Wall clock time and date at job start Tue Mar 31 2020 06:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00146 * 2 1 4 4 H 1.48501 * 109.47020 * 239.99753 * 3 2 1 5 5 H 1.48500 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47448 * 119.99895 * 3 2 1 7 7 C 1.37878 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00108 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99607 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.49838 * 300.05737 * 9 7 2 11 11 C 1.53053 * 109.49393 * 179.97438 * 9 7 2 12 12 C 1.53038 * 109.53544 * 178.65248 * 11 9 7 13 13 C 1.53185 * 109.31593 * 61.36453 * 12 11 9 14 14 N 1.46928 * 108.77565 * 305.36730 * 13 12 11 15 15 C 1.34778 * 120.62822 * 233.58152 * 14 13 12 16 16 O 1.21721 * 120.00089 * 174.73953 * 15 14 13 17 17 C 1.46247 * 120.00097 * 355.01677 * 15 14 13 18 18 C 1.35247 * 120.00326 * 198.51874 * 17 15 14 19 19 C 1.46404 * 119.99587 * 28.66569 * 18 17 15 20 20 N 1.30833 * 125.54775 * 187.60397 * 19 18 17 21 21 C 1.30809 * 115.81236 * 179.97438 * 20 19 18 22 22 C 1.34169 * 115.80788 * 359.97438 * 21 20 19 23 23 S 1.71067 * 109.15316 * 359.75251 * 22 21 20 24 24 C 1.46922 * 118.74286 * 53.85678 * 14 13 12 25 25 H 0.96995 * 120.00138 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.45565 * 58.63232 * 11 9 7 27 27 H 1.08993 * 109.46074 * 298.67246 * 11 9 7 28 28 H 1.09009 * 109.49835 * 301.41253 * 12 11 9 29 29 H 1.08997 * 109.49407 * 181.32072 * 12 11 9 30 30 H 1.08997 * 109.59064 * 185.57931 * 13 12 11 31 31 H 1.09004 * 109.70350 * 65.22136 * 13 12 11 32 32 H 1.07999 * 120.00143 * 18.51595 * 17 15 14 33 33 H 1.08003 * 120.00138 * 208.66736 * 18 17 15 34 34 H 1.08004 * 122.09599 * 179.97438 * 21 20 19 35 35 H 1.07999 * 125.42687 * 180.02562 * 22 21 20 36 36 H 1.09005 * 109.58343 * 65.92355 * 24 14 13 37 37 H 1.08991 * 109.58737 * 186.35235 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6230 -2.5567 0.8896 11 6 2.2450 -3.6629 0.0005 12 6 1.4809 -4.9885 0.0345 13 6 0.6051 -5.1007 -1.2173 14 7 -0.2534 -3.9114 -1.3020 15 6 -1.5898 -4.0365 -1.4239 16 8 -2.2987 -3.0474 -1.3968 17 6 -2.1888 -5.3612 -1.5828 18 6 -3.4439 -5.4817 -2.0721 19 6 -3.9697 -4.4738 -2.9946 20 7 -5.2044 -4.4040 -3.4217 21 6 -5.4678 -3.4218 -4.2445 22 6 -4.4370 -2.6157 -4.5408 23 16 -3.0456 -3.1528 -3.7030 24 6 0.3730 -2.5832 -1.2573 25 1 -0.4850 0.8400 -0.0004 26 1 2.8875 -3.5915 0.8781 27 1 2.8557 -3.6188 -0.9011 28 1 0.8510 -5.0228 0.9235 29 1 2.1896 -5.8163 0.0581 30 1 -0.0147 -5.9948 -1.1507 31 1 1.2368 -5.1592 -2.1038 32 1 -1.6289 -6.2434 -1.3094 33 1 -4.0582 -6.3215 -1.7823 34 1 -6.4533 -3.2692 -4.6592 35 1 -4.4799 -1.7610 -5.1996 36 1 0.9880 -2.4392 -2.1458 37 1 -0.3999 -1.8158 -1.2171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347073575.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:46 Heat of formation + Delta-G solvation = 21.224844 kcal Electronic energy + Delta-G solvation = -21206.650658 eV Core-core repulsion = 18075.908941 eV Total energy + Delta-G solvation = -3130.741717 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.09806 -40.35415 -38.43892 -35.31559 -34.69130 -33.42141 -31.55856 -30.64449 -27.54859 -26.73276 -25.84085 -23.61927 -23.15661 -21.31702 -20.95637 -19.70391 -18.73798 -18.21930 -17.97576 -16.94035 -16.51605 -16.27803 -15.91728 -15.37628 -15.17530 -15.13255 -14.75713 -14.59140 -14.28747 -13.87669 -13.76773 -13.69511 -13.40273 -12.85502 -12.65929 -12.26671 -12.23437 -12.10821 -11.75360 -11.59788 -11.21032 -11.16861 -10.92913 -10.83567 -10.56984 -10.52097 -10.28695 -9.21575 -8.97515 -8.09338 -6.25947 -0.93133 0.50913 0.70373 0.98854 1.41060 1.41665 1.49902 1.92396 2.24102 2.38212 2.44267 3.18768 3.22860 3.74925 4.04967 4.18767 4.23305 4.30344 4.38299 4.51691 4.58636 4.66827 4.78869 4.84015 4.90053 5.01571 5.03697 5.14634 5.28891 5.31316 5.34931 5.45486 5.57125 5.68079 5.93919 6.03506 6.35449 6.68204 6.71319 6.86537 7.30784 7.44065 8.93188 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.005334 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.216983 B = 5247.655304 C = 6529.452308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.037 3.963 10 H -0.015 1.015 11 C -0.107 4.107 12 C -0.127 4.127 13 C 0.098 3.902 14 N -0.597 5.597 15 C 0.509 3.491 16 O -0.568 6.568 17 C -0.195 4.195 18 C 0.007 3.993 19 C 0.018 3.982 20 N -0.467 5.467 21 C 0.008 3.992 22 C -0.316 4.316 23 S 0.227 5.773 24 C 0.125 3.875 25 H 0.258 0.742 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.196 0.804 33 H 0.191 0.809 34 H 0.194 0.806 35 H 0.194 0.806 36 H 0.038 0.962 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 -14.274 -7.560 16.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.018 3.982 10 H 0.003 0.997 11 C -0.144 4.144 12 C -0.165 4.165 13 C -0.023 4.023 14 N -0.327 5.327 15 C 0.300 3.700 16 O -0.452 6.452 17 C -0.221 4.221 18 C -0.015 4.015 19 C -0.251 4.251 20 N -0.182 5.182 21 C -0.149 4.149 22 C -0.457 4.457 23 S 0.486 5.514 24 C 0.003 3.997 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.123 0.877 30 H 0.137 0.863 31 H 0.101 0.899 32 H 0.213 0.787 33 H 0.208 0.792 34 H 0.211 0.789 35 H 0.211 0.789 36 H 0.057 0.943 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.805 -13.656 -7.340 15.755 hybrid contribution -0.657 1.952 -0.122 2.063 sum -3.461 -11.704 -7.462 14.305 Atomic orbital electron populations 1.70080 1.07265 1.27141 1.50586 1.25833 0.95506 1.02652 0.94696 0.85696 0.78345 0.79096 0.79058 1.19169 1.21630 1.19490 1.21500 0.93218 0.91656 1.51147 0.92197 1.18984 0.93136 0.93653 0.92416 0.99666 1.21527 0.97690 0.94466 1.00754 1.21923 0.99072 0.97968 0.97564 1.22152 0.93875 0.87301 0.98970 1.48542 1.06006 1.08966 1.69184 1.19255 0.82410 0.90430 0.77940 1.90832 1.61359 1.41398 1.51610 1.23529 0.95972 0.96681 1.05932 1.21833 0.93024 0.96115 0.90526 1.26707 0.92324 1.01083 1.05019 1.67010 1.16251 1.22832 1.12126 1.21957 1.01980 0.91977 0.98995 1.27303 1.00458 1.08874 1.09052 1.84961 1.12920 1.22693 1.30837 1.21769 0.97196 0.83028 0.97707 0.93276 0.93363 0.92464 0.93030 0.87705 0.86330 0.89912 0.78683 0.79189 0.78931 0.78857 0.94335 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.89 11.41 21.45 0.24 -54.65 16 2 C 0.01 0.71 5.30 84.65 0.45 1.16 16 3 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.54 -29.15 8.56 25.60 0.22 -28.93 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.04 1.83 2.26 -11.31 -0.03 1.81 16 10 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 11 C -0.11 -3.94 5.10 30.62 0.16 -3.78 16 12 C -0.13 -3.42 6.08 30.67 0.19 -3.23 16 13 C 0.10 2.44 6.31 86.36 0.55 2.98 16 14 N -0.60 -21.92 2.97 -823.29 -2.44 -24.37 16 15 C 0.51 18.78 6.20 86.32 0.54 19.32 16 16 O -0.57 -26.54 12.21 -4.42 -0.05 -26.59 16 17 C -0.20 -4.80 9.19 23.66 0.22 -4.58 16 18 C 0.01 0.18 10.07 23.71 0.24 0.42 16 19 C 0.02 0.57 6.80 86.97 0.59 1.16 16 20 N -0.47 -14.79 10.67 -190.90 -2.04 -16.82 16 21 C 0.01 0.23 11.24 83.92 0.94 1.18 16 22 C -0.32 -9.05 11.08 66.89 0.74 -8.31 16 23 S 0.23 7.69 18.43 -56.49 -1.04 6.65 16 24 C 0.13 5.96 5.44 86.51 0.47 6.43 16 25 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.12 1.89 5.40 -2.39 -0.01 1.88 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.20 2.77 6.00 -2.91 -0.02 2.76 16 33 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.19 4.06 8.06 -2.91 -0.02 4.04 16 35 H 0.19 4.39 8.06 -2.91 -0.02 4.36 16 36 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.08 4.55 5.14 -2.39 -0.01 4.54 16 Total: -1.00 -74.29 313.95 3.04 -71.25 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.08 Total: 12.97 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 5.27 Total: -14.37 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -4.23 Total: -95.84 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.05 Total: -26.59 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 7.69 SS G_CDS: -1.04 Total: 6.65 kcal Total: -74.29 3.04 -71.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347073575.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.471 kcal (2) G-P(sol) polarization free energy of solvation -74.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds