Wall clock time and date at job start Tue Mar 31 2020 06:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97758 * 124.71469 * 10 9 7 12 12 C 1.35229 * 107.86711 * 179.83522 * 11 10 9 13 13 C 1.40431 * 107.86689 * 0.42326 * 12 11 10 14 14 N 1.40059 * 125.97653 * 179.73519 * 13 12 11 15 15 C 1.34783 * 119.99917 * 359.97438 * 14 13 12 16 16 O 1.21516 * 119.99840 * 359.97438 * 15 14 13 17 17 C 1.48299 * 119.99885 * 179.97438 * 15 14 13 18 18 C 1.42285 * 126.93598 * 179.97438 * 17 15 14 19 19 C 1.35307 * 103.91560 * 180.02562 * 18 17 15 20 20 C 1.50702 * 126.66080 * 179.97438 * 19 18 17 21 21 O 1.42906 * 109.47278 * 89.99814 * 20 19 18 22 22 O 1.34016 * 106.67960 * 359.97438 * 19 18 17 23 23 N 1.20910 * 111.84402 * 359.71203 * 22 19 18 24 24 N 1.31239 * 108.04544 * 359.74026 * 13 12 11 25 25 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 27 27 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 28 28 H 1.07998 * 126.06297 * 359.97124 * 11 10 9 29 29 H 1.07997 * 126.06437 * 180.15261 * 12 11 10 30 30 H 0.96998 * 120.00421 * 179.97438 * 14 13 12 31 31 H 1.07995 * 128.04546 * 359.97438 * 18 17 15 32 32 H 1.09001 * 109.47393 * 209.99489 * 20 19 18 33 33 H 1.08997 * 109.47323 * 329.99874 * 20 19 18 34 34 H 0.96703 * 114.00120 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8836 12 6 3.2624 -5.4441 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9596 -5.4620 -1.3038 15 6 5.5260 -6.6029 -0.8630 16 8 5.0888 -7.1551 0.1272 17 6 6.6827 -7.1841 -1.5865 18 6 7.3896 -8.3732 -1.2536 19 6 8.3426 -8.4637 -2.2098 20 6 9.3846 -9.5444 -2.3423 21 8 8.8727 -10.6027 -3.1548 22 8 8.1801 -7.4058 -3.0162 23 7 7.2561 -6.7098 -2.6646 24 7 3.2287 -3.8132 -0.9445 25 1 -0.4850 -0.8400 0.0004 26 1 0.6281 -2.5591 0.8866 27 1 0.6207 -2.5548 -0.8933 28 1 1.5912 -4.7503 1.7305 29 1 3.5577 -6.3465 1.0449 30 1 5.3088 -5.0210 -2.0940 31 1 7.2083 -9.0465 -0.4289 32 1 10.2801 -9.1309 -2.8062 33 1 9.6332 -9.9325 -1.3546 34 1 9.4914 -11.3348 -3.2829 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001444486915.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:41 Heat of formation + Delta-G solvation = 39.972053 kcal Electronic energy + Delta-G solvation = -21694.942584 eV Core-core repulsion = 18018.720593 eV Total energy + Delta-G solvation = -3676.221991 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.35317 -42.43662 -40.76814 -37.91074 -36.62053 -35.72548 -35.22440 -33.56151 -32.68457 -31.14074 -28.49938 -27.69416 -26.51974 -24.94444 -23.98351 -22.82631 -21.99019 -20.84746 -19.30095 -19.26121 -18.98047 -18.24269 -18.13041 -18.00378 -17.04908 -16.66039 -16.06155 -15.87683 -15.72288 -15.62101 -15.28188 -14.99527 -14.48756 -14.26022 -14.02661 -13.79215 -13.28455 -13.10554 -12.80785 -12.64220 -12.23426 -12.00442 -11.87049 -11.73849 -11.44739 -11.06311 -11.02714 -10.81882 -10.71580 -9.97163 -9.34731 -8.81748 -6.59088 -0.25927 0.38122 0.93834 1.02361 1.48308 1.53384 1.56290 1.75779 1.78470 2.02473 2.11701 2.45592 2.62547 2.98176 3.18621 3.66533 3.72155 3.85513 3.95273 4.05022 4.14213 4.46689 4.53605 4.58438 4.60833 4.71749 4.72391 4.78325 4.91086 5.50017 5.64507 5.85003 5.91316 6.21501 6.37455 6.55808 6.80069 6.84116 6.92222 7.16072 8.55558 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.032392 B = 0.002740 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.205209 B =10215.755606 C =10826.192551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.018 4.018 3 Si 1.122 2.878 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.623 4.623 8 H 0.043 0.957 9 C 0.258 3.742 10 N -0.339 5.339 11 C 0.062 3.938 12 C -0.287 4.287 13 C 0.262 3.738 14 N -0.615 5.615 15 C 0.610 3.390 16 O -0.515 6.515 17 C -0.046 4.046 18 C -0.157 4.157 19 C -0.028 4.028 20 C 0.161 3.839 21 O -0.591 6.591 22 O 0.143 5.857 23 N -0.340 5.340 24 N -0.343 5.343 25 H 0.262 0.738 26 H 0.059 0.941 27 H 0.018 0.982 28 H 0.210 0.790 29 H 0.175 0.825 30 H 0.423 0.577 31 H 0.205 0.795 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.562 -21.754 -2.443 30.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.218 4.218 3 Si 0.943 3.057 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.661 4.661 8 H 0.062 0.938 9 C 0.139 3.861 10 N -0.121 5.121 11 C -0.086 4.086 12 C -0.318 4.318 13 C 0.008 3.992 14 N -0.263 5.263 15 C 0.396 3.604 16 O -0.388 6.388 17 C -0.203 4.203 18 C -0.179 4.179 19 C -0.091 4.091 20 C 0.083 3.917 21 O -0.403 6.403 22 O 0.061 5.939 23 N -0.037 5.037 24 N -0.173 5.173 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.226 0.774 29 H 0.193 0.807 30 H 0.260 0.740 31 H 0.222 0.778 32 H 0.120 0.880 33 H 0.137 0.863 34 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 19.069 -17.991 -3.284 26.421 hybrid contribution 0.298 -2.722 0.567 2.796 sum 19.367 -20.713 -2.717 28.487 Atomic orbital electron populations 1.70917 1.07375 1.30250 1.47235 1.27268 0.96462 1.06038 0.92036 0.82848 0.73761 0.71014 0.78107 1.19161 1.20803 1.19940 1.22295 0.94611 0.92174 1.57017 0.93848 1.19488 0.86338 0.82629 0.97659 1.48649 1.23738 1.20258 1.19477 1.23260 1.00399 0.88376 0.96601 1.21754 1.02175 1.06709 1.01189 1.19338 0.91441 0.93596 0.94848 1.42296 1.28982 1.24674 1.30386 1.17013 0.81075 0.79118 0.83234 1.90715 1.62155 1.60590 1.25317 1.23076 1.01040 0.99236 0.96969 1.22763 0.94633 0.96897 1.03656 1.24885 1.01178 0.92094 0.90974 1.20609 0.89683 0.82858 0.98551 1.86473 1.47728 1.33374 1.72720 1.84769 1.36413 1.28316 1.44424 1.74250 0.99803 1.16665 1.12975 1.77309 1.04720 1.17888 1.17424 0.92868 0.92292 0.96418 0.77380 0.80749 0.73955 0.77842 0.88038 0.86277 0.73193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.17 13.65 21.45 0.29 -53.88 16 2 C -0.02 -1.03 5.46 84.65 0.46 -0.57 16 3 Si 1.12 50.49 29.90 68.60 2.05 52.55 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.62 -35.97 9.24 25.60 0.24 -35.73 16 8 H 0.04 2.64 7.81 -2.91 -0.02 2.62 16 9 C 0.26 13.40 5.57 85.64 0.48 13.88 16 10 N -0.34 -16.25 3.67 -351.84 -1.29 -17.54 16 11 C 0.06 2.43 11.43 83.52 0.95 3.39 16 12 C -0.29 -11.33 9.60 22.11 0.21 -11.12 16 13 C 0.26 11.07 8.11 133.36 1.08 12.15 16 14 N -0.62 -21.61 5.44 -309.73 -1.69 -23.30 16 15 C 0.61 19.49 7.81 86.92 0.68 20.17 16 16 O -0.52 -17.97 14.08 -3.77 -0.05 -18.02 16 17 C -0.05 -1.18 7.19 42.95 0.31 -0.87 16 18 C -0.16 -2.85 10.92 22.60 0.25 -2.60 16 19 C -0.03 -0.40 7.10 25.01 0.18 -0.22 16 20 C 0.16 0.69 7.60 71.24 0.54 1.23 16 21 O -0.59 -4.28 13.64 -148.98 -2.03 -6.31 16 22 O 0.14 2.81 11.18 71.88 0.80 3.61 16 23 N -0.34 -8.48 11.84 -49.51 -0.59 -9.06 16 24 N -0.34 -16.74 12.42 -54.49 -0.68 -17.42 16 25 H 0.26 15.18 7.22 -92.71 -0.67 14.51 16 26 H 0.06 2.90 7.94 -2.39 -0.02 2.88 16 27 H 0.02 0.98 8.00 -2.39 -0.02 0.96 16 28 H 0.21 6.24 8.06 -2.91 -0.02 6.22 16 29 H 0.18 6.41 5.91 -2.91 -0.02 6.40 16 30 H 0.42 13.66 8.58 -92.71 -0.80 12.87 16 31 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.41 -1.52 9.12 -74.06 -0.68 -2.19 16 Total: -1.00 -78.38 314.18 2.02 -76.36 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -0.18 Total: 13.33 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 5.38 Total: -0.30 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -3.95 Total: -121.21 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -1.28 Total: -20.73 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.05 Total: 52.55 kcal Total: -78.38 2.02 -76.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001444486915.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.333 kcal (2) G-P(sol) polarization free energy of solvation -78.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds