Wall clock time and date at job start Tue Mar 31 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39687 * 120.11693 * 14.60542 * 3 2 1 5 5 C 1.37976 * 119.99138 * 179.71366 * 4 3 2 6 6 C 1.38247 * 120.23569 * 0.58109 * 5 4 3 7 7 C 1.38993 * 120.22853 * 359.67429 * 6 5 4 8 8 N 1.39832 * 119.99700 * 180.02562 * 7 6 5 9 9 C 1.34779 * 120.00044 * 213.19513 * 8 7 6 10 10 O 1.21634 * 119.99834 * 5.05857 * 9 8 7 11 11 C 1.47384 * 119.99961 * 185.05576 * 9 8 7 12 12 C 1.39246 * 120.28949 * 5.75215 * 11 9 8 13 13 C 1.38200 * 120.09534 * 179.97438 * 12 11 9 14 14 C 1.38844 * 120.67584 * 0.02562 * 13 12 11 15 15 C 1.37589 * 120.57744 * 359.97438 * 14 13 12 16 16 C 1.40706 * 119.88158 * 359.72435 * 15 14 13 17 17 C 1.40877 * 120.33186 * 180.29753 * 16 15 14 18 18 H 1.08003 * 120.00001 * 213.89044 * 17 16 15 19 19 C 1.40273 * 119.99645 * 33.88796 * 17 16 15 20 20 N 1.30623 * 120.00323 * 9.20780 * 19 17 16 21 21 Si 1.86806 * 119.99505 * 189.20664 * 19 17 16 22 22 H 1.48497 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.46811 * 120.00626 * 21 19 17 24 24 H 1.48499 * 109.46820 * 239.99690 * 21 19 17 25 25 C 1.38660 * 120.00004 * 0.04198 * 7 6 5 26 26 H 1.08005 * 120.00064 * 359.97438 * 4 3 2 27 27 H 1.08005 * 119.87886 * 180.25480 * 5 4 3 28 28 H 1.07997 * 119.88657 * 179.69121 * 6 5 4 29 29 H 0.96996 * 120.00224 * 33.19427 * 8 7 6 30 30 H 1.08008 * 119.95144 * 0.02590 * 12 11 9 31 31 H 1.07993 * 119.65978 * 179.97438 * 13 12 11 32 32 H 1.08002 * 119.71177 * 179.97438 * 14 13 12 33 33 H 1.08000 * 120.05877 * 180.02562 * 15 14 13 34 34 H 0.96996 * 119.99776 * 180.02562 * 20 19 17 35 35 H 1.08007 * 120.11046 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -1.1683 -0.3047 5 6 4.6492 -1.1633 -0.3097 6 6 5.3422 -0.0072 -0.0022 7 6 4.6539 1.1599 0.3075 8 7 5.3598 2.3265 0.6173 9 6 4.8568 3.2014 1.5107 10 8 3.8360 2.9338 2.1155 11 6 5.5437 4.4823 1.7548 12 6 6.6433 4.8479 0.9826 13 6 7.2840 6.0502 1.2146 14 6 6.8438 6.9059 2.2154 15 6 5.7601 6.5724 2.9949 16 6 5.0860 5.3571 2.7751 17 6 3.9716 5.0090 3.5635 18 1 3.7882 3.9742 3.8123 19 6 3.1002 6.0065 4.0253 20 7 3.2138 7.2297 3.5813 21 14 1.7773 5.5855 5.2751 22 1 1.8582 4.1421 5.6144 23 1 1.9807 6.3955 6.5031 24 1 0.4408 5.8844 4.7010 25 6 3.2673 1.1672 0.3097 26 1 2.7317 -2.0748 -0.5404 27 1 5.1897 -2.0671 -0.5496 28 1 6.4222 -0.0110 -0.0030 29 1 6.2114 2.5062 0.1892 30 1 6.9954 4.1913 0.2007 31 1 8.1364 6.3265 0.6118 32 1 7.3564 7.8416 2.3835 33 1 5.4246 7.2446 3.7708 34 1 2.6114 7.9195 3.9010 35 1 2.7307 2.0730 0.5506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463574663.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:52 Heat of formation + Delta-G solvation = 42.782267 kcal Electronic energy + Delta-G solvation = -21538.223015 eV Core-core repulsion = 18272.972147 eV Total energy + Delta-G solvation = -3265.250868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.18488 -38.55281 -36.98662 -36.25377 -34.38878 -33.67447 -31.24675 -30.59068 -29.87791 -28.78749 -25.58883 -23.93749 -23.35748 -21.88857 -20.97071 -19.56498 -19.03731 -17.54687 -16.55618 -16.27232 -15.80592 -15.35512 -15.17496 -14.38660 -14.23292 -14.02330 -13.86433 -13.59029 -13.17610 -13.04666 -12.80656 -12.69231 -12.38961 -12.31740 -11.72147 -11.69825 -11.44672 -11.21042 -11.15444 -10.79307 -10.61389 -10.18638 -10.06059 -9.79870 -9.38356 -8.97342 -8.58022 -7.96413 -7.69728 -7.48940 -6.92359 -4.52256 0.81556 1.36603 2.19736 2.70620 2.74328 3.00606 3.05849 3.14220 3.15693 3.55681 3.82271 3.89914 3.98630 4.10093 4.55968 4.87393 5.05992 5.13328 5.43604 5.49570 5.52990 5.72842 5.85449 6.01500 6.17745 6.23305 6.33303 6.36715 6.51174 6.57863 6.82847 6.98760 7.06588 7.17204 7.33161 7.48650 7.55950 7.73337 7.83997 8.02813 8.08994 8.52676 8.68798 8.75348 9.08339 10.02137 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013443 B = 0.005421 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.318189 B = 5163.663840 C = 6905.054916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.263 3.737 3 C -0.012 4.012 4 C -0.103 4.103 5 C -0.100 4.100 6 C -0.131 4.131 7 C 0.174 3.826 8 N -0.689 5.689 9 C 0.561 3.439 10 O -0.516 6.516 11 C -0.268 4.268 12 C -0.055 4.055 13 C -0.243 4.243 14 C -0.094 4.094 15 C -0.145 4.145 16 C 0.146 3.854 17 C -0.412 4.412 18 H 0.108 0.892 19 C 0.070 3.930 20 N -0.786 5.786 21 Si 0.915 3.085 22 H -0.256 1.256 23 H -0.272 1.272 24 H -0.272 1.272 25 C -0.078 4.078 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.406 0.594 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.284 0.716 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.046 -9.640 -5.877 12.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.053 4.053 3 C -0.016 4.016 4 C -0.125 4.125 5 C -0.119 4.119 6 C -0.153 4.153 7 C 0.077 3.923 8 N -0.334 5.334 9 C 0.358 3.642 10 O -0.393 6.393 11 C -0.273 4.273 12 C -0.074 4.074 13 C -0.262 4.262 14 C -0.113 4.113 15 C -0.164 4.164 16 C 0.142 3.858 17 C -0.440 4.440 18 H 0.125 0.875 19 C -0.149 4.149 20 N -0.411 5.411 21 Si 0.739 3.261 22 H -0.179 1.179 23 H -0.197 1.197 24 H -0.198 1.198 25 C -0.101 4.101 26 H 0.146 0.854 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.243 0.757 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.440 -9.483 -5.378 11.431 hybrid contribution 0.344 0.208 0.197 0.447 sum 3.784 -9.275 -5.181 11.278 Atomic orbital electron populations 1.81206 1.12128 1.07710 1.08995 1.25701 0.92689 0.93437 0.93443 1.15828 0.84229 0.95445 1.06111 1.20997 0.94337 0.96514 1.00657 1.20774 0.93369 0.97814 0.99945 1.21144 1.00287 0.91231 1.02644 1.17625 0.90881 0.87092 0.96715 1.43878 1.24677 1.20010 1.44878 1.18642 0.84529 0.83701 0.77334 1.90715 1.24545 1.76231 1.47850 1.19261 1.04573 0.98090 1.05424 1.20633 0.94465 0.95799 0.96522 1.20297 1.04150 0.97363 1.04406 1.20831 0.96907 0.97570 0.96014 1.21386 0.95106 0.98692 1.01188 1.17465 0.90801 0.89649 0.87877 1.20281 1.05058 0.96138 1.22513 0.87463 1.26148 0.99171 0.94100 0.95529 1.69706 1.33974 1.02309 1.35091 0.86123 0.79769 0.80476 0.79752 1.17889 1.19694 1.19762 1.21338 0.93173 0.98332 0.97298 0.85398 0.84989 0.85197 0.75674 0.89154 0.88920 0.88932 0.86337 0.90521 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.31 18.54 41.84 0.78 -6.53 16 2 C 0.26 4.03 15.33 -22.47 -0.34 3.68 16 3 C -0.01 -0.17 5.73 -106.96 -0.61 -0.78 16 4 C -0.10 -1.08 9.75 -39.14 -0.38 -1.46 16 5 C -0.10 -0.92 10.02 -39.67 -0.40 -1.32 16 6 C -0.13 -1.41 9.95 -39.30 -0.39 -1.81 16 7 C 0.17 2.51 6.28 -83.77 -0.53 1.99 16 8 N -0.69 -10.95 5.27 -10.88 -0.06 -11.01 16 9 C 0.56 11.84 7.46 -12.54 -0.09 11.75 16 10 O -0.52 -12.44 11.23 5.25 0.06 -12.38 16 11 C -0.27 -6.07 5.92 -104.37 -0.62 -6.69 16 12 C -0.06 -1.08 9.50 -39.22 -0.37 -1.45 16 13 C -0.24 -4.80 10.03 -39.37 -0.39 -5.19 16 14 C -0.09 -2.00 10.01 -39.59 -0.40 -2.40 16 15 C -0.14 -3.48 8.62 -38.89 -0.34 -3.82 16 16 C 0.15 3.71 5.51 -106.54 -0.59 3.12 16 17 C -0.41 -10.80 7.70 -37.82 -0.29 -11.09 16 18 H 0.11 2.91 5.88 -52.48 -0.31 2.60 16 19 C 0.07 1.73 5.26 -17.30 -0.09 1.64 16 20 N -0.79 -19.67 11.12 55.56 0.62 -19.05 16 21 Si 0.91 19.23 29.57 -169.99 -5.03 14.21 16 22 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 C -0.08 -1.24 8.36 -38.96 -0.33 -1.57 16 26 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 27 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 28 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.41 5.23 6.92 -40.82 -0.28 4.95 16 30 H 0.09 1.39 6.48 -52.48 -0.34 1.05 16 31 H 0.09 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.12 2.93 6.57 -52.49 -0.34 2.59 16 34 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 35 H 0.15 2.79 6.39 -52.48 -0.34 2.45 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -29.12 313.31 -7.93 -37.05 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -2.86 Total: 8.39 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -6.16 Total: -15.39 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 1.34 Total: -36.59 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.06 Total: -12.38 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.12 -7.93 -37.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463574663.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.829 kcal (2) G-P(sol) polarization free energy of solvation -29.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds