Wall clock time and date at job start Tue Mar 31 2020 06:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99892 * 2 1 4 4 H 1.48499 * 109.47369 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47219 * 300.00392 * 3 2 1 6 6 H 1.48500 * 109.46945 * 59.99773 * 3 2 1 7 7 C 1.37881 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99633 * 184.70378 * 7 2 1 9 9 C 1.50698 * 119.99788 * 4.70403 * 7 2 1 10 10 C 1.53001 * 115.55249 * 93.98101 * 9 7 2 11 11 N 1.46501 * 109.47080 * 55.27544 * 10 9 7 12 12 C 1.34770 * 119.99903 * 185.02002 * 11 10 9 13 13 O 1.21617 * 119.99998 * 4.79358 * 12 11 10 14 14 C 1.47252 * 120.00075 * 184.52046 * 12 11 10 15 15 N 1.30557 * 125.54408 * 175.10660 * 14 12 11 16 16 C 1.30710 * 115.90629 * 179.97438 * 15 14 12 17 17 C 1.50700 * 122.10622 * 179.97438 * 16 15 14 18 18 C 1.52994 * 117.49854 * 163.77517 * 17 16 15 19 19 C 1.52995 * 117.50162 * 95.11239 * 17 16 15 20 20 C 1.34229 * 115.78580 * 0.02562 * 16 15 14 21 21 S 1.71079 * 109.09031 * 359.72957 * 20 16 15 22 22 C 1.53007 * 117.49776 * 239.64952 * 9 7 2 23 23 C 1.53004 * 117.49849 * 308.30739 * 9 7 2 24 24 H 0.96994 * 119.99851 * 5.00418 * 1 2 3 25 25 H 1.08994 * 109.46664 * 295.27597 * 10 9 7 26 26 H 1.08999 * 109.47096 * 175.27910 * 10 9 7 27 27 H 0.97006 * 119.99690 * 5.02086 * 11 10 9 28 28 H 1.09004 * 115.54773 * 309.44093 * 17 16 15 29 29 H 1.08996 * 117.49826 * 359.97438 * 18 17 16 30 30 H 1.09001 * 117.50252 * 145.01928 * 18 17 16 31 31 H 1.08996 * 117.49973 * 214.97987 * 19 17 16 32 32 H 1.09006 * 117.49835 * 359.97438 * 19 17 16 33 33 H 1.07998 * 125.45451 * 180.02562 * 20 16 15 34 34 H 1.08990 * 117.50016 * 215.00802 * 22 9 7 35 35 H 1.09002 * 117.49737 * 0.02562 * 22 9 7 36 36 H 1.08996 * 117.49775 * 359.97438 * 23 9 7 37 37 H 1.09002 * 117.49835 * 144.97727 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0819 -1.1956 0.0762 9 6 1.2549 -2.4969 -0.1081 10 6 1.1073 -3.0584 -1.5237 11 7 2.4312 -3.1922 -2.1366 12 6 2.5422 -3.5738 -3.4243 13 8 1.5438 -3.7226 -4.1027 14 6 3.8725 -3.8047 -4.0118 15 7 4.1029 -4.2608 -5.2132 16 6 5.3609 -4.3930 -5.5424 17 6 5.7855 -4.9076 -6.8937 18 6 7.2368 -4.6707 -7.3158 19 6 6.1080 -3.8735 -7.9741 20 6 6.2509 -4.0425 -4.6006 21 16 5.4116 -3.5037 -3.2106 22 6 1.4132 -3.4997 1.0366 23 6 0.1005 -2.7304 0.8685 24 1 -0.4849 0.8368 -0.0733 25 1 0.4970 -2.3812 -2.1213 26 1 0.6272 -4.0359 -1.4786 27 1 3.2279 -3.0061 -1.6154 28 1 5.3143 -5.8377 -7.2118 29 1 7.8845 -4.1421 -6.6163 30 1 7.7204 -5.4445 -7.9120 31 1 5.8493 -4.1233 -9.0031 32 1 6.0127 -2.8208 -7.7077 33 1 7.3248 -4.0883 -4.7055 34 1 1.4122 -4.5592 0.7812 35 1 2.0593 -3.2168 1.8677 36 1 -0.1164 -1.9419 1.5890 37 1 -0.7644 -3.2837 0.5023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347532256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:33 Heat of formation + Delta-G solvation = 59.607756 kcal Electronic energy + Delta-G solvation = -20238.204889 eV Core-core repulsion = 17109.127580 eV Total energy + Delta-G solvation = -3129.077309 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34488 -38.95256 -36.90729 -36.52197 -33.53903 -31.97267 -30.40209 -27.47037 -25.96368 -25.25655 -23.18294 -22.60774 -21.15732 -20.22289 -19.60165 -19.17261 -18.41781 -16.90179 -16.07346 -16.02706 -15.45636 -15.14795 -14.88230 -14.60621 -13.97535 -13.88305 -13.45325 -13.07483 -12.81156 -12.78836 -12.03405 -11.80292 -11.59916 -11.46070 -11.05534 -10.95434 -10.84611 -10.67978 -10.56498 -10.27995 -10.16133 -9.73028 -9.59822 -9.43138 -9.17416 -8.78809 -8.51594 -8.41722 -8.13999 -6.12330 -4.22659 0.26116 1.16923 1.58074 2.34533 3.16893 3.22653 3.32166 3.33100 3.44485 3.64511 4.22385 4.32281 4.62015 4.70084 4.84776 4.96036 5.13054 5.14996 5.21952 5.35498 5.36435 5.57411 5.80888 5.86011 5.93299 5.96837 6.27713 6.40266 6.43853 6.65696 6.74509 7.03970 7.11514 7.30933 7.52757 7.60844 7.75459 8.03211 8.27274 8.55037 8.79091 9.45137 10.94370 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020556 B = 0.004012 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.784894 B = 6977.895654 C = 7510.094729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.075 3.925 3 Si 0.887 3.113 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.014 3.986 10 C 0.163 3.837 11 N -0.688 5.688 12 C 0.582 3.418 13 O -0.513 6.513 14 C 0.016 3.984 15 N -0.400 5.400 16 C 0.087 3.913 17 C -0.084 4.084 18 C -0.171 4.171 19 C -0.163 4.163 20 C -0.275 4.275 21 S 0.189 5.811 22 C -0.214 4.214 23 C -0.131 4.131 24 H 0.261 0.739 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.401 0.599 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.181 0.819 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.931 -7.905 -8.164 17.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.129 4.129 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.013 3.987 10 C 0.041 3.959 11 N -0.338 5.338 12 C 0.362 3.638 13 O -0.389 6.389 14 C -0.261 4.261 15 N -0.116 5.116 16 C -0.050 4.050 17 C -0.104 4.104 18 C -0.209 4.209 19 C -0.201 4.201 20 C -0.416 4.416 21 S 0.445 5.555 22 C -0.252 4.252 23 C -0.169 4.169 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.236 0.764 28 H 0.140 0.860 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.199 0.801 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.817 -7.617 -7.855 16.852 hybrid contribution 1.155 0.753 -0.659 1.528 sum 13.972 -6.864 -8.514 17.743 Atomic orbital electron populations 1.70011 1.05848 1.26902 1.48115 1.24976 0.94830 0.98989 0.94133 0.86624 0.80258 0.83962 0.77721 1.19615 1.20880 1.20962 1.20345 0.92567 0.88620 1.52174 0.92149 1.19064 1.00177 0.94054 0.85376 1.21154 0.81224 0.98448 0.95122 1.45779 1.11796 1.66267 1.09943 1.16730 0.85228 0.79216 0.82606 1.90819 1.36117 1.51550 1.60419 1.27781 0.98005 1.06452 0.93907 1.66384 1.19762 1.12016 1.13388 1.19385 0.86422 1.02348 0.96893 1.20361 0.98682 1.00886 0.90497 1.23056 0.90668 1.03511 1.03648 1.23007 1.02068 0.97528 0.97486 1.26449 1.06150 1.10289 0.98730 1.84075 0.99535 1.56338 1.15582 1.23127 1.02871 0.95431 1.03724 1.22443 0.89944 1.00710 1.03835 0.92860 0.90873 0.93741 0.76412 0.86041 0.88547 0.87986 0.88059 0.88580 0.80130 0.91752 0.90288 0.88721 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.63 11.86 55.43 0.66 -22.98 16 2 C 0.07 1.94 5.41 -17.82 -0.10 1.85 16 3 Si 0.89 20.16 29.54 -169.99 -5.02 15.13 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.50 -12.45 8.31 -34.44 -0.29 -12.74 16 8 H 0.06 1.47 7.82 -52.49 -0.41 1.05 16 9 C 0.01 0.32 1.74 -155.66 -0.27 0.05 16 10 C 0.16 3.55 5.59 -4.04 -0.02 3.52 16 11 N -0.69 -13.36 5.35 -61.44 -0.33 -13.69 16 12 C 0.58 11.63 7.80 -12.60 -0.10 11.53 16 13 O -0.51 -12.06 17.05 5.26 0.09 -11.97 16 14 C 0.02 0.27 7.46 -14.43 -0.11 0.16 16 15 N -0.40 -6.85 10.57 -7.69 -0.08 -6.93 16 16 C 0.09 1.17 6.35 -84.48 -0.54 0.64 16 17 C -0.08 -0.89 6.28 -91.78 -0.58 -1.46 16 18 C -0.17 -1.29 9.90 -26.70 -0.26 -1.56 16 19 C -0.16 -1.48 10.24 -26.70 -0.27 -1.75 16 20 C -0.28 -3.11 10.24 29.32 0.30 -2.81 16 21 S 0.19 2.38 22.32 -107.50 -2.40 -0.02 16 22 C -0.21 -4.34 9.93 -26.69 -0.26 -4.60 16 23 C -0.13 -2.94 8.87 -26.69 -0.24 -3.18 16 24 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 25 H 0.07 1.79 8.10 -51.93 -0.42 1.37 16 26 H 0.04 0.92 8.10 -51.93 -0.42 0.50 16 27 H 0.40 7.11 7.31 -40.82 -0.30 6.81 16 28 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.10 0.65 6.72 -51.93 -0.35 0.30 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.18 1.44 6.85 -52.49 -0.36 1.08 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.09 2.32 7.59 -51.93 -0.39 1.92 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -29.80 333.92 -9.53 -39.33 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.75 Total: 6.44 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -2.73 Total: -10.35 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.25 Total: -43.60 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.40 Total: -0.02 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.80 -9.53 -39.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347532256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.939 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds