Wall clock time and date at job start Tue Mar 31 2020 06:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00279 * 2 1 4 4 H 1.48501 * 109.47026 * 269.99810 * 3 2 1 5 5 H 1.48507 * 109.46843 * 29.99315 * 3 2 1 6 6 H 1.48497 * 109.47525 * 149.99449 * 3 2 1 7 7 C 1.37875 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.53039 * 109.46048 * 179.97438 * 9 7 2 11 11 C 1.53196 * 109.31157 * 181.37004 * 10 9 7 12 12 N 1.46920 * 108.77702 * 305.36763 * 11 10 9 13 13 C 1.34782 * 120.62851 * 233.58526 * 12 11 10 14 14 O 1.21725 * 119.99861 * 5.23393 * 13 12 11 15 15 C 1.46241 * 120.00005 * 185.23614 * 13 12 11 16 16 C 1.35241 * 120.00241 * 175.01440 * 15 13 12 17 17 C 1.46399 * 120.00099 * 180.27168 * 16 15 13 18 18 N 1.30836 * 125.55158 * 179.72671 * 17 16 15 19 19 C 1.30804 * 115.81565 * 179.97438 * 18 17 16 20 20 C 1.34170 * 115.80460 * 359.97438 * 19 18 17 21 21 S 1.71053 * 109.15542 * 359.76873 * 20 19 18 22 22 C 1.46920 * 118.74068 * 53.85861 * 12 11 10 23 23 C 1.53043 * 109.44837 * 300.05859 * 9 7 2 24 24 H 0.97000 * 119.99701 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46261 * 60.02546 * 9 7 2 26 26 H 1.08996 * 109.49939 * 61.42290 * 10 9 7 27 27 H 1.09002 * 109.49622 * 301.32122 * 10 9 7 28 28 H 1.09003 * 109.58562 * 185.57302 * 11 10 9 29 29 H 1.09008 * 109.70264 * 65.22367 * 11 10 9 30 30 H 1.08001 * 119.99868 * 355.01605 * 15 13 12 31 31 H 1.08001 * 119.99891 * 0.02562 * 16 15 13 32 32 H 1.08003 * 122.09560 * 180.02562 * 19 18 17 33 33 H 1.08000 * 125.42347 * 180.02562 * 20 19 18 34 34 H 1.08999 * 109.58790 * 65.92898 * 22 12 11 35 35 H 1.09002 * 109.58834 * 186.35285 * 22 12 11 36 36 H 1.08995 * 109.49894 * 298.57598 * 23 9 7 37 37 H 1.08998 * 109.49403 * 58.67307 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4767 -4.9866 -0.0340 12 7 0.5225 -5.0087 1.0829 13 6 0.5117 -6.0348 1.9567 14 8 1.3578 -6.9067 1.8819 15 6 -0.5165 -6.1008 2.9945 16 6 -0.5892 -7.1795 3.8069 17 6 -1.6223 -7.2482 4.8419 18 7 -1.7946 -8.2378 5.6803 19 6 -2.7798 -8.0998 6.5296 20 6 -3.4827 -6.9614 6.4288 21 16 -2.8303 -6.0088 5.1668 22 6 -0.4238 -3.8939 1.2258 23 6 0.3698 -2.5787 1.2492 24 1 -0.4850 0.8401 -0.0004 25 1 0.6251 -2.5571 -0.8900 26 1 2.8557 -3.6192 0.9028 27 1 2.8881 -3.5914 -0.8772 28 1 2.1752 -5.8175 0.0655 29 1 0.9372 -5.0738 -0.9773 30 1 -1.2179 -5.2880 3.1121 31 1 0.1124 -7.9922 3.6895 32 1 -3.0122 -8.8545 7.2664 33 1 -4.3237 -6.6880 7.0488 34 1 -1.1153 -3.8913 0.3832 35 1 -0.9798 -4.0035 2.1569 36 1 0.9971 -2.5457 2.1400 37 1 -0.3227 -1.7371 1.2600 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527956902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:42 Heat of formation + Delta-G solvation = 6.861377 kcal Electronic energy + Delta-G solvation = -20303.995284 eV Core-core repulsion = 17172.630721 eV Total energy + Delta-G solvation = -3131.364563 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17964 -40.55484 -38.46372 -35.33573 -35.13063 -33.06123 -31.74300 -30.74792 -28.27183 -26.94540 -24.97953 -24.12490 -23.14103 -21.22413 -21.05893 -19.71675 -18.85393 -18.58371 -18.02883 -16.94063 -16.59667 -16.46621 -16.16239 -15.54286 -15.21177 -14.95472 -14.70651 -14.60035 -14.43151 -14.12243 -13.94501 -13.42651 -13.16725 -12.93521 -12.79762 -12.44915 -12.41752 -12.12510 -11.93201 -11.61916 -11.47590 -11.10318 -10.98240 -10.88371 -10.68940 -10.54309 -10.36660 -9.64650 -9.33173 -8.05861 -6.18310 -0.99430 0.23496 0.53325 0.73584 1.42680 1.45302 1.53741 1.83200 2.01374 2.29054 2.46134 3.02317 3.20807 3.68718 3.85649 4.08776 4.22519 4.30360 4.33758 4.38400 4.44456 4.51037 4.60380 4.72068 4.82105 4.90589 4.97983 5.01063 5.19970 5.21885 5.29439 5.45151 5.57612 5.67349 6.02118 6.15981 6.41847 6.46903 6.62117 6.90654 7.09909 7.49131 8.97474 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021903 B = 0.003476 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.050977 B = 8052.421751 C = 9031.807697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.020 3.980 3 Si 0.946 3.054 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.045 0.955 9 C 0.045 3.955 10 C -0.114 4.114 11 C 0.116 3.884 12 N -0.595 5.595 13 C 0.543 3.457 14 O -0.588 6.588 15 C -0.180 4.180 16 C 0.014 3.986 17 C 0.026 3.974 18 N -0.469 5.469 19 C 0.014 3.986 20 C -0.266 4.266 21 S 0.206 5.794 22 C 0.109 3.891 23 C -0.116 4.116 24 H 0.262 0.738 25 H 0.007 0.993 26 H 0.040 0.960 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.153 0.847 31 H 0.145 0.855 32 H 0.199 0.801 33 H 0.214 0.786 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.028 0.972 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.198 -11.186 10.853 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.152 4.152 11 C -0.006 4.006 12 N -0.326 5.326 13 C 0.335 3.665 14 O -0.471 6.471 15 C -0.207 4.207 16 C -0.009 4.009 17 C -0.244 4.244 18 N -0.185 5.185 19 C -0.142 4.142 20 C -0.406 4.406 21 S 0.462 5.538 22 C -0.013 4.013 23 C -0.155 4.155 24 H 0.071 0.929 25 H 0.025 0.975 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.170 0.830 31 H 0.162 0.838 32 H 0.216 0.784 33 H 0.231 0.769 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.047 0.953 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.827 -10.972 10.376 18.017 hybrid contribution 0.402 0.445 0.524 0.796 sum -9.425 -10.527 10.900 17.846 Atomic orbital electron populations 1.69930 1.06651 1.27104 1.51205 1.25588 0.95708 1.01750 0.94894 0.85741 0.78762 0.80166 0.78050 1.20437 1.20707 1.20001 1.21540 0.92855 0.92337 1.50576 0.93668 1.18616 0.93061 0.91775 0.93909 1.21860 0.98372 0.94370 1.00624 1.21640 0.91985 0.98373 0.88618 1.48163 1.35680 1.21057 1.27688 1.18414 0.84967 0.81210 0.81941 1.90763 1.41009 1.40804 1.74536 1.23018 1.00419 1.00191 0.97033 1.21333 0.92883 0.97872 0.88859 1.26108 1.02092 0.94836 1.01343 1.67006 1.19592 1.26806 1.05049 1.22160 0.92338 0.99467 1.00226 1.27115 1.08570 0.99272 1.05676 1.83961 1.23148 1.20322 1.26400 1.22162 0.91016 0.85075 1.03008 1.21889 0.99422 0.96133 0.98049 0.92894 0.97530 0.94125 0.91728 0.90022 0.90609 0.83020 0.83794 0.78415 0.76883 0.90772 0.88054 0.95319 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.90 11.30 21.45 0.24 -48.66 16 2 C 0.02 1.04 5.30 84.65 0.45 1.49 16 3 Si 0.95 42.21 29.54 68.60 2.03 44.24 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.53 -28.41 8.56 25.60 0.22 -28.19 16 8 H 0.05 2.42 7.74 -2.91 -0.02 2.40 16 9 C 0.04 2.11 2.06 -11.51 -0.02 2.08 16 10 C -0.11 -4.62 5.30 30.67 0.16 -4.45 16 11 C 0.12 4.09 6.44 86.36 0.56 4.65 16 12 N -0.60 -20.33 2.97 -823.27 -2.44 -22.77 16 13 C 0.54 18.25 7.61 86.32 0.66 18.91 16 14 O -0.59 -23.24 15.66 -4.43 -0.07 -23.31 16 15 C -0.18 -4.69 8.89 23.66 0.21 -4.48 16 16 C 0.01 0.34 9.74 23.70 0.23 0.58 16 17 C 0.03 0.58 7.41 86.97 0.64 1.23 16 18 N -0.47 -11.02 10.67 -190.91 -2.04 -13.06 16 19 C 0.01 0.23 11.24 83.92 0.94 1.17 16 20 C -0.27 -3.45 11.08 66.89 0.74 -2.71 16 21 S 0.21 3.35 22.05 -56.49 -1.25 2.11 16 22 C 0.11 3.56 6.34 86.51 0.55 4.11 16 23 C -0.12 -4.95 5.17 30.82 0.16 -4.79 16 24 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 25 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.08 2.88 6.99 -2.39 -0.02 2.86 16 29 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 30 H 0.15 3.23 4.99 -2.91 -0.01 3.22 16 31 H 0.14 3.94 7.53 -2.91 -0.02 3.92 16 32 H 0.20 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.21 1.22 8.06 -2.91 -0.02 1.19 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.10 2.63 5.37 -2.39 -0.01 2.62 16 36 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 3.94 6.03 -2.39 -0.01 3.93 16 Total: -1.00 -64.07 320.59 3.06 -61.01 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.08 Total: 10.85 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 5.50 Total: -10.41 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -4.24 Total: -84.49 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.07 Total: -23.31 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.25 Total: 2.11 kcal Total: -64.07 3.06 -61.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527956902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.874 kcal (2) G-P(sol) polarization free energy of solvation -64.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds