Wall clock time and date at job start Tue Mar 31 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99764 * 2 1 4 4 H 1.48497 * 109.46888 * 270.00159 * 3 2 1 5 5 H 1.48504 * 109.47071 * 30.00413 * 3 2 1 6 6 H 1.48496 * 109.47024 * 150.00421 * 3 2 1 7 7 C 1.37877 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00200 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99999 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.49661 * 59.92783 * 9 7 2 11 11 C 1.53040 * 109.49770 * 179.97438 * 9 7 2 12 12 C 1.53043 * 109.53487 * 181.31414 * 11 9 7 13 13 C 1.53190 * 109.31477 * 298.63222 * 12 11 9 14 14 N 1.46931 * 108.77253 * 54.63490 * 13 12 11 15 15 C 1.34783 * 120.62562 * 126.36856 * 14 13 12 16 16 O 1.21727 * 119.99391 * 174.87664 * 15 14 13 17 17 C 1.46247 * 120.00307 * 354.88252 * 15 14 13 18 18 C 1.35237 * 120.00316 * 185.18678 * 17 15 14 19 19 C 1.46400 * 120.00566 * 179.97438 * 18 17 15 20 20 N 1.30828 * 125.54554 * 359.69105 * 19 18 17 21 21 C 1.30821 * 115.81156 * 179.77865 * 20 19 18 22 22 C 1.34165 * 115.79907 * 0.51877 * 21 20 19 23 23 S 1.71056 * 109.16055 * 359.72284 * 22 21 20 24 24 C 1.46919 * 118.73976 * 306.64468 * 14 13 12 25 25 H 0.96995 * 120.00048 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46281 * 61.29364 * 11 9 7 27 27 H 1.08999 * 109.45907 * 301.33452 * 11 9 7 28 28 H 1.08998 * 109.49371 * 178.67880 * 12 11 9 29 29 H 1.09005 * 109.49642 * 58.58878 * 12 11 9 30 30 H 1.08999 * 109.58766 * 294.85246 * 13 12 11 31 31 H 1.08999 * 109.70319 * 174.48874 * 13 12 11 32 32 H 1.08002 * 120.00132 * 5.17992 * 17 15 14 33 33 H 1.08002 * 119.99552 * 359.97438 * 18 17 15 34 34 H 1.08000 * 122.09847 * 180.24241 * 21 20 19 35 35 H 1.08002 * 125.41850 * 179.72591 * 22 21 20 36 36 H 1.09005 * 109.58862 * 173.14286 * 24 14 13 37 37 H 1.09003 * 109.58921 * 293.56680 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8757 -0.6793 0.8881 11 6 4.0224 -2.6366 -0.0010 12 6 5.5525 -2.6377 0.0315 13 6 6.0864 -1.9359 -1.2212 14 7 5.4855 -0.5978 -1.3058 15 6 6.2621 0.4971 -1.4280 16 8 5.7516 1.5901 -1.5908 17 6 7.7178 0.3719 -1.3650 18 6 8.4932 1.4798 -1.3821 19 6 9.9505 1.3545 -1.3186 20 7 10.6144 0.2301 -1.2376 21 6 11.9173 0.3397 -1.1961 22 6 12.3995 1.5913 -1.2312 23 16 11.0947 2.6929 -1.3310 24 6 4.0226 -0.4754 -1.2485 25 1 -0.4850 0.8400 0.0004 26 1 3.6780 -3.1440 -0.9021 27 1 3.6402 -3.1571 0.8771 28 1 5.9151 -3.6654 0.0553 29 1 5.8979 -2.1090 0.9199 30 1 5.8183 -2.5134 -2.1059 31 1 7.1708 -1.8462 -1.1581 32 1 8.1737 -0.6053 -1.3048 33 1 8.0373 2.4570 -1.4427 34 1 12.5641 -0.5229 -1.1329 35 1 13.4450 1.8603 -1.2012 36 1 3.7456 0.5778 -1.2010 37 1 3.5827 -0.9313 -2.1355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347073577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:50 Heat of formation + Delta-G solvation = 32.533647 kcal Electronic energy + Delta-G solvation = -20627.527256 eV Core-core repulsion = 17497.275926 eV Total energy + Delta-G solvation = -3130.251330 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03831 -39.65075 -37.08981 -34.03501 -33.35681 -31.94211 -30.66332 -29.75322 -26.72483 -25.21091 -24.73601 -22.58215 -22.04179 -20.30701 -19.16700 -18.57407 -18.05967 -17.15582 -16.71753 -15.89846 -15.56592 -14.90311 -14.64159 -14.44109 -14.02571 -13.95501 -13.88497 -13.28542 -13.01346 -12.83424 -12.57616 -12.28211 -12.07015 -11.81128 -11.23849 -11.06483 -10.71168 -10.58930 -10.41065 -10.13379 -10.10357 -9.78901 -9.78093 -9.64916 -9.19561 -9.08834 -8.64131 -8.57978 -8.05350 -6.10270 -4.11851 -0.11843 0.95828 1.42139 1.48480 2.67101 3.34682 3.38543 3.47668 3.54209 3.56999 3.86299 4.42528 4.60979 4.78858 4.88130 5.08296 5.11921 5.22084 5.27058 5.35640 5.52626 5.77125 5.81169 5.94536 6.03602 6.10368 6.12032 6.21993 6.41229 6.53404 6.65740 6.75371 6.85777 7.15170 7.34950 7.43516 7.71614 7.82261 8.43412 8.52617 8.93022 9.51304 11.01784 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025667 B = 0.003862 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.635296 B = 7248.497799 C = 8122.166001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.516 4.516 8 H 0.078 0.922 9 C 0.004 3.996 10 H 0.030 0.970 11 C -0.101 4.101 12 C -0.137 4.137 13 C 0.104 3.896 14 N -0.597 5.597 15 C 0.533 3.467 16 O -0.546 6.546 17 C -0.132 4.132 18 C -0.038 4.038 19 C 0.075 3.925 20 N -0.454 5.454 21 C 0.038 3.962 22 C -0.291 4.291 23 S 0.167 5.833 24 C 0.102 3.898 25 H 0.265 0.735 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.174 0.826 35 H 0.179 0.821 36 H 0.079 0.921 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.723 0.573 -2.987 24.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.554 4.554 8 H 0.096 0.904 9 C -0.016 4.016 10 H 0.048 0.952 11 C -0.139 4.139 12 C -0.175 4.175 13 C -0.019 4.019 14 N -0.328 5.328 15 C 0.322 3.678 16 O -0.426 6.426 17 C -0.159 4.159 18 C -0.061 4.061 19 C -0.196 4.196 20 N -0.168 5.168 21 C -0.118 4.118 22 C -0.432 4.432 23 S 0.425 5.575 24 C -0.018 4.018 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.191 0.809 35 H 0.196 0.804 36 H 0.097 0.903 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 23.968 1.875 -3.111 24.242 hybrid contribution 1.193 0.076 0.051 1.197 sum 25.161 1.951 -3.060 25.422 Atomic orbital electron populations 1.69886 1.06271 1.27159 1.50022 1.25044 0.94756 0.99093 0.94076 0.86995 0.79643 0.83499 0.79040 1.19771 1.22248 1.18941 1.20952 0.88154 0.94642 1.51654 0.90411 1.19426 0.96880 0.92318 0.92962 0.95160 1.21445 0.92043 0.98757 1.01606 1.21997 0.98528 0.99639 0.97368 1.21851 0.97691 0.83257 0.99074 1.48347 1.08520 1.05858 1.70077 1.18244 0.87035 0.84510 0.78060 1.90817 1.75499 1.26269 1.50054 1.23431 0.93348 1.00089 0.99079 1.21414 0.86283 1.00572 0.97829 1.26153 0.98595 0.90122 1.04731 1.67027 1.07074 1.27537 1.15165 1.21723 0.90348 0.97415 1.02315 1.26539 1.05640 0.97465 1.13511 1.83950 0.96853 1.11747 1.64980 1.22560 0.75431 1.02561 1.01273 0.92492 0.92445 0.92159 0.91496 0.91925 0.91224 0.90128 0.83863 0.83073 0.80866 0.80412 0.90297 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 2 C 0.07 2.12 5.45 -17.82 -0.10 2.03 16 3 Si 0.88 23.21 24.32 -169.99 -4.13 19.08 16 4 H -0.27 -7.24 6.92 56.52 0.39 -6.85 16 5 H -0.30 -7.74 7.11 56.52 0.40 -7.33 16 6 H -0.26 -6.97 6.53 56.52 0.37 -6.60 16 7 C -0.52 -14.29 9.15 -34.44 -0.31 -14.61 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 9 C 0.00 0.09 1.83 -91.87 -0.17 -0.08 16 10 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 11 C -0.10 -1.88 5.11 -26.69 -0.14 -2.02 16 12 C -0.14 -2.01 6.08 -26.61 -0.16 -2.17 16 13 C 0.10 1.48 6.35 -3.71 -0.02 1.45 16 14 N -0.60 -11.15 2.98 -174.73 -0.52 -11.67 16 15 C 0.53 9.96 7.61 -13.04 -0.10 9.86 16 16 O -0.55 -12.25 15.68 5.17 0.08 -12.17 16 17 C -0.13 -1.88 8.98 -37.44 -0.34 -2.22 16 18 C -0.04 -0.49 9.72 -37.37 -0.36 -0.85 16 19 C 0.08 0.87 7.34 -14.70 -0.11 0.76 16 20 N -0.45 -5.32 10.12 -11.69 -0.12 -5.44 16 21 C 0.04 0.34 11.24 -19.42 -0.22 0.12 16 22 C -0.29 -2.22 11.08 29.30 0.32 -1.90 16 23 S 0.17 1.44 23.20 -107.50 -2.49 -1.05 16 24 C 0.10 2.30 5.08 -3.94 -0.02 2.28 16 25 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.93 5.30 -51.93 -0.28 0.66 16 32 H 0.14 1.79 5.49 -52.49 -0.29 1.50 16 33 H 0.15 1.93 7.53 -52.49 -0.40 1.53 16 34 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.08 2.00 2.35 -51.93 -0.12 1.87 16 37 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 314.95 15.07 4.75 4.75 Total: -1.00 -33.46 314.95 -7.82 -41.28 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.43 Total: -0.73 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.72 Total: -7.34 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.13 Total: -43.81 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.13 Total: 19.08 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.49 Total: -1.05 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.46 -7.82 -41.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347073577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.813 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds