Wall clock time and date at job start Tue Mar 31 2020 06:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34825 * 125.63770 * 2 1 4 4 C 1.40785 * 107.07374 * 179.76395 * 3 2 1 5 5 C 1.36257 * 106.72570 * 0.34835 * 4 3 2 6 6 C 1.47109 * 125.96560 * 179.91019 * 5 4 3 7 7 N 1.30484 * 125.48147 * 359.68276 * 6 5 4 8 8 C 1.31331 * 116.96990 * 180.02562 * 7 6 5 9 9 C 1.33684 * 115.87345 * 359.97438 * 8 7 6 10 10 C 1.50703 * 125.86307 * 180.26623 * 9 8 7 11 11 N 1.46904 * 109.46863 * 89.71597 * 10 9 8 12 12 C 1.46901 * 110.99869 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.46871 * 35.00094 * 12 11 10 14 14 C 1.52999 * 109.47370 * 274.99965 * 12 11 10 15 15 C 1.50694 * 109.47005 * 155.00038 * 12 11 10 16 16 H 1.08001 * 120.00106 * 359.97438 * 15 12 11 17 17 C 1.37881 * 120.00041 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99799 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00138 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46917 * 90.00189 * 19 17 15 21 21 H 1.48503 * 109.47123 * 210.00235 * 19 17 15 22 22 H 1.48497 * 109.47121 * 330.00489 * 19 17 15 23 23 S 1.76171 * 125.48362 * 179.71400 * 6 5 4 24 24 O 1.34275 * 125.64098 * 179.97438 * 2 1 3 25 25 H 1.08993 * 109.46966 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47063 * 300.00159 * 1 2 3 27 27 H 1.08999 * 109.47196 * 60.00074 * 1 2 3 28 28 H 1.07998 * 126.46840 * 359.97438 * 3 2 1 29 29 H 1.08002 * 126.64355 * 180.26490 * 4 3 2 30 30 H 1.07997 * 122.06038 * 180.02562 * 8 7 6 31 31 H 1.09002 * 109.47283 * 209.71144 * 10 9 8 32 32 H 1.08989 * 109.47505 * 329.71658 * 10 9 8 33 33 H 1.00893 * 111.00115 * 303.95278 * 11 10 9 34 34 H 1.08993 * 109.47608 * 179.97438 * 14 12 11 35 35 H 1.08997 * 109.47413 * 300.00211 * 14 12 11 36 36 H 1.09004 * 109.46849 * 59.99713 * 14 12 11 37 37 H 0.96997 * 120.00035 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2925 1.0957 0.0000 4 6 3.6271 0.6475 0.0055 5 6 3.5835 -0.7143 0.0007 6 6 4.7458 -1.6160 0.0020 7 7 5.9955 -1.2407 0.0020 8 6 6.9026 -2.1904 0.0027 9 6 6.4357 -3.4431 0.0038 10 6 7.2718 -4.6969 0.0104 11 7 7.5433 -5.0971 1.3976 12 6 8.3574 -6.3190 1.4433 13 1 9.0618 -6.3175 0.6114 14 6 7.4461 -7.5434 1.3378 15 6 9.1165 -6.3684 2.7442 16 1 9.0055 -5.5716 3.4648 17 6 9.9526 -7.4309 3.0145 18 7 10.0881 -8.4009 2.1368 19 14 10.8941 -7.4919 4.6267 20 1 10.0787 -8.1946 5.6498 21 1 12.1723 -8.2209 4.4263 22 1 11.1797 -6.1089 5.0858 23 16 4.6745 -3.3763 0.0029 24 8 2.2894 -1.0912 0.0005 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.9607 2.1235 -0.0004 29 1 4.5141 1.2638 0.0110 30 1 7.9604 -1.9728 0.0032 31 1 6.7329 -5.4957 -0.4992 32 1 8.2138 -4.5082 -0.5042 33 1 7.9850 -4.3485 1.9100 34 1 8.0501 -8.4500 1.3712 35 1 6.7417 -7.5448 2.1695 36 1 6.8970 -7.5075 0.3968 37 1 10.6766 -9.1482 2.3268 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560574606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:55 Heat of formation + Delta-G solvation = 56.958850 kcal Electronic energy + Delta-G solvation = -19593.316841 eV Core-core repulsion = 16464.124667 eV Total energy + Delta-G solvation = -3129.192174 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.77758 -39.41149 -36.15508 -33.48698 -33.26748 -32.41416 -30.71995 -28.69165 -27.06089 -25.38375 -24.69346 -23.31263 -22.05412 -20.95183 -19.88840 -19.43593 -18.05909 -16.67508 -16.54546 -16.50903 -15.16991 -15.01704 -14.51687 -14.32473 -14.08342 -13.62508 -13.53852 -13.40539 -13.23660 -13.09210 -12.86369 -12.31823 -12.21067 -12.08567 -11.30987 -11.14588 -10.93907 -10.80540 -10.36835 -10.28545 -10.19972 -10.11208 -9.66446 -9.49962 -9.14335 -8.90198 -8.53514 -7.97061 -7.42727 -6.08235 -4.15069 0.27928 1.28418 1.63366 1.80870 2.33014 2.36096 3.06846 3.27368 3.33852 3.37010 4.12132 4.36216 4.58887 4.77593 4.90109 5.00522 5.07137 5.09147 5.23012 5.32064 5.33689 5.51230 5.57120 5.71324 5.81265 5.97249 6.03497 6.20143 6.27970 6.78427 6.81584 7.05203 7.12805 7.38568 7.67426 7.71615 7.80158 8.18532 8.26127 8.53896 8.93768 9.51179 10.98073 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.033109 B = 0.002777 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.493849 B =10080.952950 C =10191.592986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.003 3.997 3 C -0.214 4.214 4 C -0.141 4.141 5 C 0.046 3.954 6 C 0.107 3.893 7 N -0.446 5.446 8 C 0.027 3.973 9 C -0.173 4.173 10 C 0.129 3.871 11 N -0.683 5.683 12 C 0.212 3.788 13 H 0.004 0.996 14 C -0.126 4.126 15 C -0.520 4.520 16 H 0.060 0.940 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 S 0.136 5.864 24 O -0.167 6.167 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.178 0.822 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.335 0.665 34 H 0.082 0.918 35 H 0.032 0.968 36 H 0.004 0.996 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.977 15.878 -6.729 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 C -0.233 4.233 4 C -0.165 4.165 5 C -0.007 4.007 6 C -0.166 4.166 7 N -0.161 5.161 8 C -0.125 4.125 9 C -0.295 4.295 10 C -0.003 4.003 11 N -0.315 5.315 12 C 0.105 3.895 13 H 0.022 0.978 14 C -0.184 4.184 15 C -0.558 4.558 16 H 0.079 0.921 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 S 0.393 5.607 24 O -0.063 6.063 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.172 0.828 29 H 0.176 0.824 30 H 0.195 0.805 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.153 0.847 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.023 0.977 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.228 14.774 -6.689 23.660 hybrid contribution 2.415 0.517 0.644 2.552 sum -14.813 15.290 -6.045 22.131 Atomic orbital electron populations 1.20367 0.84613 1.04378 1.03801 1.22627 0.94038 0.83771 1.04458 1.21544 0.92395 0.99633 1.09747 1.21855 0.98422 0.92622 1.03639 1.18563 0.80315 0.91424 1.10403 1.23767 0.91699 0.92937 1.08154 1.66445 0.98239 1.36530 1.14890 1.21508 1.00134 0.86388 1.04505 1.26262 0.95908 1.00455 1.06900 1.20387 0.95716 0.90250 0.93965 1.60844 1.53600 1.08513 1.08565 1.19149 0.89015 0.84819 0.96495 0.97830 1.21739 0.98543 1.01730 0.96424 1.21224 1.24805 1.07050 1.02747 0.92133 1.24916 0.96597 0.95430 0.97004 1.69889 1.37933 1.10203 1.34776 0.86496 0.79163 0.78163 0.83575 1.20575 1.21229 1.19896 1.85105 1.04331 1.03746 1.67519 1.84008 1.15348 1.35068 1.71881 0.90322 0.89326 0.89357 0.82819 0.82397 0.80469 0.90227 0.93325 0.84737 0.89895 0.94837 0.97727 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.41 36.00 0.37 -0.03 16 2 C 0.00 0.03 7.31 -35.52 -0.26 -0.23 16 3 C -0.21 -2.05 10.78 -39.83 -0.43 -2.48 16 4 C -0.14 -1.68 10.80 -39.33 -0.42 -2.11 16 5 C 0.05 0.63 7.22 -36.70 -0.26 0.37 16 6 C 0.11 1.63 7.46 -14.53 -0.11 1.52 16 7 N -0.45 -6.97 10.52 -11.54 -0.12 -7.09 16 8 C 0.03 0.41 11.14 -19.36 -0.22 0.19 16 9 C -0.17 -2.74 6.10 -35.90 -0.22 -2.96 16 10 C 0.13 2.25 6.01 -4.97 -0.03 2.22 16 11 N -0.68 -14.29 6.29 -109.22 -0.69 -14.98 16 12 C 0.21 5.25 2.60 -68.87 -0.18 5.07 16 13 H 0.00 0.11 7.80 -51.93 -0.40 -0.30 16 14 C -0.13 -3.09 9.19 37.16 0.34 -2.75 16 15 C -0.52 -14.05 8.59 -34.44 -0.30 -14.34 16 16 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 19 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 S 0.14 2.05 23.42 -107.50 -2.52 -0.47 16 24 O -0.17 -2.14 10.68 4.46 0.05 -2.10 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 29 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.18 2.32 8.06 -52.49 -0.42 1.90 16 31 H 0.08 1.40 7.43 -51.93 -0.39 1.01 16 32 H 0.05 0.82 8.05 -51.94 -0.42 0.40 16 33 H 0.34 6.91 8.22 -39.30 -0.32 6.58 16 34 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 35 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -29.87 333.70 -9.18 -39.05 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -4.73 Total: 2.82 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -1.80 Total: -13.92 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.18 Total: -46.50 kcal Atomic # 8 Polarization: -2.14 SS G_CDS: 0.05 Total: -2.10 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.52 Total: -0.47 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.87 -9.18 -39.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560574606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.005 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds