Wall clock time and date at job start Tue Mar 31 2020 06:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00145 * 2 1 4 4 H 1.48495 * 109.47153 * 239.99246 * 3 2 1 5 5 H 1.48497 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47107 * 119.99625 * 3 2 1 7 7 C 1.37881 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99621 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00321 * 0.02562 * 7 2 1 10 10 C 1.53034 * 109.46426 * 179.97438 * 9 7 2 11 11 C 1.53192 * 109.31601 * 181.36903 * 10 9 7 12 12 N 1.46921 * 108.77309 * 305.36284 * 11 10 9 13 13 C 1.34775 * 120.63102 * 233.58463 * 12 11 10 14 14 O 1.21727 * 120.00197 * 10.41054 * 13 12 11 15 15 C 1.46252 * 120.00056 * 190.69465 * 13 12 11 16 16 C 1.35241 * 119.99967 * 171.97508 * 15 13 12 17 17 C 1.46401 * 120.00169 * 351.34556 * 16 15 13 18 18 N 1.30832 * 125.55047 * 113.60514 * 17 16 15 19 19 C 1.30812 * 115.81275 * 179.97438 * 18 17 16 20 20 C 1.34169 * 115.80485 * 359.97438 * 19 18 17 21 21 S 1.71052 * 109.15541 * 359.76833 * 20 19 18 22 22 C 1.46928 * 118.73856 * 53.86300 * 12 11 10 23 23 C 1.53041 * 109.44645 * 300.05585 * 9 7 2 24 24 H 0.97006 * 120.00138 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46107 * 60.01680 * 9 7 2 26 26 H 1.09002 * 109.49597 * 61.41578 * 10 9 7 27 27 H 1.09006 * 109.52063 * 301.34056 * 10 9 7 28 28 H 1.09003 * 109.58540 * 185.57610 * 11 10 9 29 29 H 1.08998 * 109.70365 * 65.21987 * 11 10 9 30 30 H 1.07998 * 120.00210 * 351.97307 * 15 13 12 31 31 H 1.07999 * 119.99820 * 171.34775 * 16 15 13 32 32 H 1.07998 * 122.09856 * 180.02562 * 19 18 17 33 33 H 1.08003 * 125.41955 * 180.02562 * 20 19 18 34 34 H 1.08994 * 109.58721 * 65.92308 * 22 12 11 35 35 H 1.09003 * 109.58439 * 186.34716 * 22 12 11 36 36 H 1.08997 * 109.50104 * 298.57774 * 23 9 7 37 37 H 1.09008 * 109.49658 * 58.66931 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2455 -3.6623 0.0005 11 6 1.4765 -4.9867 -0.0340 12 7 0.5224 -5.0087 1.0830 13 6 0.5116 -6.0348 1.9568 14 8 1.4103 -6.8557 1.9427 15 6 -0.5831 -6.1654 2.9178 16 6 -0.6822 -7.2762 3.6829 17 6 0.1866 -8.4252 3.4214 18 7 1.1212 -8.8699 4.2218 19 6 1.7855 -9.9137 3.7971 20 6 1.4201 -10.3901 2.5973 21 16 0.1385 -9.4388 1.9822 22 6 -0.4239 -3.8938 1.2259 23 6 0.3698 -2.5788 1.2493 24 1 -0.4850 0.8401 -0.0004 25 1 0.6249 -2.5571 -0.8899 26 1 2.8556 -3.6192 0.9028 27 1 2.8884 -3.5918 -0.8770 28 1 2.1750 -5.8175 0.0656 29 1 0.9370 -5.0739 -0.9771 30 1 -1.3123 -5.3749 3.0166 31 1 -1.4024 -7.3157 4.4868 32 1 2.5779 -10.3641 4.3764 33 1 1.8617 -11.2416 2.1010 34 1 -1.1154 -3.8912 0.3834 35 1 -0.9798 -4.0035 2.1571 36 1 0.9971 -2.5457 2.1400 37 1 -0.3228 -1.7370 1.2601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527956928.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:44 Heat of formation + Delta-G solvation = 32.408168 kcal Electronic energy + Delta-G solvation = -20814.812114 eV Core-core repulsion = 17684.555343 eV Total energy + Delta-G solvation = -3130.256771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.93658 -39.19627 -36.91780 -33.80092 -33.54987 -31.34799 -30.14307 -29.52815 -26.60040 -25.48208 -23.56303 -22.60590 -21.77354 -20.18379 -19.44686 -18.49085 -17.56632 -17.08912 -16.26137 -15.73769 -15.00762 -14.92867 -14.61542 -14.38415 -13.76950 -13.47710 -13.40293 -13.06167 -12.90449 -12.78469 -12.33298 -12.23519 -11.58922 -11.42849 -11.32076 -10.94257 -10.69224 -10.41957 -10.15238 -10.04734 -9.86767 -9.58113 -9.41231 -9.38062 -9.18971 -8.95874 -8.40781 -8.32257 -7.98539 -6.05576 -4.11512 0.49914 1.09613 1.71892 1.94132 2.95943 3.28735 3.33320 3.36721 3.42244 3.48757 4.24117 4.39335 4.76018 5.02544 5.17215 5.23647 5.29978 5.53841 5.57990 5.70916 5.85878 5.89868 6.01207 6.06669 6.12440 6.25051 6.26986 6.42378 6.62990 6.87744 7.01182 7.12181 7.24654 7.63436 7.79362 7.87185 7.89294 8.00880 8.37872 8.47317 8.91505 9.53681 10.99934 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.038116 B = 0.003431 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.425771 B = 8158.646595 C = 8340.220611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.593 5.593 13 C 0.529 3.471 14 O -0.543 6.543 15 C -0.160 4.160 16 C -0.021 4.021 17 C 0.100 3.900 18 N -0.454 5.454 19 C 0.035 3.965 20 C -0.294 4.294 21 S 0.167 5.833 22 C 0.101 3.899 23 C -0.124 4.124 24 H 0.261 0.739 25 H 0.028 0.972 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.730 -16.286 4.435 17.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.324 5.324 13 C 0.318 3.682 14 O -0.423 6.423 15 C -0.186 4.186 16 C -0.044 4.044 17 C -0.174 4.174 18 N -0.168 5.168 19 C -0.120 4.120 20 C -0.435 4.435 21 S 0.425 5.575 22 C -0.021 4.021 23 C -0.163 4.163 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.184 0.816 33 H 0.189 0.811 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.891 -16.377 3.970 17.547 hybrid contribution 1.342 0.695 0.467 1.582 sum -3.548 -15.682 4.437 16.680 Atomic orbital electron populations 1.69816 1.05835 1.26598 1.50888 1.24948 0.94882 0.99038 0.95026 0.86671 0.79645 0.83135 0.78644 1.20312 1.21286 1.20323 1.21174 0.92939 0.90594 1.50395 0.92775 1.18627 0.92638 0.91723 0.93959 1.22002 0.98940 0.94188 1.01006 1.21694 0.91752 0.99867 0.87582 1.48136 1.35848 1.20817 1.27628 1.18331 0.86497 0.81837 0.81489 1.90839 1.37645 1.42644 1.71179 1.23623 0.98940 0.98753 0.97264 1.21474 0.96197 0.89389 0.97342 1.25862 0.98405 1.00148 0.92979 1.67048 1.05913 1.11561 1.32276 1.21532 1.01646 0.94063 0.94796 1.26329 1.06484 1.08857 1.01817 1.83622 1.29796 1.21276 1.22812 1.22227 0.91640 0.87497 1.00730 1.22110 1.00046 0.94439 0.99656 0.92909 0.95440 0.92939 0.92208 0.90402 0.92102 0.83296 0.82751 0.81632 0.81107 0.91758 0.91280 0.94162 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.06 11.30 55.43 0.63 -23.43 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.57 8.56 -34.44 -0.29 -13.87 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 10 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 11 C 0.11 2.03 6.44 -3.71 -0.02 2.01 16 12 N -0.59 -10.29 2.97 -174.21 -0.52 -10.81 16 13 C 0.53 8.93 7.46 -13.04 -0.10 8.84 16 14 O -0.54 -10.49 12.68 5.16 0.07 -10.43 16 15 C -0.16 -2.07 9.37 -37.43 -0.35 -2.42 16 16 C -0.02 -0.25 10.23 -37.37 -0.38 -0.63 16 17 C 0.10 1.43 4.88 -14.69 -0.07 1.36 16 18 N -0.45 -7.06 10.67 -11.69 -0.12 -7.19 16 19 C 0.04 0.47 11.24 -19.42 -0.22 0.26 16 20 C -0.29 -3.56 11.08 29.30 0.32 -3.24 16 21 S 0.17 2.13 21.88 -107.50 -2.35 -0.22 16 22 C 0.10 1.70 6.31 -3.49 -0.02 1.68 16 23 C -0.12 -2.66 5.17 -26.39 -0.14 -2.80 16 24 H 0.26 6.77 8.31 -40.82 -0.34 6.44 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.08 1.41 7.01 -51.93 -0.36 1.04 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.15 1.50 5.99 -52.49 -0.31 1.18 16 31 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.17 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.96 5.49 -51.93 -0.28 0.67 16 36 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.11 2.50 6.03 -51.92 -0.31 2.19 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -30.69 317.37 -8.86 -39.55 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.62 Total: 1.01 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.70 Total: -8.96 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -0.01 Total: -41.43 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.35 Total: -0.22 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.69 -8.86 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527956928.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.957 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds