Wall clock time and date at job start Tue Mar 31 2020 06:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31312 * 1 3 3 Si 1.86794 * 119.99817 * 2 1 4 4 H 1.48507 * 109.46941 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47355 * 300.00465 * 3 2 1 6 6 H 1.48504 * 109.47213 * 60.00449 * 3 2 1 7 7 C 1.39141 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00116 * 164.88514 * 7 2 1 9 9 N 1.36660 * 120.00039 * 344.88383 * 7 2 1 10 10 C 1.34784 * 120.00054 * 149.45609 * 9 7 2 11 11 O 1.21796 * 120.00089 * 184.94799 * 10 9 7 12 12 C 1.41739 * 119.99858 * 4.94353 * 10 9 7 13 13 C 1.35439 * 120.00024 * 184.36381 * 12 10 9 14 14 C 1.46299 * 119.99820 * 180.02562 * 13 12 10 15 15 N 1.30883 * 125.54939 * 179.97438 * 14 13 12 16 16 C 1.30826 * 115.79557 * 179.97438 * 15 14 13 17 17 C 1.34163 * 115.80958 * 0.02562 * 16 15 14 18 18 S 1.71057 * 109.16491 * 359.72736 * 17 16 15 19 19 C 1.46495 * 119.99993 * 329.45623 * 9 7 2 20 20 C 1.55238 * 110.58359 * 234.88062 * 19 9 7 21 21 C 1.54879 * 102.59200 * 203.34129 * 20 19 9 22 22 C 1.54265 * 104.31527 * 37.92993 * 21 20 19 23 23 C 1.53879 * 106.59881 * 336.32765 * 22 21 20 24 24 H 0.97000 * 119.99886 * 359.97438 * 1 2 3 25 25 H 1.08006 * 120.00263 * 4.36410 * 12 10 9 26 26 H 1.07993 * 119.99888 * 359.97438 * 13 12 10 27 27 H 1.08005 * 122.09217 * 180.02562 * 16 15 14 28 28 H 1.08003 * 125.41550 * 180.02562 * 17 16 15 29 29 H 1.08998 * 110.43864 * 357.46869 * 19 9 7 30 30 H 1.08997 * 110.89858 * 85.04614 * 20 19 9 31 31 H 1.09006 * 110.76383 * 321.57343 * 20 19 9 32 32 H 1.09003 * 110.49040 * 279.18780 * 21 20 19 33 33 H 1.09004 * 110.49475 * 156.67744 * 21 20 19 34 34 H 1.09003 * 110.02970 * 95.60976 * 22 21 20 35 35 H 1.08998 * 110.03637 * 216.99304 * 22 21 20 36 36 H 1.09002 * 110.03204 * 119.28074 * 23 22 21 37 37 H 1.09000 * 110.03217 * 240.66160 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3131 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7071 1.3463 -0.0006 5 1 1.8882 2.3965 -1.2124 6 1 1.8884 2.3964 1.2126 7 6 2.0088 -1.2050 -0.0005 8 1 3.0607 -1.2211 -0.2444 9 7 1.3610 -2.3682 0.3076 10 6 1.7631 -3.5302 -0.2445 11 8 1.1315 -4.5516 -0.0415 12 6 2.9209 -3.5634 -1.0614 13 6 3.2752 -4.7109 -1.6876 14 6 4.4706 -4.7453 -2.5303 15 7 4.9119 -5.7906 -3.1826 16 6 6.0027 -5.6070 -3.8812 17 6 6.5243 -4.3717 -3.8359 18 16 5.5459 -3.3852 -2.8382 19 6 0.2295 -2.3521 1.2379 20 6 0.4684 -3.3473 2.4051 21 6 -0.9706 -3.6474 2.8929 22 6 -1.8085 -3.7013 1.5988 23 6 -1.0455 -2.8777 0.5464 24 1 -0.4850 0.8401 0.0004 25 1 3.5206 -2.6736 -1.1846 26 1 2.6758 -5.6007 -1.5641 27 1 6.4549 -6.4001 -4.4583 28 1 7.4171 -4.0500 -4.3515 29 1 0.0673 -1.3453 1.6226 30 1 1.0560 -2.8835 3.1974 31 1 0.9518 -4.2558 2.0456 32 1 -1.3266 -2.8498 3.5449 33 1 -1.0060 -4.6061 3.4104 34 1 -1.9109 -4.7332 1.2630 35 1 -2.7926 -3.2662 1.7727 36 1 -0.7776 -3.5100 -0.3001 37 1 -1.6594 -2.0427 0.2088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345717288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:28 Heat of formation + Delta-G solvation = 30.852544 kcal Electronic energy + Delta-G solvation = -20997.617924 eV Core-core repulsion = 17867.293696 eV Total energy + Delta-G solvation = -3130.324228 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.45315 -39.20475 -36.40731 -34.49589 -33.20590 -31.59789 -29.59535 -27.75076 -27.34059 -25.67363 -24.62742 -22.33097 -20.08724 -19.66229 -19.48885 -18.86391 -17.71121 -16.88144 -16.05582 -15.36166 -14.85949 -14.65338 -14.43328 -14.32744 -13.70672 -13.56515 -13.40532 -12.88344 -12.52879 -12.39642 -11.96804 -11.62261 -11.41558 -11.27987 -11.15083 -10.78784 -10.47593 -10.45207 -10.31165 -10.20296 -10.07109 -9.82429 -9.59699 -9.56461 -9.27132 -9.02049 -8.38884 -7.99963 -7.63878 -6.57175 -4.11666 0.39586 1.48178 1.93221 2.05219 3.01372 3.11802 3.14493 3.21434 3.92803 4.26927 4.35474 4.84666 4.93842 5.19840 5.40155 5.52657 5.54367 5.60814 5.71427 5.74737 6.17125 6.24472 6.36482 6.38356 6.48856 6.49377 6.60850 6.68303 6.73569 6.77081 6.92540 6.99368 7.20581 7.20929 7.41031 7.49767 7.72282 7.85278 8.26817 8.89023 9.37054 9.81732 10.44381 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014424 B = 0.005474 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.746704 B = 5113.732821 C = 6732.045474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.042 3.958 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.338 4.338 8 H 0.098 0.902 9 N -0.408 5.408 10 C 0.473 3.527 11 O -0.600 6.600 12 C -0.108 4.108 13 C -0.069 4.069 14 C 0.100 3.900 15 N -0.468 5.468 16 C 0.038 3.962 17 C -0.308 4.308 18 S 0.149 5.851 19 C 0.163 3.837 20 C -0.145 4.145 21 C -0.115 4.115 22 C -0.116 4.116 23 C -0.115 4.115 24 H 0.273 0.727 25 H 0.124 0.876 26 H 0.152 0.848 27 H 0.168 0.832 28 H 0.173 0.827 29 H 0.107 0.893 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.543 -1.883 -1.774 7.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.166 4.166 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.466 4.466 8 H 0.115 0.885 9 N -0.122 5.122 10 C 0.265 3.735 11 O -0.489 6.489 12 C -0.135 4.135 13 C -0.094 4.094 14 C -0.171 4.171 15 N -0.182 5.182 16 C -0.118 4.118 17 C -0.448 4.448 18 S 0.406 5.594 19 C 0.059 3.941 20 C -0.184 4.184 21 C -0.153 4.153 22 C -0.154 4.154 23 C -0.153 4.153 24 H 0.084 0.916 25 H 0.142 0.858 26 H 0.169 0.831 27 H 0.185 0.815 28 H 0.191 0.809 29 H 0.125 0.875 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.835 -1.637 -1.339 6.206 hybrid contribution 1.021 0.374 -0.739 1.315 sum 6.856 -1.264 -2.078 7.274 Atomic orbital electron populations 1.69922 1.06168 1.28111 1.43896 1.25424 0.95366 1.00014 0.95754 0.85993 0.80015 0.81348 0.78209 1.18923 1.20442 1.20286 1.19685 0.94571 0.84173 1.48209 0.88493 1.43620 1.27609 1.05934 1.35050 1.16766 0.87533 0.84978 0.84192 1.90673 1.58898 1.34042 1.65285 1.22506 0.97585 0.97054 0.96402 1.21245 0.92411 1.00133 0.95647 1.26442 0.99721 0.90336 1.00562 1.67089 1.12729 1.28773 1.09643 1.21656 0.93021 0.96673 1.00433 1.26418 1.08629 0.99079 1.10682 1.84065 1.18429 1.15964 1.40955 1.21810 0.85284 0.99331 0.87658 1.23018 0.96205 1.01443 0.97702 1.22177 0.96081 0.99938 0.97110 1.22023 0.97727 0.99923 0.95718 1.22207 0.96213 0.98666 0.98246 0.91636 0.85786 0.83090 0.81457 0.80941 0.87512 0.93111 0.89758 0.92646 0.92808 0.92674 0.93291 0.91280 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.56 10.60 55.51 0.59 -19.97 16 2 C 0.04 0.99 4.94 -17.44 -0.09 0.90 16 3 Si 0.92 18.08 29.58 -169.99 -5.03 13.05 16 4 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.34 -7.99 8.84 -15.06 -0.13 -8.12 16 8 H 0.10 2.15 6.20 -52.49 -0.33 1.83 16 9 N -0.41 -9.72 2.62 -108.95 -0.29 -10.01 16 10 C 0.47 11.03 6.53 -14.92 -0.10 10.93 16 11 O -0.60 -14.90 12.49 5.10 0.06 -14.83 16 12 C -0.11 -2.18 8.70 -39.24 -0.34 -2.52 16 13 C -0.07 -1.29 9.70 -37.34 -0.36 -1.65 16 14 C 0.10 1.70 7.40 -14.72 -0.11 1.59 16 15 N -0.47 -7.84 10.67 -11.71 -0.12 -7.96 16 16 C 0.04 0.52 11.24 -19.42 -0.22 0.30 16 17 C -0.31 -3.75 11.08 29.30 0.32 -3.43 16 18 S 0.15 2.10 22.05 -107.50 -2.37 -0.27 16 19 C 0.16 3.72 2.24 -66.08 -0.15 3.57 16 20 C -0.15 -2.97 6.25 -24.56 -0.15 -3.13 16 21 C -0.12 -2.04 6.82 -25.08 -0.17 -2.21 16 22 C -0.12 -2.16 6.80 -25.61 -0.17 -2.34 16 23 C -0.12 -2.55 5.88 -25.61 -0.15 -2.70 16 24 H 0.27 6.26 8.31 -40.82 -0.34 5.93 16 25 H 0.12 2.35 5.26 -52.48 -0.28 2.07 16 26 H 0.15 2.95 7.46 -52.49 -0.39 2.56 16 27 H 0.17 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.17 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.11 2.59 5.95 -51.93 -0.31 2.28 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.88 5.93 -51.93 -0.31 1.57 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.69 6.18 -51.93 -0.32 1.37 16 37 H 0.06 1.49 7.76 -51.93 -0.40 1.08 16 LS Contribution 315.64 15.07 4.76 4.76 Total: -1.00 -26.71 315.64 -8.65 -35.36 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.43 Total: 8.70 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -1.82 Total: -8.81 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.18 Total: -37.94 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.06 Total: -14.83 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.37 Total: -0.27 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.71 -8.65 -35.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345717288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.208 kcal (2) G-P(sol) polarization free energy of solvation -26.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds