Wall clock time and date at job start Tue Mar 31 2020 06:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00145 * 2 1 4 4 H 1.48495 * 109.47153 * 239.99246 * 3 2 1 5 5 H 1.48497 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47107 * 119.99625 * 3 2 1 7 7 C 1.37881 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99621 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00321 * 0.02562 * 7 2 1 10 10 C 1.53034 * 109.46426 * 179.97438 * 9 7 2 11 11 C 1.53192 * 109.31601 * 181.36903 * 10 9 7 12 12 N 1.46921 * 108.77309 * 305.36284 * 11 10 9 13 13 C 1.34775 * 120.63102 * 233.58463 * 12 11 10 14 14 O 1.21727 * 120.00197 * 10.41054 * 13 12 11 15 15 C 1.46252 * 120.00056 * 190.69465 * 13 12 11 16 16 C 1.35241 * 119.99967 * 171.97508 * 15 13 12 17 17 C 1.46401 * 120.00169 * 351.34556 * 16 15 13 18 18 N 1.30832 * 125.55047 * 113.60514 * 17 16 15 19 19 C 1.30812 * 115.81275 * 179.97438 * 18 17 16 20 20 C 1.34169 * 115.80485 * 359.97438 * 19 18 17 21 21 S 1.71052 * 109.15541 * 359.76833 * 20 19 18 22 22 C 1.46928 * 118.73856 * 53.86300 * 12 11 10 23 23 C 1.53041 * 109.44645 * 300.05585 * 9 7 2 24 24 H 0.97006 * 120.00138 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46107 * 60.01680 * 9 7 2 26 26 H 1.09002 * 109.49597 * 61.41578 * 10 9 7 27 27 H 1.09006 * 109.52063 * 301.34056 * 10 9 7 28 28 H 1.09003 * 109.58540 * 185.57610 * 11 10 9 29 29 H 1.08998 * 109.70365 * 65.21987 * 11 10 9 30 30 H 1.07998 * 120.00210 * 351.97307 * 15 13 12 31 31 H 1.07999 * 119.99820 * 171.34775 * 16 15 13 32 32 H 1.07998 * 122.09856 * 180.02562 * 19 18 17 33 33 H 1.08003 * 125.41955 * 180.02562 * 20 19 18 34 34 H 1.08994 * 109.58721 * 65.92308 * 22 12 11 35 35 H 1.09003 * 109.58439 * 186.34716 * 22 12 11 36 36 H 1.08997 * 109.50104 * 298.57774 * 23 9 7 37 37 H 1.09008 * 109.49658 * 58.66931 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2455 -3.6623 0.0005 11 6 1.4765 -4.9867 -0.0340 12 7 0.5224 -5.0087 1.0830 13 6 0.5116 -6.0348 1.9568 14 8 1.4103 -6.8557 1.9427 15 6 -0.5831 -6.1654 2.9178 16 6 -0.6822 -7.2762 3.6829 17 6 0.1866 -8.4252 3.4214 18 7 1.1212 -8.8699 4.2218 19 6 1.7855 -9.9137 3.7971 20 6 1.4201 -10.3901 2.5973 21 16 0.1385 -9.4388 1.9822 22 6 -0.4239 -3.8938 1.2259 23 6 0.3698 -2.5788 1.2493 24 1 -0.4850 0.8401 -0.0004 25 1 0.6249 -2.5571 -0.8899 26 1 2.8556 -3.6192 0.9028 27 1 2.8884 -3.5918 -0.8770 28 1 2.1750 -5.8175 0.0656 29 1 0.9370 -5.0739 -0.9771 30 1 -1.3123 -5.3749 3.0166 31 1 -1.4024 -7.3157 4.4868 32 1 2.5779 -10.3641 4.3764 33 1 1.8617 -11.2416 2.1010 34 1 -1.1154 -3.8912 0.3834 35 1 -0.9798 -4.0035 2.1571 36 1 0.9971 -2.5457 2.1400 37 1 -0.3228 -1.7370 1.2601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527956928.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:44 Heat of formation + Delta-G solvation = 14.152631 kcal Electronic energy + Delta-G solvation = -20815.603734 eV Core-core repulsion = 17684.555343 eV Total energy + Delta-G solvation = -3131.048391 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20916 -40.27399 -38.43285 -35.32267 -34.83646 -33.06092 -31.69752 -30.57609 -28.21677 -26.71316 -25.01871 -24.11950 -23.13029 -21.43077 -20.77010 -19.69253 -18.89908 -18.36786 -18.02768 -16.92536 -16.50946 -16.25274 -16.03993 -15.59513 -14.97603 -14.84630 -14.65839 -14.56908 -14.31195 -14.17369 -13.83459 -13.48172 -13.17813 -12.99973 -12.79435 -12.47988 -12.39290 -12.13381 -11.94111 -11.49365 -11.09573 -11.05396 -10.98985 -10.72627 -10.46907 -10.40440 -10.36232 -9.44923 -9.32219 -8.07431 -6.20259 -0.48514 0.12177 0.75017 0.95324 1.42646 1.43498 1.50645 1.94262 2.13139 2.28530 2.44646 3.18894 3.31374 3.63738 4.06748 4.19225 4.29163 4.34601 4.35901 4.49794 4.52767 4.58997 4.60145 4.75850 4.85633 4.97271 5.00893 5.06180 5.19429 5.26035 5.34066 5.44291 5.59591 5.67018 6.00472 6.15026 6.40794 6.54608 6.79835 6.88247 7.17722 7.47093 8.95605 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.038116 B = 0.003431 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.425771 B = 8158.646595 C = 8340.220611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.021 3.979 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.539 4.539 8 H 0.043 0.957 9 C 0.046 3.954 10 C -0.114 4.114 11 C 0.120 3.880 12 N -0.599 5.599 13 C 0.524 3.476 14 O -0.572 6.572 15 C -0.173 4.173 16 C -0.005 4.005 17 C 0.075 3.925 18 N -0.484 5.484 19 C 0.013 3.987 20 C -0.291 4.291 21 S 0.174 5.826 22 C 0.112 3.888 23 C -0.116 4.116 24 H 0.262 0.738 25 H 0.007 0.993 26 H 0.034 0.966 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.181 0.819 31 H 0.196 0.804 32 H 0.185 0.815 33 H 0.199 0.801 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.023 0.977 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.706 -17.111 5.035 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.577 4.577 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.152 4.152 11 C -0.002 4.002 12 N -0.330 5.330 13 C 0.316 3.684 14 O -0.454 6.454 15 C -0.198 4.198 16 C -0.028 4.028 17 C -0.198 4.198 18 N -0.199 5.199 19 C -0.142 4.142 20 C -0.431 4.431 21 S 0.432 5.568 22 C -0.010 4.010 23 C -0.155 4.155 24 H 0.072 0.928 25 H 0.025 0.975 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.198 0.802 31 H 0.213 0.787 32 H 0.202 0.798 33 H 0.216 0.784 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.042 0.958 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.874 -17.209 4.573 18.750 hybrid contribution 1.709 0.875 0.262 1.938 sum -4.165 -16.334 4.835 17.536 Atomic orbital electron populations 1.69917 1.06633 1.27226 1.51011 1.25581 0.95725 1.01730 0.94800 0.85802 0.78609 0.79865 0.78484 1.20094 1.20582 1.20268 1.21522 0.92786 0.92496 1.50907 0.93883 1.18599 0.93022 0.91620 0.93995 1.21844 0.98383 0.94809 1.00150 1.21531 0.91984 0.97897 0.88812 1.48165 1.35796 1.21360 1.27690 1.18989 0.87089 0.80939 0.81398 1.90824 1.39099 1.43562 1.71945 1.23642 0.98770 1.00454 0.96977 1.22008 0.95591 0.87949 0.97207 1.26352 0.98862 1.01180 0.93432 1.67051 1.06772 1.12601 1.33435 1.21917 1.02390 0.94126 0.95720 1.26697 1.05845 1.09218 1.01356 1.83550 1.29964 1.21083 1.22251 1.22118 0.90898 0.84776 1.03171 1.21877 0.99356 0.96542 0.97716 0.92827 0.97513 0.94668 0.92145 0.90541 0.90766 0.80156 0.78725 0.79777 0.78422 0.90913 0.87487 0.95806 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.28 11.30 21.45 0.24 -49.04 16 2 C 0.02 1.12 5.30 84.66 0.45 1.57 16 3 Si 0.95 42.67 29.54 68.60 2.03 44.69 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -29.12 8.56 25.60 0.22 -28.90 16 8 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 9 C 0.05 2.20 2.06 -11.52 -0.02 2.17 16 10 C -0.11 -4.71 5.30 30.67 0.16 -4.55 16 11 C 0.12 4.26 6.44 86.36 0.56 4.82 16 12 N -0.60 -19.96 2.97 -823.28 -2.44 -22.41 16 13 C 0.52 16.81 7.46 86.33 0.64 17.45 16 14 O -0.57 -21.56 12.68 -4.43 -0.06 -21.61 16 15 C -0.17 -3.95 9.37 23.66 0.22 -3.73 16 16 C 0.00 -0.10 10.23 23.71 0.24 0.14 16 17 C 0.08 2.02 4.88 86.97 0.42 2.44 16 18 N -0.48 -14.46 10.67 -190.91 -2.04 -16.50 16 19 C 0.01 0.34 11.24 83.92 0.94 1.28 16 20 C -0.29 -6.54 11.08 66.89 0.74 -5.80 16 21 S 0.17 4.16 21.88 -56.49 -1.24 2.92 16 22 C 0.11 3.57 6.31 86.51 0.55 4.12 16 23 C -0.12 -5.00 5.17 30.82 0.16 -4.84 16 24 H 0.26 13.60 8.31 -92.70 -0.77 12.83 16 25 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 28 H 0.08 2.74 7.01 -2.39 -0.02 2.72 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.18 2.84 5.99 -2.91 -0.02 2.82 16 31 H 0.20 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.19 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.20 3.14 8.06 -2.91 -0.02 3.11 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 35 H 0.11 2.60 5.49 -2.39 -0.01 2.59 16 36 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 3.93 6.03 -2.38 -0.01 3.92 16 Total: -1.00 -67.18 317.37 2.86 -64.31 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.08 Total: 11.45 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 5.29 Total: -13.83 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -4.24 Total: -87.94 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.06 Total: -21.61 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.24 Total: 2.92 kcal Total: -67.18 2.86 -64.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527956928.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.467 kcal (2) G-P(sol) polarization free energy of solvation -67.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds