Wall clock time and date at job start Tue Mar 31 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99892 * 2 1 4 4 H 1.48499 * 109.47369 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47219 * 300.00392 * 3 2 1 6 6 H 1.48500 * 109.46945 * 59.99773 * 3 2 1 7 7 C 1.37881 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99633 * 184.70378 * 7 2 1 9 9 C 1.50698 * 119.99788 * 4.70403 * 7 2 1 10 10 C 1.53001 * 115.55249 * 93.98101 * 9 7 2 11 11 N 1.46501 * 109.47080 * 55.27544 * 10 9 7 12 12 C 1.34770 * 119.99903 * 185.02002 * 11 10 9 13 13 O 1.21617 * 119.99998 * 4.79358 * 12 11 10 14 14 C 1.47252 * 120.00075 * 184.52046 * 12 11 10 15 15 N 1.30557 * 125.54408 * 175.10660 * 14 12 11 16 16 C 1.30710 * 115.90629 * 179.97438 * 15 14 12 17 17 C 1.50700 * 122.10622 * 179.97438 * 16 15 14 18 18 C 1.52994 * 117.49854 * 163.77517 * 17 16 15 19 19 C 1.52995 * 117.50162 * 95.11239 * 17 16 15 20 20 C 1.34229 * 115.78580 * 0.02562 * 16 15 14 21 21 S 1.71079 * 109.09031 * 359.72957 * 20 16 15 22 22 C 1.53007 * 117.49776 * 239.64952 * 9 7 2 23 23 C 1.53004 * 117.49849 * 308.30739 * 9 7 2 24 24 H 0.96994 * 119.99851 * 5.00418 * 1 2 3 25 25 H 1.08994 * 109.46664 * 295.27597 * 10 9 7 26 26 H 1.08999 * 109.47096 * 175.27910 * 10 9 7 27 27 H 0.97006 * 119.99690 * 5.02086 * 11 10 9 28 28 H 1.09004 * 115.54773 * 309.44093 * 17 16 15 29 29 H 1.08996 * 117.49826 * 359.97438 * 18 17 16 30 30 H 1.09001 * 117.50252 * 145.01928 * 18 17 16 31 31 H 1.08996 * 117.49973 * 214.97987 * 19 17 16 32 32 H 1.09006 * 117.49835 * 359.97438 * 19 17 16 33 33 H 1.07998 * 125.45451 * 180.02562 * 20 16 15 34 34 H 1.08990 * 117.50016 * 215.00802 * 22 9 7 35 35 H 1.09002 * 117.49737 * 0.02562 * 22 9 7 36 36 H 1.08996 * 117.49775 * 359.97438 * 23 9 7 37 37 H 1.09002 * 117.49835 * 144.97727 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0819 -1.1956 0.0762 9 6 1.2549 -2.4969 -0.1081 10 6 1.1073 -3.0584 -1.5237 11 7 2.4312 -3.1922 -2.1366 12 6 2.5422 -3.5738 -3.4243 13 8 1.5438 -3.7226 -4.1027 14 6 3.8725 -3.8047 -4.0118 15 7 4.1029 -4.2608 -5.2132 16 6 5.3609 -4.3930 -5.5424 17 6 5.7855 -4.9076 -6.8937 18 6 7.2368 -4.6707 -7.3158 19 6 6.1080 -3.8735 -7.9741 20 6 6.2509 -4.0425 -4.6006 21 16 5.4116 -3.5037 -3.2106 22 6 1.4132 -3.4997 1.0366 23 6 0.1005 -2.7304 0.8685 24 1 -0.4849 0.8368 -0.0733 25 1 0.4970 -2.3812 -2.1213 26 1 0.6272 -4.0359 -1.4786 27 1 3.2279 -3.0061 -1.6154 28 1 5.3143 -5.8377 -7.2118 29 1 7.8845 -4.1421 -6.6163 30 1 7.7204 -5.4445 -7.9120 31 1 5.8493 -4.1233 -9.0031 32 1 6.0127 -2.8208 -7.7077 33 1 7.3248 -4.0883 -4.7055 34 1 1.4122 -4.5592 0.7812 35 1 2.0593 -3.2168 1.8677 36 1 -0.1164 -1.9419 1.5890 37 1 -0.7644 -3.2837 0.5023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347532256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:32 Heat of formation + Delta-G solvation = 41.099434 kcal Electronic energy + Delta-G solvation = -20239.007470 eV Core-core repulsion = 17109.127580 eV Total energy + Delta-G solvation = -3129.879890 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.47824 -40.41914 -38.49191 -37.49217 -35.20756 -33.91374 -31.48979 -28.92828 -27.59649 -26.75512 -24.33307 -23.23234 -22.86916 -21.68503 -21.19092 -20.27219 -19.65020 -18.34481 -17.70766 -17.02327 -16.86547 -16.59026 -16.53561 -15.90928 -15.47148 -15.20804 -14.64420 -14.55760 -14.41483 -13.82939 -13.65738 -13.42686 -12.93154 -12.83390 -12.44630 -12.33315 -12.30945 -11.97333 -11.70375 -11.54682 -11.38698 -11.31259 -11.02951 -10.78977 -10.77225 -10.38694 -10.22430 -9.93593 -9.68416 -8.09001 -6.22937 -0.86321 0.07781 0.55723 1.20372 1.41694 1.45901 1.54176 1.81365 2.06505 2.43352 2.84532 3.18069 3.28470 3.52721 3.72765 3.93821 3.99724 4.10966 4.23233 4.26155 4.33854 4.52646 4.65193 4.69778 4.77062 4.86744 4.93130 5.04075 5.06704 5.15616 5.25045 5.32594 5.37923 5.57613 5.75338 5.79572 6.33724 6.36326 6.64479 6.85131 7.02925 7.46856 8.97434 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020556 B = 0.004012 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.784894 B = 6977.895654 C = 7510.094729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.025 3.975 3 Si 0.943 3.057 4 H -0.256 1.256 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.502 4.502 8 H 0.067 0.933 9 C -0.007 4.007 10 C 0.176 3.824 11 N -0.681 5.681 12 C 0.583 3.417 13 O -0.563 6.563 14 C -0.041 4.041 15 N -0.429 5.429 16 C 0.066 3.934 17 C -0.109 4.109 18 C -0.140 4.140 19 C -0.172 4.172 20 C -0.248 4.248 21 S 0.255 5.745 22 C -0.180 4.180 23 C -0.143 4.143 24 H 0.258 0.742 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.410 0.590 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.224 0.776 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.843 -8.586 -8.184 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.175 4.175 3 Si 0.769 3.231 4 H -0.180 1.180 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.540 4.540 8 H 0.085 0.915 9 C -0.008 4.008 10 C 0.052 3.948 11 N -0.332 5.332 12 C 0.366 3.634 13 O -0.443 6.443 14 C -0.315 4.315 15 N -0.147 5.147 16 C -0.072 4.072 17 C -0.130 4.130 18 C -0.177 4.177 19 C -0.210 4.210 20 C -0.389 4.389 21 S 0.510 5.490 22 C -0.218 4.218 23 C -0.181 4.181 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.247 0.753 28 H 0.135 0.865 29 H 0.129 0.871 30 H 0.142 0.858 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.240 0.760 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.762 -8.301 -7.847 20.284 hybrid contribution 0.066 0.927 -0.676 1.149 sum 16.828 -7.374 -8.523 20.253 Atomic orbital electron populations 1.70136 1.07157 1.27213 1.49813 1.25681 0.95478 1.01992 0.94389 0.85740 0.79926 0.80425 0.77017 1.18006 1.21736 1.21091 1.20691 0.93043 0.89489 1.50746 0.91454 1.19109 1.00784 0.94640 0.86255 1.20813 0.82048 0.97796 0.94125 1.45592 1.11201 1.66285 1.10084 1.17124 0.86293 0.77815 0.82143 1.90770 1.38424 1.53617 1.61454 1.27051 0.98501 1.10616 0.95314 1.66350 1.22325 1.12061 1.13943 1.19796 0.85566 1.03198 0.98626 1.20450 1.01601 1.01193 0.89754 1.23212 0.89044 1.02844 1.02646 1.23071 1.03460 0.96729 0.97690 1.27029 1.07884 1.06818 0.97184 1.83777 0.96096 1.54387 1.14718 1.23114 1.00531 0.96163 1.01944 1.22339 0.91136 1.00998 1.03653 0.93309 0.94703 0.92906 0.75316 0.86502 0.87053 0.85817 0.87077 0.89717 0.75959 0.89121 0.89670 0.91250 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.35 11.86 21.45 0.25 -50.10 16 2 C 0.03 1.32 5.41 84.65 0.46 1.78 16 3 Si 0.94 41.40 29.54 68.60 2.03 43.43 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.50 -24.86 8.31 25.60 0.21 -24.65 16 8 H 0.07 3.17 7.82 -2.91 -0.02 3.14 16 9 C -0.01 -0.32 1.74 -52.92 -0.09 -0.42 16 10 C 0.18 7.82 5.59 86.38 0.48 8.30 16 11 N -0.68 -26.70 5.35 -466.56 -2.50 -29.19 16 12 C 0.58 24.02 7.80 86.61 0.68 24.70 16 13 O -0.56 -27.92 17.05 -4.09 -0.07 -27.99 16 14 C -0.04 -1.39 7.46 87.25 0.65 -0.74 16 15 N -0.43 -14.74 10.57 -178.24 -1.88 -16.62 16 16 C 0.07 1.65 6.35 41.81 0.27 1.92 16 17 C -0.11 -2.11 6.28 -11.54 -0.07 -2.18 16 18 C -0.14 -1.57 9.90 30.62 0.30 -1.27 16 19 C -0.17 -2.78 10.24 30.62 0.31 -2.47 16 20 C -0.25 -4.68 10.24 66.90 0.68 -4.00 16 21 S 0.26 5.75 22.32 -56.49 -1.26 4.49 16 22 C -0.18 -6.99 9.93 30.62 0.30 -6.69 16 23 C -0.14 -6.45 8.87 30.62 0.27 -6.18 16 24 H 0.26 13.89 8.32 -92.71 -0.77 13.12 16 25 H 0.03 1.80 8.10 -2.39 -0.02 1.78 16 26 H 0.05 2.23 8.10 -2.39 -0.02 2.21 16 27 H 0.41 14.20 7.31 -92.70 -0.68 13.53 16 28 H 0.12 2.29 8.14 -2.39 -0.02 2.28 16 29 H 0.11 0.91 6.72 -2.39 -0.02 0.90 16 30 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.22 2.20 6.85 -2.91 -0.02 2.18 16 34 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 35 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.07 3.47 7.59 -2.39 -0.02 3.45 16 37 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -67.56 333.92 1.45 -66.11 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.42 Total: 21.76 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 4.46 Total: -11.89 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -4.13 Total: -95.91 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.07 Total: -27.99 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.26 Total: 4.49 kcal Total: -67.56 1.45 -66.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347532256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.209 kcal (2) G-P(sol) polarization free energy of solvation -67.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds