Wall clock time and date at job start Tue Mar 31 2020 06:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00279 * 2 1 4 4 H 1.48501 * 109.47026 * 269.99810 * 3 2 1 5 5 H 1.48507 * 109.46843 * 29.99315 * 3 2 1 6 6 H 1.48497 * 109.47525 * 149.99449 * 3 2 1 7 7 C 1.37875 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.53039 * 109.46048 * 179.97438 * 9 7 2 11 11 C 1.53196 * 109.31157 * 181.37004 * 10 9 7 12 12 N 1.46920 * 108.77702 * 305.36763 * 11 10 9 13 13 C 1.34782 * 120.62851 * 233.58526 * 12 11 10 14 14 O 1.21725 * 119.99861 * 5.23393 * 13 12 11 15 15 C 1.46241 * 120.00005 * 185.23614 * 13 12 11 16 16 C 1.35241 * 120.00241 * 175.01440 * 15 13 12 17 17 C 1.46399 * 120.00099 * 180.27168 * 16 15 13 18 18 N 1.30836 * 125.55158 * 179.72671 * 17 16 15 19 19 C 1.30804 * 115.81565 * 179.97438 * 18 17 16 20 20 C 1.34170 * 115.80460 * 359.97438 * 19 18 17 21 21 S 1.71053 * 109.15542 * 359.76873 * 20 19 18 22 22 C 1.46920 * 118.74068 * 53.85861 * 12 11 10 23 23 C 1.53043 * 109.44837 * 300.05859 * 9 7 2 24 24 H 0.97000 * 119.99701 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46261 * 60.02546 * 9 7 2 26 26 H 1.08996 * 109.49939 * 61.42290 * 10 9 7 27 27 H 1.09002 * 109.49622 * 301.32122 * 10 9 7 28 28 H 1.09003 * 109.58562 * 185.57302 * 11 10 9 29 29 H 1.09008 * 109.70264 * 65.22367 * 11 10 9 30 30 H 1.08001 * 119.99868 * 355.01605 * 15 13 12 31 31 H 1.08001 * 119.99891 * 0.02562 * 16 15 13 32 32 H 1.08003 * 122.09560 * 180.02562 * 19 18 17 33 33 H 1.08000 * 125.42347 * 180.02562 * 20 19 18 34 34 H 1.08999 * 109.58790 * 65.92898 * 22 12 11 35 35 H 1.09002 * 109.58834 * 186.35285 * 22 12 11 36 36 H 1.08995 * 109.49894 * 298.57598 * 23 9 7 37 37 H 1.08998 * 109.49403 * 58.67307 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4767 -4.9866 -0.0340 12 7 0.5225 -5.0087 1.0829 13 6 0.5117 -6.0348 1.9567 14 8 1.3578 -6.9067 1.8819 15 6 -0.5165 -6.1008 2.9945 16 6 -0.5892 -7.1795 3.8069 17 6 -1.6223 -7.2482 4.8419 18 7 -1.7946 -8.2378 5.6803 19 6 -2.7798 -8.0998 6.5296 20 6 -3.4827 -6.9614 6.4288 21 16 -2.8303 -6.0088 5.1668 22 6 -0.4238 -3.8939 1.2258 23 6 0.3698 -2.5787 1.2492 24 1 -0.4850 0.8401 -0.0004 25 1 0.6251 -2.5571 -0.8900 26 1 2.8557 -3.6192 0.9028 27 1 2.8881 -3.5914 -0.8772 28 1 2.1752 -5.8175 0.0655 29 1 0.9372 -5.0738 -0.9773 30 1 -1.2179 -5.2880 3.1121 31 1 0.1124 -7.9922 3.6895 32 1 -3.0122 -8.8545 7.2664 33 1 -4.3237 -6.6880 7.0488 34 1 -1.1153 -3.8913 0.3832 35 1 -0.9798 -4.0035 2.1569 36 1 0.9971 -2.5457 2.1400 37 1 -0.3227 -1.7371 1.2600 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527956902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:42 Heat of formation + Delta-G solvation = 23.742221 kcal Electronic energy + Delta-G solvation = -20303.263276 eV Core-core repulsion = 17172.630721 eV Total energy + Delta-G solvation = -3130.632555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.91860 -39.63879 -36.92330 -34.10272 -33.55166 -31.38019 -30.26072 -29.79033 -26.76122 -25.72925 -23.57172 -22.62445 -21.81534 -20.23655 -19.72775 -18.41949 -17.84971 -17.20651 -16.28911 -15.74707 -15.56763 -14.89788 -14.61716 -14.56508 -14.13739 -13.75482 -13.35898 -13.16133 -12.87172 -12.81010 -12.38059 -12.19566 -11.71564 -11.53988 -11.32285 -10.97573 -10.71721 -10.64506 -10.42420 -10.16065 -10.06527 -9.78435 -9.74556 -9.52403 -9.20513 -8.96919 -8.61987 -8.40809 -8.03134 -6.06511 -4.12378 -0.11784 1.01142 1.46860 1.47790 2.70547 3.26358 3.28605 3.33621 3.37329 3.48941 3.96911 4.38565 4.71087 4.83501 4.86996 5.07923 5.19608 5.23439 5.52785 5.71690 5.74183 5.85425 5.94978 6.04604 6.11117 6.14373 6.22897 6.41097 6.61651 6.85533 6.99844 7.09735 7.23069 7.38515 7.62563 7.83335 7.88096 7.99887 8.36794 8.44071 8.91013 9.52964 10.99032 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021903 B = 0.003476 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.050977 B = 8052.421751 C = 9031.807697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.124 4.124 11 C 0.111 3.889 12 N -0.590 5.590 13 C 0.543 3.457 14 O -0.555 6.555 15 C -0.166 4.166 16 C -0.009 4.009 17 C 0.066 3.934 18 N -0.448 5.448 19 C 0.034 3.966 20 C -0.287 4.287 21 S 0.173 5.827 22 C 0.099 3.901 23 C -0.124 4.124 24 H 0.260 0.740 25 H 0.028 0.972 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.133 0.867 31 H 0.158 0.842 32 H 0.175 0.825 33 H 0.180 0.820 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.500 -11.050 9.395 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.011 4.011 12 N -0.321 5.321 13 C 0.332 3.668 14 O -0.436 6.436 15 C -0.193 4.193 16 C -0.032 4.032 17 C -0.205 4.205 18 N -0.162 5.162 19 C -0.122 4.122 20 C -0.428 4.428 21 S 0.429 5.571 22 C -0.023 4.023 23 C -0.163 4.163 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.150 0.850 31 H 0.175 0.825 32 H 0.192 0.808 33 H 0.197 0.803 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.132 -10.837 8.926 16.224 hybrid contribution -0.047 0.439 0.866 0.972 sum -8.179 -10.397 9.792 16.458 Atomic orbital electron populations 1.69829 1.05834 1.26482 1.50972 1.24955 0.94881 0.99060 0.95055 0.86615 0.79924 0.83484 0.78109 1.20722 1.21250 1.19970 1.21204 0.92982 0.90544 1.50244 0.92678 1.18641 0.92659 0.91776 0.93964 1.22013 0.98938 0.94085 1.01134 1.21748 0.91750 0.99980 0.87604 1.48144 1.35658 1.20692 1.27634 1.17957 0.84850 0.82055 0.81905 1.90785 1.39499 1.39695 1.73669 1.23284 1.00149 0.98840 0.97019 1.21390 0.93491 0.98910 0.89411 1.26286 1.00583 0.93169 1.00459 1.67025 1.18500 1.26074 1.04596 1.21732 0.92547 0.98099 0.99858 1.26620 1.08815 1.00536 1.06797 1.84064 1.24786 1.21624 1.26584 1.22266 0.91675 0.87550 1.00826 1.22120 1.00066 0.94376 0.99722 0.92972 0.95390 0.92840 0.92028 0.90130 0.91941 0.84958 0.82490 0.80846 0.80287 0.91565 0.91378 0.94072 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.84 11.30 55.43 0.63 -23.21 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 3 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.51 -13.34 8.56 -34.44 -0.29 -13.63 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 10 C -0.12 -2.47 5.30 -26.61 -0.14 -2.61 16 11 C 0.11 1.97 6.44 -3.71 -0.02 1.95 16 12 N -0.59 -10.27 2.97 -174.21 -0.52 -10.79 16 13 C 0.54 9.26 7.61 -13.04 -0.10 9.16 16 14 O -0.56 -10.92 15.66 5.17 0.08 -10.84 16 15 C -0.17 -2.26 8.89 -37.44 -0.33 -2.59 16 16 C -0.01 -0.12 9.74 -37.37 -0.36 -0.48 16 17 C 0.07 0.80 7.41 -14.69 -0.11 0.69 16 18 N -0.45 -5.60 10.67 -11.69 -0.12 -5.73 16 19 C 0.03 0.33 11.24 -19.42 -0.22 0.11 16 20 C -0.29 -2.41 11.08 29.30 0.32 -2.08 16 21 S 0.17 1.66 22.05 -107.50 -2.37 -0.71 16 22 C 0.10 1.67 6.34 -3.49 -0.02 1.64 16 23 C -0.12 -2.63 5.17 -26.38 -0.14 -2.77 16 24 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.08 1.42 6.99 -51.93 -0.36 1.06 16 29 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 30 H 0.13 1.56 4.99 -52.49 -0.26 1.30 16 31 H 0.16 2.12 7.53 -52.49 -0.40 1.72 16 32 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.96 5.37 -51.93 -0.28 0.68 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.11 2.48 6.03 -51.93 -0.31 2.17 16 LS Contribution 320.59 15.07 4.83 4.83 Total: -1.00 -29.43 320.59 -8.73 -38.16 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.54 Total: 0.96 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.70 Total: -8.17 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.01 Total: -39.72 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.37 Total: -0.71 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.43 -8.73 -38.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527956902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.907 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds