Wall clock time and date at job start Tue Mar 31 2020 06:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31315 * 1 3 3 Si 1.86797 * 119.99780 * 2 1 4 4 H 1.48500 * 109.47176 * 275.78232 * 3 2 1 5 5 H 1.48498 * 109.47093 * 35.78554 * 3 2 1 6 6 H 1.48499 * 109.46825 * 155.78292 * 3 2 1 7 7 C 1.39147 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00309 * 355.03613 * 7 2 1 9 9 N 1.36665 * 119.99658 * 175.02936 * 7 2 1 10 10 C 1.34777 * 119.99928 * 308.20312 * 9 7 2 11 11 O 1.21792 * 120.00143 * 4.84118 * 10 9 7 12 12 C 1.41742 * 119.99806 * 184.84714 * 10 9 7 13 13 C 1.35435 * 119.99921 * 182.89186 * 12 10 9 14 14 C 1.46293 * 120.00246 * 10.44072 * 13 12 10 15 15 N 1.30882 * 125.55583 * 244.05093 * 14 13 12 16 16 C 1.30818 * 115.79810 * 179.97438 * 15 14 13 17 17 C 1.34166 * 115.81249 * 0.02562 * 16 15 14 18 18 S 1.71063 * 109.16230 * 359.72721 * 17 16 15 19 19 C 1.46498 * 119.99621 * 128.20175 * 9 7 2 20 20 C 1.55236 * 110.58195 * 52.01513 * 19 9 7 21 21 C 1.54887 * 102.58830 * 203.33355 * 20 19 9 22 22 C 1.54270 * 104.30946 * 37.93371 * 21 20 19 23 23 C 1.53872 * 106.60181 * 336.32181 * 22 21 20 24 24 H 0.96996 * 120.00155 * 359.97438 * 1 2 3 25 25 H 1.07996 * 119.99836 * 2.88947 * 12 10 9 26 26 H 1.08000 * 119.99877 * 190.44324 * 13 12 10 27 27 H 1.08009 * 122.09618 * 180.02562 * 16 15 14 28 28 H 1.08001 * 125.42038 * 180.02562 * 17 16 15 29 29 H 1.08997 * 110.43019 * 174.59978 * 19 9 7 30 30 H 1.09003 * 110.89719 * 85.04428 * 20 19 9 31 31 H 1.08998 * 110.76571 * 321.57191 * 20 19 9 32 32 H 1.08995 * 110.49184 * 279.19161 * 21 20 19 33 33 H 1.08996 * 110.48956 * 156.67372 * 21 20 19 34 34 H 1.09007 * 110.03072 * 95.60501 * 22 21 20 35 35 H 1.09003 * 110.03727 * 216.98641 * 22 21 20 36 36 H 1.09000 * 110.03384 * 119.28415 * 23 22 21 37 37 H 1.09002 * 110.03551 * 240.66939 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 2.3724 2.1170 -1.3929 5 1 1.5110 2.6143 0.8187 6 1 3.6004 1.4080 0.5743 7 6 2.0088 -1.2051 -0.0005 8 1 1.4719 -2.1386 0.0800 9 7 3.3716 -1.2072 -0.1031 10 6 3.9736 -0.5264 -1.0984 11 8 3.3105 0.1619 -1.8533 12 6 5.3784 -0.6115 -1.2666 13 6 5.9905 0.1180 -2.2296 14 6 5.2487 1.1586 -2.9416 15 7 4.9731 1.1566 -4.2211 16 6 4.2959 2.1865 -4.6592 17 6 3.9741 3.1084 -3.7391 18 16 4.5747 2.6144 -2.2154 19 6 4.1781 -1.9495 0.8689 20 6 3.6812 -3.4157 0.9839 21 6 4.1794 -3.8316 2.3903 22 6 3.9847 -2.5677 3.2530 23 6 3.9838 -1.3710 2.2857 24 1 -0.4850 0.8400 0.0004 25 1 5.9606 -1.2582 -0.6269 26 1 7.0264 -0.0684 -2.4718 27 1 4.0134 2.2884 -5.6967 28 1 3.4197 4.0155 -3.9291 29 1 5.2309 -1.9248 0.5878 30 1 4.1329 -4.0409 0.2136 31 1 2.5935 -3.4605 0.9304 32 1 5.2324 -4.1108 2.3549 33 1 3.5803 -4.6549 2.7792 34 1 3.0334 -2.6201 3.7828 35 1 4.8039 -2.4720 3.9657 36 1 3.0323 -0.8427 2.3461 37 1 4.8026 -0.6938 2.5288 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345717289.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:30 Heat of formation + Delta-G solvation = 52.859487 kcal Electronic energy + Delta-G solvation = -21909.121745 eV Core-core repulsion = 18779.751809 eV Total energy + Delta-G solvation = -3129.369936 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.71348 -38.78535 -37.23790 -34.05994 -33.06677 -31.91384 -29.28382 -28.24066 -27.18621 -26.20925 -24.31420 -21.99817 -20.35326 -20.14078 -19.47470 -18.76732 -17.79944 -16.65363 -16.39843 -15.48956 -15.27303 -14.83815 -14.32414 -14.04841 -13.68695 -13.63292 -13.33228 -12.96592 -12.83700 -12.54155 -12.17104 -11.95781 -11.58293 -11.24614 -11.02554 -10.84193 -10.72150 -10.60351 -10.46781 -10.10812 -9.94551 -9.88856 -9.44012 -9.20714 -8.99613 -8.71107 -8.35240 -7.55286 -7.46553 -6.22060 -4.10265 0.91446 1.61177 2.17453 2.40106 3.37929 3.43170 3.47551 3.63594 4.21045 4.41838 4.55880 4.70422 5.02271 5.08313 5.15167 5.30556 5.41449 5.53944 5.57890 5.67121 5.87807 5.92101 5.99249 5.99709 6.02931 6.05963 6.27324 6.28069 6.38404 6.41140 6.48446 6.68363 6.74334 6.80830 6.94346 7.77040 8.02521 8.25465 8.69967 8.85516 9.32428 9.73348 10.79237 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.007051 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.818572 B = 3970.127921 C = 4703.907311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.085 3.915 3 Si 0.911 3.089 4 H -0.231 1.231 5 H -0.320 1.320 6 H -0.280 1.280 7 C -0.327 4.327 8 H 0.096 0.904 9 N -0.443 5.443 10 C 0.464 3.536 11 O -0.540 6.540 12 C -0.157 4.157 13 C -0.042 4.042 14 C 0.107 3.893 15 N -0.461 5.461 16 C 0.034 3.966 17 C -0.305 4.305 18 S 0.174 5.826 19 C 0.122 3.878 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.133 4.133 24 H 0.273 0.727 25 H 0.136 0.864 26 H 0.146 0.854 27 H 0.162 0.838 28 H 0.166 0.834 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.332 0.282 1.870 12.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.124 4.124 3 Si 0.746 3.254 4 H -0.158 1.158 5 H -0.252 1.252 6 H -0.206 1.206 7 C -0.454 4.454 8 H 0.114 0.886 9 N -0.162 5.162 10 C 0.258 3.742 11 O -0.425 6.425 12 C -0.182 4.182 13 C -0.066 4.066 14 C -0.165 4.165 15 N -0.176 5.176 16 C -0.123 4.123 17 C -0.446 4.446 18 S 0.433 5.567 19 C 0.017 3.983 20 C -0.167 4.167 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.172 4.172 24 H 0.082 0.918 25 H 0.154 0.846 26 H 0.163 0.837 27 H 0.179 0.821 28 H 0.184 0.816 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.921 0.719 2.192 12.142 hybrid contribution -0.216 0.806 -0.797 1.154 sum 11.705 1.525 1.394 11.886 Atomic orbital electron populations 1.69636 1.06881 1.28276 1.45666 1.25561 0.95036 0.99780 0.91987 0.86293 0.78584 0.81564 0.78983 1.15762 1.25151 1.20616 1.18748 0.78649 0.94773 1.53200 0.88618 1.43652 1.06682 1.44252 1.21623 1.17353 0.88021 0.86188 0.82685 1.90628 1.65746 1.41060 1.45109 1.22785 0.96329 1.00275 0.98853 1.21306 0.98527 0.92236 0.94567 1.25689 1.00542 0.98777 0.91482 1.67045 1.15852 1.23447 1.11276 1.21384 1.00047 0.89833 1.01014 1.26188 1.13356 1.07712 0.97298 1.83812 1.45467 1.17278 1.10095 1.22225 0.94464 0.92109 0.89470 1.22829 1.03014 0.95189 0.95666 1.22285 1.00274 0.97427 0.95960 1.22042 1.01148 0.94775 0.97614 1.22452 1.03120 0.97539 0.94073 0.91761 0.84612 0.83675 0.82073 0.81631 0.90305 0.92180 0.89556 0.92238 0.92061 0.91919 0.92617 0.89688 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.09 13.95 55.51 0.77 -25.31 16 2 C 0.09 2.44 5.19 -17.44 -0.09 2.35 16 3 Si 0.91 23.63 22.42 -169.99 -3.81 19.82 16 4 H -0.23 -6.03 4.75 56.54 0.27 -5.76 16 5 H -0.32 -8.40 7.11 56.52 0.40 -8.00 16 6 H -0.28 -6.94 6.76 56.52 0.38 -6.56 16 7 C -0.33 -8.80 8.06 -15.06 -0.12 -8.92 16 8 H 0.10 2.73 6.79 -52.49 -0.36 2.38 16 9 N -0.44 -10.11 2.12 -108.95 -0.23 -10.34 16 10 C 0.46 10.64 5.41 -14.92 -0.08 10.56 16 11 O -0.54 -14.19 8.55 5.11 0.04 -14.14 16 12 C -0.16 -2.78 9.23 -39.24 -0.36 -3.14 16 13 C -0.04 -0.70 10.23 -37.35 -0.38 -1.08 16 14 C 0.11 2.11 4.96 -14.72 -0.07 2.04 16 15 N -0.46 -9.37 10.67 -11.71 -0.12 -9.50 16 16 C 0.03 0.63 11.24 -19.42 -0.22 0.41 16 17 C -0.30 -5.45 11.08 29.30 0.32 -5.13 16 18 S 0.17 3.38 17.75 -107.50 -1.91 1.47 16 19 C 0.12 2.16 3.14 -66.08 -0.21 1.95 16 20 C -0.13 -2.08 6.41 -24.55 -0.16 -2.24 16 21 C -0.12 -1.58 6.82 -25.07 -0.17 -1.76 16 22 C -0.12 -1.63 6.80 -25.61 -0.17 -1.81 16 23 C -0.13 -2.27 6.43 -25.61 -0.16 -2.44 16 24 H 0.27 7.77 8.31 -40.82 -0.34 7.43 16 25 H 0.14 1.87 5.72 -52.49 -0.30 1.57 16 26 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 27 H 0.16 2.43 8.06 -52.48 -0.42 2.01 16 28 H 0.17 2.46 8.06 -52.49 -0.42 2.03 16 29 H 0.08 1.18 5.27 -51.93 -0.27 0.91 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.64 6.37 -51.93 -0.33 1.30 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.75 7.24 -51.93 -0.38 1.37 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 301.80 15.07 4.55 4.55 Total: -1.00 -33.15 301.80 -7.32 -40.46 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -4.73 Total: 2.19 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.88 Total: -9.20 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.42 Total: -45.15 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.04 Total: -14.14 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -3.81 Total: 19.82 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.91 Total: 1.47 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.15 -7.32 -40.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345717289.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.324 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds