Wall clock time and date at job start Tue Mar 31 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39687 * 120.11693 * 14.60542 * 3 2 1 5 5 C 1.37976 * 119.99138 * 179.71366 * 4 3 2 6 6 C 1.38247 * 120.23569 * 0.58109 * 5 4 3 7 7 C 1.38993 * 120.22853 * 359.67429 * 6 5 4 8 8 N 1.39832 * 119.99700 * 180.02562 * 7 6 5 9 9 C 1.34779 * 120.00044 * 213.19513 * 8 7 6 10 10 O 1.21634 * 119.99834 * 5.05857 * 9 8 7 11 11 C 1.47384 * 119.99961 * 185.05576 * 9 8 7 12 12 C 1.39246 * 120.28949 * 5.75215 * 11 9 8 13 13 C 1.38200 * 120.09534 * 179.97438 * 12 11 9 14 14 C 1.38844 * 120.67584 * 0.02562 * 13 12 11 15 15 C 1.37589 * 120.57744 * 359.97438 * 14 13 12 16 16 C 1.40706 * 119.88158 * 359.72435 * 15 14 13 17 17 C 1.40877 * 120.33186 * 180.29753 * 16 15 14 18 18 H 1.08003 * 120.00001 * 213.89044 * 17 16 15 19 19 C 1.40273 * 119.99645 * 33.88796 * 17 16 15 20 20 N 1.30623 * 120.00323 * 9.20780 * 19 17 16 21 21 Si 1.86806 * 119.99505 * 189.20664 * 19 17 16 22 22 H 1.48497 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.46811 * 120.00626 * 21 19 17 24 24 H 1.48499 * 109.46820 * 239.99690 * 21 19 17 25 25 C 1.38660 * 120.00004 * 0.04198 * 7 6 5 26 26 H 1.08005 * 120.00064 * 359.97438 * 4 3 2 27 27 H 1.08005 * 119.87886 * 180.25480 * 5 4 3 28 28 H 1.07997 * 119.88657 * 179.69121 * 6 5 4 29 29 H 0.96996 * 120.00224 * 33.19427 * 8 7 6 30 30 H 1.08008 * 119.95144 * 0.02590 * 12 11 9 31 31 H 1.07993 * 119.65978 * 179.97438 * 13 12 11 32 32 H 1.08002 * 119.71177 * 179.97438 * 14 13 12 33 33 H 1.08000 * 120.05877 * 180.02562 * 15 14 13 34 34 H 0.96996 * 119.99776 * 180.02562 * 20 19 17 35 35 H 1.08007 * 120.11046 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -1.1683 -0.3047 5 6 4.6492 -1.1633 -0.3097 6 6 5.3422 -0.0072 -0.0022 7 6 4.6539 1.1599 0.3075 8 7 5.3598 2.3265 0.6173 9 6 4.8568 3.2014 1.5107 10 8 3.8360 2.9338 2.1155 11 6 5.5437 4.4823 1.7548 12 6 6.6433 4.8479 0.9826 13 6 7.2840 6.0502 1.2146 14 6 6.8438 6.9059 2.2154 15 6 5.7601 6.5724 2.9949 16 6 5.0860 5.3571 2.7751 17 6 3.9716 5.0090 3.5635 18 1 3.7882 3.9742 3.8123 19 6 3.1002 6.0065 4.0253 20 7 3.2138 7.2297 3.5813 21 14 1.7773 5.5855 5.2751 22 1 1.8582 4.1421 5.6144 23 1 1.9807 6.3955 6.5031 24 1 0.4408 5.8844 4.7010 25 6 3.2673 1.1672 0.3097 26 1 2.7317 -2.0748 -0.5404 27 1 5.1897 -2.0671 -0.5496 28 1 6.4222 -0.0110 -0.0030 29 1 6.2114 2.5062 0.1892 30 1 6.9954 4.1913 0.2007 31 1 8.1364 6.3265 0.6118 32 1 7.3564 7.8416 2.3835 33 1 5.4246 7.2446 3.7708 34 1 2.6114 7.9195 3.9010 35 1 2.7307 2.0730 0.5506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463574663.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:51 Heat of formation + Delta-G solvation = 26.429856 kcal Electronic energy + Delta-G solvation = -21538.932109 eV Core-core repulsion = 18272.972147 eV Total energy + Delta-G solvation = -3265.959962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.49288 -39.90679 -38.56887 -37.55063 -35.90917 -35.30745 -32.24401 -32.12486 -31.57828 -30.10253 -27.34944 -25.00988 -24.75624 -23.28322 -22.57030 -21.05156 -20.29316 -19.24116 -18.08052 -17.28812 -17.16981 -16.92948 -16.39176 -15.98384 -15.75432 -15.45728 -15.08275 -14.98912 -14.64338 -14.50257 -14.19779 -14.01887 -13.89955 -13.57690 -13.33144 -12.91609 -12.86587 -12.70539 -12.52357 -12.45582 -12.27406 -11.88391 -11.50613 -11.30889 -11.16789 -10.31817 -9.88523 -9.48446 -9.26327 -9.02228 -8.72001 -6.39729 -0.19908 0.26091 0.61574 0.99906 1.29788 1.43525 1.45224 1.52057 1.86911 2.16243 2.29126 2.30651 2.74338 2.86369 2.96922 3.71058 3.99637 4.13593 4.22981 4.30337 4.35524 4.52076 4.60553 4.61864 4.85606 4.94913 5.09166 5.22803 5.29356 5.31783 5.38247 5.42551 5.58386 5.61099 5.81470 5.99251 6.06636 6.10809 6.32448 6.36073 6.59600 6.72984 6.88466 6.96005 7.53187 8.24940 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013443 B = 0.005421 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.318189 B = 5163.663840 C = 6905.054916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.278 3.722 3 C -0.029 4.029 4 C -0.081 4.081 5 C -0.084 4.084 6 C -0.107 4.107 7 C 0.143 3.857 8 N -0.670 5.670 9 C 0.559 3.441 10 O -0.556 6.556 11 C -0.282 4.282 12 C -0.050 4.050 13 C -0.234 4.234 14 C -0.091 4.091 15 C -0.177 4.177 16 C 0.117 3.883 17 C -0.454 4.454 18 H 0.083 0.917 19 C 0.034 3.966 20 N -0.820 5.820 21 Si 0.971 3.029 22 H -0.270 1.270 23 H -0.252 1.252 24 H -0.272 1.272 25 C -0.104 4.104 26 H 0.160 0.840 27 H 0.183 0.817 28 H 0.167 0.833 29 H 0.423 0.577 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.289 0.711 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.221 -12.241 -8.109 17.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.037 4.037 3 C -0.033 4.033 4 C -0.103 4.103 5 C -0.102 4.102 6 C -0.128 4.128 7 C 0.047 3.953 8 N -0.317 5.317 9 C 0.354 3.646 10 O -0.436 6.436 11 C -0.287 4.287 12 C -0.069 4.069 13 C -0.253 4.253 14 C -0.109 4.109 15 C -0.197 4.197 16 C 0.113 3.887 17 C -0.483 4.483 18 H 0.101 0.899 19 C -0.181 4.181 20 N -0.446 5.446 21 Si 0.793 3.207 22 H -0.194 1.194 23 H -0.176 1.176 24 H -0.197 1.197 25 C -0.128 4.128 26 H 0.177 0.823 27 H 0.200 0.800 28 H 0.184 0.816 29 H 0.263 0.737 30 H 0.158 0.842 31 H 0.153 0.847 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.651 -12.103 -7.645 15.785 hybrid contribution -0.416 0.836 0.660 1.143 sum 6.235 -11.267 -6.986 14.650 Atomic orbital electron populations 1.81201 1.13355 1.09085 1.10800 1.26097 0.93124 0.92228 0.92208 1.15915 0.83159 0.96238 1.08016 1.21455 0.95279 0.95878 0.97638 1.21352 0.92681 0.98821 0.97351 1.21568 1.02065 0.89714 0.99430 1.17830 0.90324 0.87906 0.99194 1.43408 1.24993 1.19776 1.43511 1.18572 0.83932 0.84124 0.77927 1.90707 1.26211 1.77121 1.49542 1.19690 1.05406 0.98504 1.05069 1.21107 0.92755 0.96496 0.96519 1.20834 1.04558 0.96536 1.03364 1.21212 0.95564 0.98788 0.95362 1.21306 0.97027 0.98826 1.02509 1.17839 0.91010 0.91045 0.88813 1.20184 1.07105 0.95341 1.25689 0.89878 1.26714 1.00562 0.94008 0.96804 1.69731 1.35383 1.02870 1.36620 0.85322 0.77474 0.79406 0.78542 1.19412 1.17566 1.19673 1.21064 0.94277 0.97713 0.99697 0.82256 0.79991 0.81586 0.73738 0.84233 0.84701 0.86307 0.88319 0.90021 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -16.67 18.54 19.00 0.35 -16.32 16 2 C 0.28 8.70 15.33 88.33 1.35 10.06 16 3 C -0.03 -0.78 5.73 -21.38 -0.12 -0.90 16 4 C -0.08 -1.36 9.75 22.56 0.22 -1.14 16 5 C -0.08 -1.03 10.02 22.21 0.22 -0.81 16 6 C -0.11 -1.77 9.95 22.45 0.22 -1.55 16 7 C 0.14 3.90 6.28 38.15 0.24 4.14 16 8 N -0.67 -20.40 5.27 -306.57 -1.62 -22.01 16 9 C 0.56 24.24 7.46 86.65 0.65 24.88 16 10 O -0.56 -28.74 11.23 -4.14 -0.05 -28.79 16 11 C -0.28 -12.89 5.92 -19.70 -0.12 -13.01 16 12 C -0.05 -1.83 9.50 22.50 0.21 -1.61 16 13 C -0.23 -8.44 10.03 22.41 0.22 -8.21 16 14 C -0.09 -3.75 10.01 22.26 0.22 -3.52 16 15 C -0.18 -8.87 8.62 22.72 0.20 -8.67 16 16 C 0.12 6.22 5.51 -21.10 -0.12 6.10 16 17 C -0.45 -25.71 7.70 23.41 0.18 -25.53 16 18 H 0.08 4.96 5.88 -2.91 -0.02 4.94 16 19 C 0.03 1.83 5.26 85.37 0.45 2.28 16 20 N -0.82 -43.70 11.12 21.88 0.24 -43.46 16 21 Si 0.97 42.27 29.57 68.60 2.03 44.29 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 C -0.10 -3.39 8.36 22.67 0.19 -3.20 16 26 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 27 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 28 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 29 H 0.42 9.44 6.92 -92.71 -0.64 8.80 16 30 H 0.14 3.60 6.48 -2.91 -0.02 3.58 16 31 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 32 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.10 5.21 6.57 -2.91 -0.02 5.20 16 34 H 0.29 13.95 8.29 -92.71 -0.77 13.18 16 35 H 0.10 4.26 6.39 -2.91 -0.02 4.24 16 Total: -1.00 -72.55 313.31 5.71 -66.84 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.52 Total: 20.16 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 4.23 Total: -20.71 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -1.02 Total: -81.79 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.05 Total: -28.79 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -72.55 5.71 -66.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463574663.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.270 kcal (2) G-P(sol) polarization free energy of solvation -72.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds