Wall clock time and date at job start Tue Mar 31 2020 06:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00146 * 2 1 4 4 H 1.48501 * 109.47020 * 239.99753 * 3 2 1 5 5 H 1.48500 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47448 * 119.99895 * 3 2 1 7 7 C 1.37878 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00108 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99607 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.49838 * 300.05737 * 9 7 2 11 11 C 1.53053 * 109.49393 * 179.97438 * 9 7 2 12 12 C 1.53038 * 109.53544 * 178.65248 * 11 9 7 13 13 C 1.53185 * 109.31593 * 61.36453 * 12 11 9 14 14 N 1.46928 * 108.77565 * 305.36730 * 13 12 11 15 15 C 1.34778 * 120.62822 * 233.58152 * 14 13 12 16 16 O 1.21721 * 120.00089 * 174.73953 * 15 14 13 17 17 C 1.46247 * 120.00097 * 355.01677 * 15 14 13 18 18 C 1.35247 * 120.00326 * 198.51874 * 17 15 14 19 19 C 1.46404 * 119.99587 * 28.66569 * 18 17 15 20 20 N 1.30833 * 125.54775 * 187.60397 * 19 18 17 21 21 C 1.30809 * 115.81236 * 179.97438 * 20 19 18 22 22 C 1.34169 * 115.80788 * 359.97438 * 21 20 19 23 23 S 1.71067 * 109.15316 * 359.75251 * 22 21 20 24 24 C 1.46922 * 118.74286 * 53.85678 * 14 13 12 25 25 H 0.96995 * 120.00138 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.45565 * 58.63232 * 11 9 7 27 27 H 1.08993 * 109.46074 * 298.67246 * 11 9 7 28 28 H 1.09009 * 109.49835 * 301.41253 * 12 11 9 29 29 H 1.08997 * 109.49407 * 181.32072 * 12 11 9 30 30 H 1.08997 * 109.59064 * 185.57931 * 13 12 11 31 31 H 1.09004 * 109.70350 * 65.22136 * 13 12 11 32 32 H 1.07999 * 120.00143 * 18.51595 * 17 15 14 33 33 H 1.08003 * 120.00138 * 208.66736 * 18 17 15 34 34 H 1.08004 * 122.09599 * 179.97438 * 21 20 19 35 35 H 1.07999 * 125.42687 * 180.02562 * 22 21 20 36 36 H 1.09005 * 109.58343 * 65.92355 * 24 14 13 37 37 H 1.08991 * 109.58737 * 186.35235 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6230 -2.5567 0.8896 11 6 2.2450 -3.6629 0.0005 12 6 1.4809 -4.9885 0.0345 13 6 0.6051 -5.1007 -1.2173 14 7 -0.2534 -3.9114 -1.3020 15 6 -1.5898 -4.0365 -1.4239 16 8 -2.2987 -3.0474 -1.3968 17 6 -2.1888 -5.3612 -1.5828 18 6 -3.4439 -5.4817 -2.0721 19 6 -3.9697 -4.4738 -2.9946 20 7 -5.2044 -4.4040 -3.4217 21 6 -5.4678 -3.4218 -4.2445 22 6 -4.4370 -2.6157 -4.5408 23 16 -3.0456 -3.1528 -3.7030 24 6 0.3730 -2.5832 -1.2573 25 1 -0.4850 0.8400 -0.0004 26 1 2.8875 -3.5915 0.8781 27 1 2.8557 -3.6188 -0.9011 28 1 0.8510 -5.0228 0.9235 29 1 2.1896 -5.8163 0.0581 30 1 -0.0147 -5.9948 -1.1507 31 1 1.2368 -5.1592 -2.1038 32 1 -1.6289 -6.2434 -1.3094 33 1 -4.0582 -6.3215 -1.7823 34 1 -6.4533 -3.2692 -4.6592 35 1 -4.4799 -1.7610 -5.1996 36 1 0.9880 -2.4392 -2.1458 37 1 -0.3999 -1.8158 -1.2171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347073575.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:46 Heat of formation + Delta-G solvation = 41.276346 kcal Electronic energy + Delta-G solvation = -21205.781159 eV Core-core repulsion = 18075.908941 eV Total energy + Delta-G solvation = -3129.872218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.69382 -39.15631 -36.93402 -33.69719 -33.29047 -31.83849 -29.96670 -29.39741 -26.04993 -25.06170 -24.48906 -22.17899 -21.76324 -20.06522 -19.49357 -18.35153 -17.29075 -16.89125 -16.20101 -15.60131 -14.89677 -14.77226 -14.46219 -14.13240 -13.93829 -13.75812 -13.40150 -13.04385 -12.69170 -12.63677 -12.43385 -12.26450 -11.90458 -11.02654 -10.95364 -10.88923 -10.56533 -10.44074 -10.27382 -10.07628 -9.91989 -9.72249 -9.36726 -9.15471 -9.12455 -8.91195 -8.45238 -7.85500 -7.64252 -6.02131 -4.11188 0.22753 1.70004 1.84532 2.17306 3.15464 3.29502 3.36132 3.37025 3.56898 3.74162 4.31441 4.40514 4.89746 5.12555 5.27292 5.28868 5.35162 5.45155 5.52456 5.62186 5.68205 5.92276 6.02921 6.05981 6.14020 6.26752 6.42453 6.56675 6.62146 6.80745 6.92778 7.08852 7.19221 7.59489 7.82803 7.89187 7.95176 8.16094 8.34733 8.70852 8.92579 9.54508 11.02870 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.005334 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.216983 B = 5247.655304 C = 6529.452308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.135 4.135 13 C 0.105 3.895 14 N -0.591 5.591 15 C 0.520 3.480 16 O -0.519 6.519 17 C -0.204 4.204 18 C 0.005 3.995 19 C 0.025 3.975 20 N -0.453 5.453 21 C 0.017 3.983 22 C -0.321 4.321 23 S 0.286 5.714 24 C 0.109 3.891 25 H 0.264 0.736 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.164 0.836 35 H 0.171 0.829 36 H 0.045 0.955 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 -11.706 -7.001 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.149 4.149 12 C -0.173 4.173 13 C -0.018 4.018 14 N -0.322 5.322 15 C 0.308 3.692 16 O -0.400 6.400 17 C -0.231 4.231 18 C -0.018 4.018 19 C -0.244 4.244 20 N -0.168 5.168 21 C -0.142 4.142 22 C -0.463 4.463 23 S 0.546 5.454 24 C -0.011 4.011 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.166 0.834 33 H 0.169 0.831 34 H 0.181 0.819 35 H 0.188 0.812 36 H 0.063 0.937 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.268 -11.048 -6.775 13.365 hybrid contribution -0.477 1.135 -0.281 1.263 sum -3.745 -9.913 -7.056 12.731 Atomic orbital electron populations 1.69877 1.05686 1.26951 1.49127 1.25043 0.94870 0.99195 0.94822 0.86674 0.79602 0.83231 0.78598 1.20251 1.21278 1.20273 1.21037 0.92864 0.90138 1.52075 0.92438 1.19041 0.92620 0.92284 0.93942 0.95216 1.21633 0.98573 0.94059 1.00623 1.21956 0.98659 0.99187 0.97477 1.21758 0.93575 0.87814 0.98696 1.48551 1.05231 1.09286 1.69124 1.18423 0.82786 0.88945 0.79054 1.90847 1.60293 1.39169 1.49657 1.23449 0.96029 0.98114 1.05492 1.21345 0.92935 0.95880 0.91637 1.26176 0.92512 1.01159 1.04594 1.66958 1.16303 1.22063 1.11502 1.21436 1.00691 0.92545 0.99502 1.27102 1.01779 1.08234 1.09173 1.84737 1.10700 1.20845 1.29099 1.22447 0.98790 0.81172 0.98680 0.92596 0.92990 0.93153 0.92038 0.92095 0.90788 0.91716 0.83410 0.83077 0.81926 0.81181 0.93683 0.85760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.10 11.41 55.43 0.63 -24.46 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -13.78 8.56 -34.44 -0.29 -14.07 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.96 2.26 -91.42 -0.21 0.75 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.10 5.10 -26.68 -0.14 -2.24 16 12 C -0.13 -2.01 6.08 -26.62 -0.16 -2.17 16 13 C 0.11 1.48 6.31 -3.71 -0.02 1.46 16 14 N -0.59 -10.98 2.97 -174.21 -0.52 -11.50 16 15 C 0.52 9.66 6.20 -13.04 -0.08 9.58 16 16 O -0.52 -11.64 12.21 5.17 0.06 -11.58 16 17 C -0.20 -2.81 9.19 -37.43 -0.34 -3.15 16 18 C 0.00 0.07 10.07 -37.36 -0.38 -0.31 16 19 C 0.02 0.40 6.80 -14.69 -0.10 0.30 16 20 N -0.45 -7.47 10.67 -11.69 -0.12 -7.59 16 21 C 0.02 0.25 11.24 -19.42 -0.22 0.03 16 22 C -0.32 -4.66 11.08 29.30 0.32 -4.34 16 23 S 0.29 4.75 18.43 -107.50 -1.98 2.77 16 24 C 0.11 2.49 5.44 -3.49 -0.02 2.48 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.80 5.40 -51.93 -0.28 0.52 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.15 1.47 6.00 -52.49 -0.32 1.16 16 33 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.16 1.89 8.06 -52.48 -0.42 1.46 16 35 H 0.17 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.12 3.34 5.14 -51.93 -0.27 3.07 16 LS Contribution 313.95 15.07 4.73 4.73 Total: -1.00 -31.32 313.95 -8.58 -39.90 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -4.63 Total: 1.92 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -1.73 Total: -10.06 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -0.01 Total: -43.55 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.06 Total: -11.58 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.98 Total: 2.77 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.32 -8.58 -39.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347073575.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.179 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds