Wall clock time and date at job start Tue Mar 31 2020 06:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31315 * 1 3 3 Si 1.86797 * 119.99780 * 2 1 4 4 H 1.48500 * 109.47176 * 275.78232 * 3 2 1 5 5 H 1.48498 * 109.47093 * 35.78554 * 3 2 1 6 6 H 1.48499 * 109.46825 * 155.78292 * 3 2 1 7 7 C 1.39147 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00309 * 355.03613 * 7 2 1 9 9 N 1.36665 * 119.99658 * 175.02936 * 7 2 1 10 10 C 1.34777 * 119.99928 * 308.20312 * 9 7 2 11 11 O 1.21792 * 120.00143 * 4.84118 * 10 9 7 12 12 C 1.41742 * 119.99806 * 184.84714 * 10 9 7 13 13 C 1.35435 * 119.99921 * 182.89186 * 12 10 9 14 14 C 1.46293 * 120.00246 * 10.44072 * 13 12 10 15 15 N 1.30882 * 125.55583 * 244.05093 * 14 13 12 16 16 C 1.30818 * 115.79810 * 179.97438 * 15 14 13 17 17 C 1.34166 * 115.81249 * 0.02562 * 16 15 14 18 18 S 1.71063 * 109.16230 * 359.72721 * 17 16 15 19 19 C 1.46498 * 119.99621 * 128.20175 * 9 7 2 20 20 C 1.55236 * 110.58195 * 52.01513 * 19 9 7 21 21 C 1.54887 * 102.58830 * 203.33355 * 20 19 9 22 22 C 1.54270 * 104.30946 * 37.93371 * 21 20 19 23 23 C 1.53872 * 106.60181 * 336.32181 * 22 21 20 24 24 H 0.96996 * 120.00155 * 359.97438 * 1 2 3 25 25 H 1.07996 * 119.99836 * 2.88947 * 12 10 9 26 26 H 1.08000 * 119.99877 * 190.44324 * 13 12 10 27 27 H 1.08009 * 122.09618 * 180.02562 * 16 15 14 28 28 H 1.08001 * 125.42038 * 180.02562 * 17 16 15 29 29 H 1.08997 * 110.43019 * 174.59978 * 19 9 7 30 30 H 1.09003 * 110.89719 * 85.04428 * 20 19 9 31 31 H 1.08998 * 110.76571 * 321.57191 * 20 19 9 32 32 H 1.08995 * 110.49184 * 279.19161 * 21 20 19 33 33 H 1.08996 * 110.48956 * 156.67372 * 21 20 19 34 34 H 1.09007 * 110.03072 * 95.60501 * 22 21 20 35 35 H 1.09003 * 110.03727 * 216.98641 * 22 21 20 36 36 H 1.09000 * 110.03384 * 119.28415 * 23 22 21 37 37 H 1.09002 * 110.03551 * 240.66939 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 2.3724 2.1170 -1.3929 5 1 1.5110 2.6143 0.8187 6 1 3.6004 1.4080 0.5743 7 6 2.0088 -1.2051 -0.0005 8 1 1.4719 -2.1386 0.0800 9 7 3.3716 -1.2072 -0.1031 10 6 3.9736 -0.5264 -1.0984 11 8 3.3105 0.1619 -1.8533 12 6 5.3784 -0.6115 -1.2666 13 6 5.9905 0.1180 -2.2296 14 6 5.2487 1.1586 -2.9416 15 7 4.9731 1.1566 -4.2211 16 6 4.2959 2.1865 -4.6592 17 6 3.9741 3.1084 -3.7391 18 16 4.5747 2.6144 -2.2154 19 6 4.1781 -1.9495 0.8689 20 6 3.6812 -3.4157 0.9839 21 6 4.1794 -3.8316 2.3903 22 6 3.9847 -2.5677 3.2530 23 6 3.9838 -1.3710 2.2857 24 1 -0.4850 0.8400 0.0004 25 1 5.9606 -1.2582 -0.6269 26 1 7.0264 -0.0684 -2.4718 27 1 4.0134 2.2884 -5.6967 28 1 3.4197 4.0155 -3.9291 29 1 5.2309 -1.9248 0.5878 30 1 4.1329 -4.0409 0.2136 31 1 2.5935 -3.4605 0.9304 32 1 5.2324 -4.1108 2.3549 33 1 3.5803 -4.6549 2.7792 34 1 3.0334 -2.6201 3.7828 35 1 4.8039 -2.4720 3.9657 36 1 3.0323 -0.8427 2.3461 37 1 4.8026 -0.6938 2.5288 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345717289.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:30 Heat of formation + Delta-G solvation = 30.060884 kcal Electronic energy + Delta-G solvation = -21910.110367 eV Core-core repulsion = 18779.751809 eV Total energy + Delta-G solvation = -3130.358557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.37297 -40.24405 -38.67692 -35.73247 -34.63007 -33.88208 -30.75279 -29.48150 -28.63448 -27.82479 -25.94944 -23.61400 -21.77652 -21.45744 -20.90517 -20.39327 -19.37820 -18.26470 -17.93926 -17.30423 -16.70892 -16.14634 -15.87841 -15.76956 -15.47689 -15.10190 -14.88619 -14.55422 -14.16337 -13.99213 -13.86970 -13.40925 -13.31354 -12.79066 -12.55231 -12.35536 -12.28630 -11.93094 -11.84590 -11.81957 -11.41968 -11.16336 -11.05930 -10.87278 -10.74919 -10.36259 -9.98452 -9.38542 -9.06437 -8.36782 -6.25630 -0.51892 0.18965 0.74233 0.93188 1.30692 1.41535 1.55695 1.97266 2.34954 2.64128 2.80935 3.03237 3.35572 3.83723 3.90326 4.00494 4.11131 4.26155 4.29137 4.44062 4.59691 4.65239 4.68350 4.71362 4.78148 4.94541 5.00082 5.07154 5.12974 5.19950 5.31117 5.37265 5.43082 5.55840 5.62085 5.71142 5.97151 6.79200 6.79804 6.92583 7.33012 7.86154 8.67895 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.007051 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.818572 B = 3970.127921 C = 4703.907311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.033 3.967 3 Si 0.962 3.038 4 H -0.236 1.236 5 H -0.335 1.335 6 H -0.264 1.264 7 C -0.314 4.314 8 H 0.063 0.937 9 N -0.459 5.459 10 C 0.461 3.539 11 O -0.578 6.578 12 C -0.172 4.172 13 C -0.015 4.015 14 C 0.091 3.909 15 N -0.481 5.481 16 C 0.020 3.980 17 C -0.303 4.303 18 S 0.142 5.858 19 C 0.114 3.886 20 C -0.130 4.130 21 C -0.110 4.110 22 C -0.114 4.114 23 C -0.136 4.136 24 H 0.269 0.731 25 H 0.185 0.815 26 H 0.201 0.799 27 H 0.189 0.811 28 H 0.192 0.808 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.037 0.963 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.636 -0.382 1.919 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.169 4.169 3 Si 0.795 3.205 4 H -0.163 1.163 5 H -0.268 1.268 6 H -0.189 1.189 7 C -0.442 4.442 8 H 0.080 0.920 9 N -0.179 5.179 10 C 0.256 3.744 11 O -0.466 6.466 12 C -0.197 4.197 13 C -0.038 4.038 14 C -0.182 4.182 15 N -0.197 5.197 16 C -0.136 4.136 17 C -0.443 4.443 18 S 0.401 5.599 19 C 0.011 3.989 20 C -0.169 4.169 21 C -0.147 4.147 22 C -0.152 4.152 23 C -0.175 4.175 24 H 0.078 0.922 25 H 0.202 0.798 26 H 0.218 0.782 27 H 0.206 0.794 28 H 0.209 0.791 29 H 0.139 0.861 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.260 0.031 2.246 16.415 hybrid contribution -1.447 0.982 -0.973 2.002 sum 14.813 1.013 1.273 14.902 Atomic orbital electron populations 1.69748 1.08238 1.28372 1.49849 1.26216 0.95493 1.02512 0.92665 0.85516 0.78029 0.78590 0.78349 1.16297 1.26756 1.18945 1.18474 0.80999 0.93047 1.51686 0.91955 1.43802 1.05415 1.45365 1.23304 1.18245 0.90343 0.84182 0.81677 1.90597 1.67305 1.42431 1.46293 1.22838 0.93451 1.02706 1.00745 1.22030 1.00507 0.89433 0.91846 1.26319 1.00756 0.99432 0.91646 1.67068 1.16672 1.24211 1.11713 1.21878 0.99736 0.89444 1.02497 1.26529 1.12904 1.08656 0.96212 1.83835 1.46300 1.18096 1.11634 1.22618 0.95702 0.91999 0.88551 1.22802 1.00521 0.94914 0.98631 1.22267 1.02324 0.97047 0.93094 1.22039 1.01847 0.93755 0.97533 1.22461 1.01300 0.98897 0.94810 0.92231 0.79799 0.78191 0.79374 0.79055 0.86123 0.90632 0.93839 0.88760 0.91298 0.93310 0.89323 0.94431 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.98 13.95 21.70 0.30 -58.68 16 2 C 0.03 2.01 5.19 84.99 0.44 2.45 16 3 Si 0.96 50.65 22.42 68.60 1.54 52.18 16 4 H -0.24 -12.46 4.75 99.47 0.47 -11.99 16 5 H -0.33 -18.02 7.11 99.48 0.71 -17.31 16 6 H -0.26 -12.86 6.76 99.48 0.67 -12.19 16 7 C -0.31 -17.65 8.06 84.16 0.68 -16.98 16 8 H 0.06 3.84 6.79 -2.91 -0.02 3.82 16 9 N -0.46 -20.75 2.12 -616.79 -1.31 -22.05 16 10 C 0.46 20.36 5.41 85.11 0.46 20.82 16 11 O -0.58 -30.14 8.55 -4.64 -0.04 -30.18 16 12 C -0.17 -5.35 9.23 22.49 0.21 -5.14 16 13 C -0.01 -0.42 10.23 23.72 0.24 -0.18 16 14 C 0.09 3.33 4.96 86.93 0.43 3.76 16 15 N -0.48 -18.46 10.67 -190.97 -2.04 -20.50 16 16 C 0.02 0.70 11.24 83.91 0.94 1.65 16 17 C -0.30 -10.32 11.08 66.89 0.74 -9.58 16 18 S 0.14 5.31 17.75 -56.49 -1.00 4.30 16 19 C 0.11 3.78 3.14 46.19 0.15 3.93 16 20 C -0.13 -4.02 6.41 32.01 0.21 -3.81 16 21 C -0.11 -2.47 6.82 31.67 0.22 -2.26 16 22 C -0.11 -2.85 6.80 31.32 0.21 -2.64 16 23 C -0.14 -4.41 6.43 31.32 0.20 -4.21 16 24 H 0.27 16.38 8.31 -92.71 -0.77 15.61 16 25 H 0.19 3.81 5.72 -2.91 -0.02 3.79 16 26 H 0.20 3.50 8.06 -2.91 -0.02 3.47 16 27 H 0.19 5.26 8.06 -2.91 -0.02 5.23 16 28 H 0.19 5.30 8.06 -2.91 -0.02 5.27 16 29 H 0.12 2.96 5.27 -2.39 -0.01 2.94 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 1.70 6.37 -2.39 -0.02 1.69 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.04 1.57 7.24 -2.39 -0.02 1.55 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -78.55 301.80 3.39 -75.16 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.81 Total: 11.95 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 5.13 Total: -12.18 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -3.04 Total: -101.23 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.04 Total: -30.18 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 1.54 Total: 52.18 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -1.00 Total: 4.30 kcal Total: -78.55 3.39 -75.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345717289.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.220 kcal (2) G-P(sol) polarization free energy of solvation -78.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds