Wall clock time and date at job start Tue Mar 31 2020 06:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97758 * 124.71469 * 10 9 7 12 12 C 1.35229 * 107.86711 * 179.83522 * 11 10 9 13 13 C 1.40431 * 107.86689 * 0.42326 * 12 11 10 14 14 N 1.40059 * 125.97653 * 179.73519 * 13 12 11 15 15 C 1.34783 * 119.99917 * 359.97438 * 14 13 12 16 16 O 1.21516 * 119.99840 * 359.97438 * 15 14 13 17 17 C 1.48299 * 119.99885 * 179.97438 * 15 14 13 18 18 C 1.42285 * 126.93598 * 179.97438 * 17 15 14 19 19 C 1.35307 * 103.91560 * 180.02562 * 18 17 15 20 20 C 1.50702 * 126.66080 * 179.97438 * 19 18 17 21 21 O 1.42906 * 109.47278 * 89.99814 * 20 19 18 22 22 O 1.34016 * 106.67960 * 359.97438 * 19 18 17 23 23 N 1.20910 * 111.84402 * 359.71203 * 22 19 18 24 24 N 1.31239 * 108.04544 * 359.74026 * 13 12 11 25 25 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 27 27 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 28 28 H 1.07998 * 126.06297 * 359.97124 * 11 10 9 29 29 H 1.07997 * 126.06437 * 180.15261 * 12 11 10 30 30 H 0.96998 * 120.00421 * 179.97438 * 14 13 12 31 31 H 1.07995 * 128.04546 * 359.97438 * 18 17 15 32 32 H 1.09001 * 109.47393 * 209.99489 * 20 19 18 33 33 H 1.08997 * 109.47323 * 329.99874 * 20 19 18 34 34 H 0.96703 * 114.00120 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8836 12 6 3.2624 -5.4441 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9596 -5.4620 -1.3038 15 6 5.5260 -6.6029 -0.8630 16 8 5.0888 -7.1551 0.1272 17 6 6.6827 -7.1841 -1.5865 18 6 7.3896 -8.3732 -1.2536 19 6 8.3426 -8.4637 -2.2098 20 6 9.3846 -9.5444 -2.3423 21 8 8.8727 -10.6027 -3.1548 22 8 8.1801 -7.4058 -3.0162 23 7 7.2561 -6.7098 -2.6646 24 7 3.2287 -3.8132 -0.9445 25 1 -0.4850 -0.8400 0.0004 26 1 0.6281 -2.5591 0.8866 27 1 0.6207 -2.5548 -0.8933 28 1 1.5912 -4.7503 1.7305 29 1 3.5577 -6.3465 1.0449 30 1 5.3088 -5.0210 -2.0940 31 1 7.2083 -9.0465 -0.4289 32 1 10.2801 -9.1309 -2.8062 33 1 9.6332 -9.9325 -1.3546 34 1 9.4914 -11.3348 -3.2829 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001444486915.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:42 Heat of formation + Delta-G solvation = 68.020040 kcal Electronic energy + Delta-G solvation = -21693.726332 eV Core-core repulsion = 18018.720593 eV Total energy + Delta-G solvation = -3675.005739 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.47588 -40.84087 -39.35384 -37.59339 -35.04446 -34.40686 -33.70907 -32.76191 -30.90442 -29.46989 -27.20656 -26.69326 -25.16594 -23.26482 -22.83667 -21.42498 -20.42243 -19.50361 -18.59384 -18.07368 -17.62699 -17.22103 -17.00532 -16.62406 -15.49451 -15.35713 -15.22017 -14.93510 -14.28093 -14.04884 -13.89381 -13.80108 -13.24605 -12.64666 -12.52493 -12.33194 -12.05457 -11.89949 -11.19423 -10.88910 -10.80493 -10.78026 -10.57926 -10.34131 -10.18146 -10.07730 -9.89599 -9.03635 -8.59440 -8.29604 -7.61996 -6.59945 -4.34081 0.69972 1.18914 2.36437 2.46951 2.52973 2.90320 3.36137 3.40485 3.43043 3.57559 3.60948 3.67518 3.90662 4.21422 4.39742 4.42790 4.57812 4.68188 4.91622 5.03446 5.13827 5.36942 5.45629 5.63254 6.04324 6.31012 6.39551 6.52322 6.71176 6.92262 7.17704 7.32643 7.59346 7.67427 7.77450 7.95292 8.32230 8.46112 8.59255 9.34085 10.77853 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.032392 B = 0.002740 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.205209 B =10215.755606 C =10826.192551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.609 4.609 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.314 5.314 11 C 0.053 3.947 12 C -0.284 4.284 13 C 0.256 3.744 14 N -0.614 5.614 15 C 0.606 3.394 16 O -0.498 6.498 17 C -0.022 4.022 18 C -0.151 4.151 19 C -0.043 4.043 20 C 0.161 3.839 21 O -0.565 6.565 22 O 0.136 5.864 23 N -0.321 5.321 24 N -0.295 5.295 25 H 0.267 0.733 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.171 0.829 29 H 0.162 0.838 30 H 0.418 0.582 31 H 0.186 0.814 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.543 -20.308 -2.886 27.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.096 5.096 11 C -0.097 4.097 12 C -0.315 4.315 13 C 0.003 3.997 14 N -0.261 5.261 15 C 0.389 3.611 16 O -0.369 6.369 17 C -0.181 4.181 18 C -0.173 4.173 19 C -0.106 4.106 20 C 0.083 3.917 21 O -0.372 6.372 22 O 0.057 5.943 23 N -0.019 5.019 24 N -0.126 5.126 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.188 0.812 29 H 0.180 0.820 30 H 0.254 0.746 31 H 0.203 0.797 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 17.039 -16.501 -3.730 24.011 hybrid contribution 0.794 -2.966 0.754 3.162 sum 17.833 -19.467 -2.976 26.568 Atomic orbital electron populations 1.70825 1.06772 1.30463 1.45942 1.25934 0.96315 1.02833 0.93093 0.83381 0.74713 0.74291 0.76972 1.21184 1.21221 1.20674 1.22127 0.95426 0.90385 1.56743 0.91779 1.19806 0.86275 0.82780 0.98124 1.48850 1.23183 1.19516 1.18047 1.22577 1.00372 0.90011 0.96702 1.21523 1.02242 1.06328 1.01398 1.18999 0.91405 0.94524 0.94803 1.42150 1.29616 1.24104 1.30215 1.16643 0.80881 0.80029 0.83504 1.90753 1.61386 1.60287 1.24474 1.23313 1.01057 0.97647 0.96102 1.22479 0.94640 0.97687 1.02479 1.24027 1.01402 0.92485 0.92701 1.20259 0.90884 0.84025 0.96551 1.86552 1.46002 1.32282 1.72386 1.84798 1.37399 1.27822 1.44330 1.74245 0.99064 1.15703 1.12859 1.77399 1.03337 1.15903 1.15914 0.92240 0.93470 0.94623 0.81221 0.82033 0.74583 0.79668 0.90545 0.89441 0.75867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 13.65 55.43 0.76 -25.69 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 25.20 29.90 -169.99 -5.08 20.11 16 4 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.61 -17.26 9.24 -34.44 -0.32 -17.58 16 8 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.25 6.32 5.57 -5.19 -0.03 6.29 16 10 N -0.31 -7.43 3.67 -62.56 -0.23 -7.66 16 11 C 0.05 1.06 11.43 -17.24 -0.20 0.87 16 12 C -0.28 -5.67 9.60 -39.83 -0.38 -6.05 16 13 C 0.26 5.34 8.11 -154.46 -1.25 4.09 16 14 N -0.61 -10.64 5.44 -11.86 -0.06 -10.70 16 15 C 0.61 9.72 7.81 -12.12 -0.09 9.62 16 16 O -0.50 -8.81 14.08 5.35 0.08 -8.74 16 17 C -0.02 -0.29 7.19 -82.53 -0.59 -0.89 16 18 C -0.15 -1.50 10.92 -39.07 -0.43 -1.93 16 19 C -0.04 -0.36 7.10 -35.35 -0.25 -0.61 16 20 C 0.16 0.65 7.60 36.01 0.27 0.92 16 21 O -0.56 -2.93 13.64 -35.23 -0.48 -3.42 16 22 O 0.14 1.44 11.18 17.24 0.19 1.63 16 23 N -0.32 -4.08 11.84 33.29 0.39 -3.69 16 24 N -0.29 -7.03 12.42 31.43 0.39 -6.64 16 25 H 0.27 7.63 7.22 -40.82 -0.29 7.34 16 26 H 0.05 1.15 7.94 -51.93 -0.41 0.74 16 27 H 0.04 0.94 8.00 -51.93 -0.42 0.53 16 28 H 0.17 2.73 8.06 -52.49 -0.42 2.30 16 29 H 0.16 3.06 5.91 -52.49 -0.31 2.75 16 30 H 0.42 6.55 8.58 -40.82 -0.35 6.20 16 31 H 0.19 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.39 -0.08 9.12 45.56 0.42 0.33 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -35.82 314.18 -4.95 -40.76 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -2.26 Total: 4.00 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -3.37 Total: -4.72 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 1.25 Total: -54.38 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.21 Total: -10.52 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.82 -4.95 -40.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001444486915.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.783 kcal (2) G-P(sol) polarization free energy of solvation -35.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds