29 1 3.9077 -9.9157 3.1702 30 1 3.1924 -10.6280 1.7041 31 1 6.1951 -11.0403 2.1035 32 1 3.7951 -12.7871 1.0914 33 1 5.5777 -13.2559 1.0330 34 1 5.7121 -13.0611 3.5585 35 1 3.9293 -12.5926 3.6173 36 1 1.7279 -6.8622 -0.0084 37 1 0.3949 -4.8040 -0.2055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333143618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:34 Heat of formation + Delta-G solvation = 28.163161 kcal Electronic energy + Delta-G solvation = -19637.094420 eV Core-core repulsion = 16506.653571 eV Total energy + Delta-G solvation = -3130.440849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.20068 -40.15366 -38.91283 -37.54352 -35.38281 -34.14958 -31.90699 -30.01302 -28.07335 -27.12150 -25.13106 -23.56504 -23.22585 -23.06218 -21.84934 -19.96298 -19.47516 -19.22642 -18.47818 -17.11576 -16.81703 -16.50713 -16.26564 -15.91919 -15.53142 -15.27346 -15.21628 -14.93351 -14.59302 -14.29639 -13.92685 -13.47383 -13.21354 -12.98707 -12.63822 -12.49323 -12.36761 -12.33478 -12.24280 -12.06359 -11.36858 -11.36070 -11.12907 -10.82050 -10.36940 -9.91482 -9.14655 -8.83461 -8.44728 -8.20810 -6.12215 0.05536 0.62446 0.72572 0.92043 1.38042 1.44202 1.49530 1.56843 2.19895 2.51620 2.83097 2.87269 3.18466 3.53172 3.62061 3.96175 4.04773 4.05885 4.17871 4.19143 4.48234 4.54311 4.57871 4.67885 4.73439 4.82431 5.01545 5.04545 5.09016 5.21768 5.26348 5.26884 5.32456 5.49295 5.60313 5.71729 5.90992 6.04672 6.22409 6.42151 6.99601 7.80347 8.78807 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.049769 B = 0.002690 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.462990 B =10408.252123 C =10709.729914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.026 4.026 3 Si 1.021 2.979 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.410 4.410 8 H 0.108 0.892 9 O -0.228 6.228 10 C 0.128 3.872 11 C -0.236 4.236 12 C -0.054 4.054 13 C 0.035 3.965 14 N -0.593 5.593 15 C 0.578 3.422 16 S -0.730 6.730 17 N -0.653 5.653 18 C 0.158 3.842 19 C -0.173 4.173 20 C -0.175 4.175 21 C -0.167 4.167 22 C -0.016 4.016 23 C -0.203 4.203 24 H 0.272 0.728 25 H 0.132 0.868 26 H 0.157 0.843 27 H 0.426 0.574 28 H 0.420 0.580 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.141 0.859 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.762 -21.917 0.997 28.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.224 4.224 3 Si 0.840 3.160 4 H -0.169 1.169 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.486 4.486 8 H 0.125 0.875 9 O -0.134 6.134 10 C 0.077 3.923 11 C -0.257 4.257 12 C -0.074 4.074 13 C -0.058 4.058 14 N -0.219 5.219 15 C 0.215 3.785 16 S -0.602 6.602 17 N -0.282 5.282 18 C 0.035 3.965 19 C -0.192 4.192 20 C -0.212 4.212 21 C -0.205 4.205 22 C -0.038 4.038 23 C -0.224 4.224 24 H 0.081 0.919 25 H 0.149 0.851 26 H 0.174 0.826 27 H 0.268 0.732 28 H 0.260 0.740 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.147 0.853 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.113 0.887 36 H 0.158 0.842 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 17.310 -21.804 1.529 27.881 hybrid contribution 0.987 0.822 -0.554 1.399 sum 18.297 -20.982 0.975 27.856 Atomic orbital electron populations 1.70218 1.08178 1.28752 1.48784 1.26659 0.96848 1.02956 0.95894 0.84492 0.78446 0.74659 0.78365 1.16938 1.19480 1.19678 1.21913 0.92694 0.81226 1.52780 0.87486 1.83980 1.36092 1.12704 1.80670 1.19947 0.91787 0.87540 0.93069 1.21027 0.93154 0.99725 1.11761 1.20780 1.00527 0.89195 0.96893 1.16935 0.91246 0.84303 1.13321 1.41688 1.22428 1.11233 1.46536 1.21693 0.92007 0.82533 0.82309 1.93829 1.09089 1.91370 1.65932 1.44799 1.18965 1.13548 1.50911 1.21258 0.96507 0.83167 0.95583 1.22396 0.99715 0.88925 1.08125 1.23185 1.03545 0.98638 0.95828 1.23055 1.04212 0.99389 0.93801 1.21003 0.92834 0.97622 0.92327 1.20163 1.00179 0.89841 1.12247 0.91881 0.85069 0.82561 0.73203 0.73969 0.90603 0.90685 0.85285 0.88957 0.87189 0.86955 0.88692 0.84154 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.19 13.67 21.61 0.30 -56.89 16 2 C -0.03 -1.49 5.49 84.82 0.47 -1.02 16 3 Si 1.02 42.55 29.55 68.60 2.03 44.57 16 4 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.41 -23.67 9.43 67.91 0.64 -23.03 16 8 H 0.11 5.54 5.31 -2.91 -0.02 5.53 16 9 O -0.23 -13.89 9.76 -22.94 -0.22 -14.11 16 10 C 0.13 6.46 6.65 22.59 0.15 6.61 16 11 C -0.24 -9.92 9.12 22.37 0.20 -9.72 16 12 C -0.05 -1.72 9.96 22.38 0.22 -1.50 16 13 C 0.04 1.12 5.94 38.17 0.23 1.35 16 14 N -0.59 -12.66 5.32 -189.86 -1.01 -13.67 16 15 C 0.58 13.76 7.84 179.05 1.40 15.16 16 16 S -0.73 -26.91 24.81 -56.49 -1.40 -28.31 16 17 N -0.65 -9.08 5.56 -350.16 -1.95 -11.03 16 18 C 0.16 2.32 5.41 86.38 0.47 2.79 16 19 C -0.17 -1.41 5.85 -10.79 -0.06 -1.47 16 20 C -0.18 -1.36 10.18 30.59 0.31 -1.05 16 21 C -0.17 -1.35 10.25 30.60 0.31 -1.04 16 22 C -0.02 -0.61 7.86 22.38 0.18 -0.43 16 23 C -0.20 -9.40 9.99 22.37 0.22 -9.17 16 24 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 25 H 0.13 5.45 5.72 -2.91 -0.02 5.44 16 26 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 27 H 0.43 4.90 8.84 -92.71 -0.82 4.08 16 28 H 0.42 2.36 8.42 -92.71 -0.78 1.58 16 29 H 0.08 1.43 7.99 -2.38 -0.02 1.41 16 30 H 0.07 1.38 7.72 -2.39 -0.02 1.36 16 31 H 0.13 0.57 8.04 -2.39 -0.02 0.56 16 32 H 0.09 0.88 8.03 -2.39 -0.02 0.86 16 33 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.14 5.43 6.07 -8.54 -0.05 5.38 16 37 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -81.33 328.95 1.97 -79.36 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -0.51 Total: 22.61 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 4.74 Total: -22.53 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -2.66 Total: -81.59 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.22 Total: -14.11 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: -26.91 SS G_CDS: -1.40 Total: -28.31 kcal Total: -81.33 1.97 -79.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333143618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.527 kcal (2) G-P(sol) polarization free energy of solvation -81.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds