Wall clock time and date at job start Tue Mar 31 2020 06:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31312 * 1 3 3 Si 1.86794 * 119.99817 * 2 1 4 4 H 1.48507 * 109.46941 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47355 * 300.00465 * 3 2 1 6 6 H 1.48504 * 109.47213 * 60.00449 * 3 2 1 7 7 C 1.39141 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00116 * 164.88514 * 7 2 1 9 9 N 1.36660 * 120.00039 * 344.88383 * 7 2 1 10 10 C 1.34784 * 120.00054 * 149.45609 * 9 7 2 11 11 O 1.21796 * 120.00089 * 184.94799 * 10 9 7 12 12 C 1.41739 * 119.99858 * 4.94353 * 10 9 7 13 13 C 1.35439 * 120.00024 * 184.36381 * 12 10 9 14 14 C 1.46299 * 119.99820 * 180.02562 * 13 12 10 15 15 N 1.30883 * 125.54939 * 179.97438 * 14 13 12 16 16 C 1.30826 * 115.79557 * 179.97438 * 15 14 13 17 17 C 1.34163 * 115.80958 * 0.02562 * 16 15 14 18 18 S 1.71057 * 109.16491 * 359.72736 * 17 16 15 19 19 C 1.46495 * 119.99993 * 329.45623 * 9 7 2 20 20 C 1.55238 * 110.58359 * 234.88062 * 19 9 7 21 21 C 1.54879 * 102.59200 * 203.34129 * 20 19 9 22 22 C 1.54265 * 104.31527 * 37.92993 * 21 20 19 23 23 C 1.53879 * 106.59881 * 336.32765 * 22 21 20 24 24 H 0.97000 * 119.99886 * 359.97438 * 1 2 3 25 25 H 1.08006 * 120.00263 * 4.36410 * 12 10 9 26 26 H 1.07993 * 119.99888 * 359.97438 * 13 12 10 27 27 H 1.08005 * 122.09217 * 180.02562 * 16 15 14 28 28 H 1.08003 * 125.41550 * 180.02562 * 17 16 15 29 29 H 1.08998 * 110.43864 * 357.46869 * 19 9 7 30 30 H 1.08997 * 110.89858 * 85.04614 * 20 19 9 31 31 H 1.09006 * 110.76383 * 321.57343 * 20 19 9 32 32 H 1.09003 * 110.49040 * 279.18780 * 21 20 19 33 33 H 1.09004 * 110.49475 * 156.67744 * 21 20 19 34 34 H 1.09003 * 110.02970 * 95.60976 * 22 21 20 35 35 H 1.08998 * 110.03637 * 216.99304 * 22 21 20 36 36 H 1.09002 * 110.03204 * 119.28074 * 23 22 21 37 37 H 1.09000 * 110.03217 * 240.66160 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3131 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7071 1.3463 -0.0006 5 1 1.8882 2.3965 -1.2124 6 1 1.8884 2.3964 1.2126 7 6 2.0088 -1.2050 -0.0005 8 1 3.0607 -1.2211 -0.2444 9 7 1.3610 -2.3682 0.3076 10 6 1.7631 -3.5302 -0.2445 11 8 1.1315 -4.5516 -0.0415 12 6 2.9209 -3.5634 -1.0614 13 6 3.2752 -4.7109 -1.6876 14 6 4.4706 -4.7453 -2.5303 15 7 4.9119 -5.7906 -3.1826 16 6 6.0027 -5.6070 -3.8812 17 6 6.5243 -4.3717 -3.8359 18 16 5.5459 -3.3852 -2.8382 19 6 0.2295 -2.3521 1.2379 20 6 0.4684 -3.3473 2.4051 21 6 -0.9706 -3.6474 2.8929 22 6 -1.8085 -3.7013 1.5988 23 6 -1.0455 -2.8777 0.5464 24 1 -0.4850 0.8401 0.0004 25 1 3.5206 -2.6736 -1.1846 26 1 2.6758 -5.6007 -1.5641 27 1 6.4549 -6.4001 -4.4583 28 1 7.4171 -4.0500 -4.3515 29 1 0.0673 -1.3453 1.6226 30 1 1.0560 -2.8835 3.1974 31 1 0.9518 -4.2558 2.0456 32 1 -1.3266 -2.8498 3.5449 33 1 -1.0060 -4.6061 3.4104 34 1 -1.9109 -4.7332 1.2630 35 1 -2.7926 -3.2662 1.7727 36 1 -0.7776 -3.5100 -0.3001 37 1 -1.6594 -2.0427 0.2088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345717288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:28 Heat of formation + Delta-G solvation = 16.817521 kcal Electronic energy + Delta-G solvation = -20998.226528 eV Core-core repulsion = 17867.293696 eV Total energy + Delta-G solvation = -3130.932833 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.10661 -40.47618 -38.07472 -36.22446 -34.70342 -33.37304 -30.83718 -29.40364 -28.91473 -27.20244 -26.19490 -23.78690 -21.62894 -21.08354 -20.95502 -20.57983 -19.08317 -18.41470 -17.66264 -16.75410 -16.46760 -16.27978 -15.93878 -15.63089 -15.29422 -15.14916 -14.80100 -14.25034 -14.16874 -13.99590 -13.57209 -13.18387 -12.97943 -12.87099 -12.45964 -12.33839 -12.15309 -11.98669 -11.90257 -11.81508 -11.52721 -11.41201 -11.12900 -10.81899 -10.78020 -10.48132 -10.21808 -9.52149 -9.21195 -8.31187 -5.95022 -0.88022 0.30387 0.68479 0.82337 1.46994 1.50979 1.62540 1.96415 2.29888 2.62419 2.86909 3.16787 3.41475 3.96500 4.01782 4.09553 4.16768 4.23193 4.35582 4.47869 4.62326 4.74356 4.84658 4.85780 4.91787 4.95820 5.00647 5.11646 5.19461 5.26925 5.29132 5.40923 5.44899 5.55702 5.63879 5.72845 5.97369 6.49396 6.69114 7.11304 7.60474 8.04158 8.71487 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014424 B = 0.005474 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.746704 B = 5113.732821 C = 6732.045474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.003 3.997 3 Si 0.984 3.016 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.360 4.360 8 H 0.106 0.894 9 N -0.424 5.424 10 C 0.468 3.532 11 O -0.625 6.625 12 C -0.140 4.140 13 C -0.034 4.034 14 C 0.047 3.953 15 N -0.480 5.480 16 C 0.016 3.984 17 C -0.274 4.274 18 S 0.183 5.817 19 C 0.159 3.841 20 C -0.142 4.142 21 C -0.107 4.107 22 C -0.111 4.111 23 C -0.109 4.109 24 H 0.273 0.727 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.201 0.799 28 H 0.215 0.785 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.867 -1.614 -2.406 9.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.201 4.201 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.488 4.488 8 H 0.123 0.877 9 N -0.138 5.138 10 C 0.261 3.739 11 O -0.516 6.516 12 C -0.166 4.166 13 C -0.058 4.058 14 C -0.222 4.222 15 N -0.195 5.195 16 C -0.139 4.139 17 C -0.414 4.414 18 S 0.439 5.561 19 C 0.055 3.945 20 C -0.180 4.180 21 C -0.144 4.144 22 C -0.149 4.149 23 C -0.147 4.147 24 H 0.083 0.917 25 H 0.153 0.847 26 H 0.152 0.848 27 H 0.218 0.782 28 H 0.232 0.768 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.157 -1.376 -1.962 8.501 hybrid contribution 0.514 0.131 -0.763 0.929 sum 8.671 -1.245 -2.725 9.174 Atomic orbital electron populations 1.70033 1.07469 1.28710 1.45208 1.26215 0.96035 1.02731 0.95144 0.85010 0.79342 0.77225 0.77723 1.17683 1.20682 1.20329 1.20001 0.95143 0.84470 1.49204 0.87677 1.43753 1.28111 1.06168 1.35801 1.17244 0.88082 0.84544 0.84020 1.90629 1.59897 1.34805 1.66249 1.22249 0.97818 0.98194 0.98371 1.21175 0.92241 0.98681 0.93739 1.26106 1.00863 0.92367 1.02903 1.67066 1.13788 1.29388 1.09262 1.22174 0.92490 0.98356 1.00869 1.27014 1.08478 0.97878 1.08015 1.84024 1.17249 1.14572 1.40278 1.21813 0.85429 0.98903 0.88388 1.22950 0.98159 0.99774 0.97105 1.22175 0.93651 1.01797 0.96814 1.21997 0.98543 0.99283 0.95101 1.22090 0.96478 0.97905 0.98258 0.91674 0.84724 0.84789 0.78234 0.76782 0.89183 0.92223 0.91972 0.90742 0.90651 0.92776 0.90970 0.94514 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.11 10.60 21.70 0.23 -43.88 16 2 C 0.00 0.16 4.94 84.99 0.42 0.58 16 3 Si 0.98 37.20 29.58 68.60 2.03 39.23 16 4 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 5 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.28 -10.43 7.11 99.48 0.71 -9.73 16 7 C -0.36 -17.51 8.84 84.16 0.74 -16.77 16 8 H 0.11 4.75 6.20 -2.91 -0.02 4.73 16 9 N -0.42 -21.10 2.62 -616.78 -1.61 -22.71 16 10 C 0.47 22.92 6.53 85.11 0.56 23.47 16 11 O -0.62 -32.74 12.49 -4.66 -0.06 -32.79 16 12 C -0.14 -5.84 8.70 22.49 0.20 -5.64 16 13 C -0.03 -1.29 9.70 23.72 0.23 -1.06 16 14 C 0.05 1.57 7.40 86.93 0.64 2.21 16 15 N -0.48 -15.30 10.67 -190.96 -2.04 -17.34 16 16 C 0.02 0.38 11.24 83.91 0.94 1.32 16 17 C -0.27 -5.44 11.08 66.89 0.74 -4.70 16 18 S 0.18 4.68 22.05 -56.49 -1.25 3.43 16 19 C 0.16 7.51 2.24 46.19 0.10 7.61 16 20 C -0.14 -5.89 6.25 32.00 0.20 -5.69 16 21 C -0.11 -3.67 6.82 31.66 0.22 -3.45 16 22 C -0.11 -4.15 6.80 31.32 0.21 -3.94 16 23 C -0.11 -5.03 5.88 31.32 0.18 -4.85 16 24 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 25 H 0.14 5.21 5.26 -2.91 -0.02 5.20 16 26 H 0.13 5.51 7.46 -2.91 -0.02 5.49 16 27 H 0.20 3.26 8.06 -2.91 -0.02 3.24 16 28 H 0.22 2.47 8.06 -2.91 -0.02 2.44 16 29 H 0.09 4.54 5.95 -2.39 -0.01 4.52 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.06 2.86 5.93 -2.38 -0.01 2.85 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.04 1.90 6.18 -2.39 -0.01 1.88 16 37 H 0.05 2.39 7.76 -2.39 -0.02 2.37 16 Total: -1.00 -60.67 315.64 3.78 -56.88 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 1.09 Total: 28.08 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 5.39 Total: -10.90 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -3.42 Total: -83.94 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.06 Total: -32.79 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -1.25 Total: 3.43 kcal Total: -60.67 3.78 -56.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345717288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.702 kcal (2) G-P(sol) polarization free energy of solvation -60.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds