Wall clock time and date at job start Tue Mar 31 2020 06:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99764 * 2 1 4 4 H 1.48497 * 109.46888 * 270.00159 * 3 2 1 5 5 H 1.48504 * 109.47071 * 30.00413 * 3 2 1 6 6 H 1.48496 * 109.47024 * 150.00421 * 3 2 1 7 7 C 1.37877 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00200 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99999 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.49661 * 59.92783 * 9 7 2 11 11 C 1.53040 * 109.49770 * 179.97438 * 9 7 2 12 12 C 1.53043 * 109.53487 * 181.31414 * 11 9 7 13 13 C 1.53190 * 109.31477 * 298.63222 * 12 11 9 14 14 N 1.46931 * 108.77253 * 54.63490 * 13 12 11 15 15 C 1.34783 * 120.62562 * 126.36856 * 14 13 12 16 16 O 1.21727 * 119.99391 * 174.87664 * 15 14 13 17 17 C 1.46247 * 120.00307 * 354.88252 * 15 14 13 18 18 C 1.35237 * 120.00316 * 185.18678 * 17 15 14 19 19 C 1.46400 * 120.00566 * 179.97438 * 18 17 15 20 20 N 1.30828 * 125.54554 * 359.69105 * 19 18 17 21 21 C 1.30821 * 115.81156 * 179.77865 * 20 19 18 22 22 C 1.34165 * 115.79907 * 0.51877 * 21 20 19 23 23 S 1.71056 * 109.16055 * 359.72284 * 22 21 20 24 24 C 1.46919 * 118.73976 * 306.64468 * 14 13 12 25 25 H 0.96995 * 120.00048 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46281 * 61.29364 * 11 9 7 27 27 H 1.08999 * 109.45907 * 301.33452 * 11 9 7 28 28 H 1.08998 * 109.49371 * 178.67880 * 12 11 9 29 29 H 1.09005 * 109.49642 * 58.58878 * 12 11 9 30 30 H 1.08999 * 109.58766 * 294.85246 * 13 12 11 31 31 H 1.08999 * 109.70319 * 174.48874 * 13 12 11 32 32 H 1.08002 * 120.00132 * 5.17992 * 17 15 14 33 33 H 1.08002 * 119.99552 * 359.97438 * 18 17 15 34 34 H 1.08000 * 122.09847 * 180.24241 * 21 20 19 35 35 H 1.08002 * 125.41850 * 179.72591 * 22 21 20 36 36 H 1.09005 * 109.58862 * 173.14286 * 24 14 13 37 37 H 1.09003 * 109.58921 * 293.56680 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8757 -0.6793 0.8881 11 6 4.0224 -2.6366 -0.0010 12 6 5.5525 -2.6377 0.0315 13 6 6.0864 -1.9359 -1.2212 14 7 5.4855 -0.5978 -1.3058 15 6 6.2621 0.4971 -1.4280 16 8 5.7516 1.5901 -1.5908 17 6 7.7178 0.3719 -1.3650 18 6 8.4932 1.4798 -1.3821 19 6 9.9505 1.3545 -1.3186 20 7 10.6144 0.2301 -1.2376 21 6 11.9173 0.3397 -1.1961 22 6 12.3995 1.5913 -1.2312 23 16 11.0947 2.6929 -1.3310 24 6 4.0226 -0.4754 -1.2485 25 1 -0.4850 0.8400 0.0004 26 1 3.6780 -3.1440 -0.9021 27 1 3.6402 -3.1571 0.8771 28 1 5.9151 -3.6654 0.0553 29 1 5.8979 -2.1090 0.9199 30 1 5.8183 -2.5134 -2.1059 31 1 7.1708 -1.8462 -1.1581 32 1 8.1737 -0.6053 -1.3048 33 1 8.0373 2.4570 -1.4427 34 1 12.5641 -0.5229 -1.1329 35 1 13.4450 1.8603 -1.2012 36 1 3.7456 0.5778 -1.2010 37 1 3.5827 -0.9313 -2.1355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347073577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:49 Heat of formation + Delta-G solvation = 9.626580 kcal Electronic energy + Delta-G solvation = -20628.520581 eV Core-core repulsion = 17497.275926 eV Total energy + Delta-G solvation = -3131.244655 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30540 -40.55719 -38.61260 -35.42751 -34.89515 -33.62809 -32.28880 -30.61773 -27.88621 -26.93419 -26.01242 -23.64505 -23.55565 -21.56354 -20.48966 -19.50101 -19.25540 -18.84272 -18.31916 -17.02148 -16.75023 -16.32280 -16.14551 -15.50802 -15.49521 -15.26586 -14.91024 -14.85918 -14.59105 -14.17424 -13.96636 -13.72878 -13.37974 -13.08631 -12.80851 -12.45412 -12.34301 -12.12087 -11.80565 -11.60986 -11.59236 -11.34195 -11.06063 -10.88477 -10.82842 -10.77272 -10.51334 -9.69086 -9.31880 -8.39532 -6.41430 -0.95670 0.24064 0.54584 0.75967 1.22992 1.29355 1.39602 1.83805 2.01045 2.21125 2.29677 2.97457 3.04763 3.54148 3.84170 4.05380 4.13137 4.16309 4.29790 4.34410 4.43489 4.46637 4.52826 4.63185 4.73761 4.82574 4.93492 4.97157 5.08127 5.18150 5.21932 5.25271 5.38099 5.52840 5.62577 5.69554 6.25855 6.43388 6.63979 6.67545 7.07061 7.24281 8.76626 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025667 B = 0.003862 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.635296 B = 7248.497799 C = 8122.166001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.028 3.972 3 Si 0.936 3.064 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.511 4.511 8 H 0.052 0.948 9 C 0.003 3.997 10 H 0.014 0.986 11 C -0.098 4.098 12 C -0.128 4.128 13 C 0.099 3.901 14 N -0.602 5.602 15 C 0.529 3.471 16 O -0.597 6.597 17 C -0.152 4.152 18 C -0.011 4.011 19 C 0.030 3.970 20 N -0.465 5.465 21 C 0.016 3.984 22 C -0.269 4.269 23 S 0.205 5.795 24 C 0.109 3.891 25 H 0.267 0.733 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.199 0.801 35 H 0.213 0.787 36 H 0.049 0.951 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.259 0.046 -3.114 29.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.170 4.170 3 Si 0.765 3.235 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.550 4.550 8 H 0.070 0.930 9 C -0.016 4.016 10 H 0.033 0.967 11 C -0.136 4.136 12 C -0.166 4.166 13 C -0.022 4.022 14 N -0.332 5.332 15 C 0.320 3.680 16 O -0.480 6.480 17 C -0.179 4.179 18 C -0.034 4.034 19 C -0.240 4.240 20 N -0.180 5.180 21 C -0.139 4.139 22 C -0.409 4.409 23 S 0.462 5.538 24 C -0.014 4.014 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.127 0.873 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.133 0.867 32 H 0.182 0.818 33 H 0.164 0.836 34 H 0.216 0.784 35 H 0.229 0.771 36 H 0.067 0.933 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 28.522 1.309 -3.231 28.734 hybrid contribution -0.004 0.270 0.083 0.283 sum 28.518 1.580 -3.148 28.735 Atomic orbital electron populations 1.69981 1.07506 1.27901 1.52373 1.25627 0.95202 1.01685 0.94511 0.86084 0.78286 0.80779 0.78316 1.20706 1.21890 1.19293 1.21315 0.90827 0.93260 1.49570 0.93011 1.19359 0.93926 0.95661 0.92671 0.96745 1.21388 0.95382 0.95164 1.01681 1.21952 0.94936 1.02213 0.97457 1.22210 0.99432 0.80929 0.99597 1.48358 1.06794 1.07952 1.70102 1.18922 0.88800 0.83583 0.76668 1.90778 1.76711 1.28078 1.52463 1.23092 0.90286 1.01509 1.02997 1.21489 0.87546 0.99982 0.94424 1.25915 0.98180 0.91679 1.08222 1.66997 1.08436 1.28139 1.14441 1.22154 0.89758 0.98957 1.03059 1.27057 1.07025 0.96693 1.10126 1.83898 0.96157 1.10463 1.63303 1.22052 0.78565 1.00313 1.00445 0.92323 0.92116 0.92454 0.87314 0.92297 0.89459 0.86740 0.81814 0.83646 0.78444 0.77057 0.93295 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.43 13.96 21.45 0.30 -59.13 16 2 C 0.03 1.71 5.45 84.65 0.46 2.17 16 3 Si 0.94 50.30 24.32 68.60 1.67 51.96 16 4 H -0.28 -15.30 6.92 99.48 0.69 -14.61 16 5 H -0.29 -15.26 7.11 99.48 0.71 -14.56 16 6 H -0.27 -14.33 6.53 99.48 0.65 -13.68 16 7 C -0.51 -29.22 9.15 25.60 0.23 -28.98 16 8 H 0.05 3.17 7.99 -2.91 -0.02 3.14 16 9 C 0.00 0.16 1.83 -11.60 -0.02 0.14 16 10 H 0.01 0.72 7.20 -2.39 -0.02 0.71 16 11 C -0.10 -3.57 5.11 30.62 0.16 -3.41 16 12 C -0.13 -3.36 6.08 30.67 0.19 -3.17 16 13 C 0.10 2.53 6.35 86.36 0.55 3.08 16 14 N -0.60 -22.04 2.98 -824.93 -2.46 -24.50 16 15 C 0.53 19.70 7.61 86.32 0.66 20.35 16 16 O -0.60 -27.44 15.68 -4.43 -0.07 -27.51 16 17 C -0.15 -4.14 8.98 23.66 0.21 -3.93 16 18 C -0.01 -0.28 9.72 23.70 0.23 -0.05 16 19 C 0.03 0.62 7.34 86.97 0.64 1.26 16 20 N -0.46 -9.56 10.12 -190.91 -1.93 -11.49 16 21 C 0.02 0.23 11.24 83.91 0.94 1.17 16 22 C -0.27 -2.91 11.08 66.89 0.74 -2.17 16 23 S 0.20 2.90 23.20 -56.49 -1.31 1.59 16 24 C 0.11 4.95 5.08 86.22 0.44 5.39 16 25 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 26 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.11 2.20 5.30 -2.39 -0.01 2.18 16 32 H 0.16 3.66 5.49 -2.91 -0.02 3.64 16 33 H 0.15 3.69 7.53 -2.91 -0.02 3.67 16 34 H 0.20 1.70 8.06 -2.91 -0.02 1.67 16 35 H 0.21 0.79 8.06 -2.91 -0.02 0.77 16 36 H 0.05 2.54 2.35 -2.38 -0.01 2.53 16 37 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -76.47 314.95 2.64 -73.83 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: 1.01 Total: 3.39 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 5.43 Total: -8.16 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -4.09 Total: -95.11 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.07 Total: -27.51 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 1.67 Total: 51.96 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.31 Total: 1.59 kcal Total: -76.47 2.64 -73.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347073577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.460 kcal (2) G-P(sol) polarization free energy of solvation -76.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds