Wall clock time and date at job start Tue Mar 31 2020 06:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34825 * 125.63770 * 2 1 4 4 C 1.40785 * 107.07374 * 179.76395 * 3 2 1 5 5 C 1.36257 * 106.72570 * 0.34835 * 4 3 2 6 6 C 1.47109 * 125.96560 * 179.91019 * 5 4 3 7 7 N 1.30484 * 125.48147 * 359.68276 * 6 5 4 8 8 C 1.31331 * 116.96990 * 180.02562 * 7 6 5 9 9 C 1.33684 * 115.87345 * 359.97438 * 8 7 6 10 10 C 1.50703 * 125.86307 * 180.26623 * 9 8 7 11 11 N 1.46904 * 109.46863 * 89.71597 * 10 9 8 12 12 C 1.46901 * 110.99869 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.46871 * 35.00094 * 12 11 10 14 14 C 1.52999 * 109.47370 * 274.99965 * 12 11 10 15 15 C 1.50694 * 109.47005 * 155.00038 * 12 11 10 16 16 H 1.08001 * 120.00106 * 359.97438 * 15 12 11 17 17 C 1.37881 * 120.00041 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99799 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00138 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46917 * 90.00189 * 19 17 15 21 21 H 1.48503 * 109.47123 * 210.00235 * 19 17 15 22 22 H 1.48497 * 109.47121 * 330.00489 * 19 17 15 23 23 S 1.76171 * 125.48362 * 179.71400 * 6 5 4 24 24 O 1.34275 * 125.64098 * 179.97438 * 2 1 3 25 25 H 1.08993 * 109.46966 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47063 * 300.00159 * 1 2 3 27 27 H 1.08999 * 109.47196 * 60.00074 * 1 2 3 28 28 H 1.07998 * 126.46840 * 359.97438 * 3 2 1 29 29 H 1.08002 * 126.64355 * 180.26490 * 4 3 2 30 30 H 1.07997 * 122.06038 * 180.02562 * 8 7 6 31 31 H 1.09002 * 109.47283 * 209.71144 * 10 9 8 32 32 H 1.08989 * 109.47505 * 329.71658 * 10 9 8 33 33 H 1.00893 * 111.00115 * 303.95278 * 11 10 9 34 34 H 1.08993 * 109.47608 * 179.97438 * 14 12 11 35 35 H 1.08997 * 109.47413 * 300.00211 * 14 12 11 36 36 H 1.09004 * 109.46849 * 59.99713 * 14 12 11 37 37 H 0.96997 * 120.00035 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2925 1.0957 0.0000 4 6 3.6271 0.6475 0.0055 5 6 3.5835 -0.7143 0.0007 6 6 4.7458 -1.6160 0.0020 7 7 5.9955 -1.2407 0.0020 8 6 6.9026 -2.1904 0.0027 9 6 6.4357 -3.4431 0.0038 10 6 7.2718 -4.6969 0.0104 11 7 7.5433 -5.0971 1.3976 12 6 8.3574 -6.3190 1.4433 13 1 9.0618 -6.3175 0.6114 14 6 7.4461 -7.5434 1.3378 15 6 9.1165 -6.3684 2.7442 16 1 9.0055 -5.5716 3.4648 17 6 9.9526 -7.4309 3.0145 18 7 10.0881 -8.4009 2.1368 19 14 10.8941 -7.4919 4.6267 20 1 10.0787 -8.1946 5.6498 21 1 12.1723 -8.2209 4.4263 22 1 11.1797 -6.1089 5.0858 23 16 4.6745 -3.3763 0.0029 24 8 2.2894 -1.0912 0.0005 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.9607 2.1235 -0.0004 29 1 4.5141 1.2638 0.0110 30 1 7.9604 -1.9728 0.0032 31 1 6.7329 -5.4957 -0.4992 32 1 8.2138 -4.5082 -0.5042 33 1 7.9850 -4.3485 1.9100 34 1 8.0501 -8.4500 1.3712 35 1 6.7417 -7.5448 2.1695 36 1 6.8970 -7.5075 0.3968 37 1 10.6766 -9.1482 2.3268 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560574606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:54 Heat of formation + Delta-G solvation = 38.551509 kcal Electronic energy + Delta-G solvation = -19594.115043 eV Core-core repulsion = 16464.124667 eV Total energy + Delta-G solvation = -3129.990376 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.64000 -40.59347 -37.88560 -34.97086 -34.28743 -33.52555 -32.12193 -30.01972 -28.35507 -27.32991 -25.85929 -24.59868 -23.03196 -21.82799 -21.78445 -20.48427 -19.35657 -18.37978 -17.70096 -17.43439 -16.92975 -16.15092 -15.95189 -15.78988 -15.31335 -15.07693 -14.80848 -14.32344 -13.99043 -13.90603 -13.84369 -13.72318 -13.63970 -13.15935 -12.85647 -12.76251 -12.71938 -12.45297 -12.25243 -12.12459 -12.01305 -11.16709 -10.94127 -10.85775 -10.61279 -10.51988 -10.29028 -9.19517 -8.91439 -8.15225 -6.29167 -0.83917 0.11698 0.62316 0.69888 1.41861 1.43035 1.46239 1.48014 1.52934 1.94697 2.40588 3.13774 3.22452 3.58023 3.78525 3.93412 3.94596 3.98452 4.13272 4.54471 4.57251 4.65811 4.68361 4.76947 4.77745 4.83451 5.00165 5.04340 5.06345 5.16980 5.17339 5.42364 5.52322 5.63864 5.81739 5.96780 6.19322 6.38054 6.51934 6.68012 6.93108 7.41058 8.90344 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.033109 B = 0.002777 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.493849 B =10080.952950 C =10191.592986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.011 3.989 3 C -0.219 4.219 4 C -0.132 4.132 5 C 0.000 4.000 6 C 0.118 3.882 7 N -0.465 5.465 8 C 0.036 3.964 9 C -0.194 4.194 10 C 0.137 3.863 11 N -0.684 5.684 12 C 0.217 3.783 13 H -0.021 1.021 14 C -0.116 4.116 15 C -0.538 4.538 16 H 0.058 0.942 17 C 0.015 3.985 18 N -0.916 5.916 19 Si 0.962 3.038 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.268 1.268 23 S 0.132 5.868 24 O -0.184 6.184 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.187 0.813 29 H 0.164 0.836 30 H 0.195 0.805 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.336 0.664 34 H 0.059 0.941 35 H 0.026 0.974 36 H 0.023 0.977 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.456 17.839 -6.401 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.041 4.041 3 C -0.238 4.238 4 C -0.156 4.156 5 C -0.052 4.052 6 C -0.154 4.154 7 N -0.180 5.180 8 C -0.117 4.117 9 C -0.316 4.316 10 C 0.006 3.994 11 N -0.315 5.315 12 C 0.109 3.891 13 H -0.003 1.003 14 C -0.174 4.174 15 C -0.576 4.576 16 H 0.076 0.924 17 C -0.184 4.184 18 N -0.555 5.555 19 Si 0.787 3.213 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.193 1.193 23 S 0.390 5.610 24 O -0.082 6.082 25 H 0.098 0.902 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.204 0.796 29 H 0.181 0.819 30 H 0.212 0.788 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.154 0.846 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.710 16.738 -6.368 25.899 hybrid contribution 2.682 0.074 0.491 2.727 sum -16.028 16.811 -5.877 23.960 Atomic orbital electron populations 1.20642 0.81448 1.05213 1.05916 1.23614 0.95739 0.83112 1.01627 1.21922 0.91086 1.01211 1.09600 1.22163 0.99915 0.92025 1.01493 1.18604 0.80509 0.91915 1.14188 1.24131 0.92219 0.93034 1.06053 1.66517 0.98477 1.36555 1.16488 1.21781 1.00939 0.86064 1.02870 1.25953 0.96109 0.99911 1.09654 1.20247 0.96293 0.91009 0.91893 1.60715 1.52329 1.07534 1.10967 1.18932 0.88829 0.86545 0.94759 1.00297 1.21576 0.98028 1.00689 0.97133 1.21545 1.25366 1.07125 1.03596 0.92358 1.25698 0.97484 0.95112 1.00148 1.70007 1.38478 1.10646 1.36385 0.85502 0.77845 0.78305 0.79632 1.20282 1.20798 1.19260 1.85027 1.03924 1.04232 1.67857 1.84008 1.15224 1.36568 1.72349 0.90186 0.87169 0.86999 0.79614 0.81880 0.78843 0.90535 0.92692 0.84616 0.92190 0.95495 0.95797 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.41 71.23 0.74 0.17 16 2 C 0.01 0.19 7.31 24.90 0.18 0.37 16 3 C -0.22 -3.60 10.78 22.11 0.24 -3.36 16 4 C -0.13 -2.94 10.80 22.43 0.24 -2.70 16 5 C 0.00 0.01 7.22 24.14 0.17 0.18 16 6 C 0.12 3.57 7.46 87.22 0.65 4.22 16 7 N -0.46 -14.37 10.52 -190.41 -2.00 -16.37 16 8 C 0.04 1.07 11.14 83.73 0.93 2.00 16 9 C -0.19 -6.15 6.10 24.65 0.15 -6.00 16 10 C 0.14 4.80 6.01 85.56 0.51 5.32 16 11 N -0.68 -28.82 6.29 -499.46 -3.14 -31.96 16 12 C 0.22 10.93 2.60 44.17 0.11 11.04 16 13 H -0.02 -1.12 7.80 -2.38 -0.02 -1.13 16 14 C -0.12 -5.76 9.19 71.98 0.66 -5.09 16 15 C -0.54 -29.33 8.59 25.60 0.22 -29.11 16 16 H 0.06 3.13 7.62 -2.91 -0.02 3.11 16 17 C 0.02 0.83 5.30 84.66 0.45 1.28 16 18 N -0.92 -52.23 11.32 21.45 0.24 -51.99 16 19 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 S 0.13 3.99 23.42 -56.49 -1.32 2.67 16 24 O -0.18 -4.55 10.68 -6.97 -0.07 -4.63 16 25 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 29 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.19 4.93 8.06 -2.91 -0.02 4.90 16 31 H 0.08 2.71 7.43 -2.39 -0.02 2.69 16 32 H 0.06 1.86 8.05 -2.39 -0.02 1.84 16 33 H 0.34 13.94 8.22 -89.70 -0.74 13.21 16 34 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 35 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.02 1.04 7.45 -2.38 -0.02 1.02 16 37 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -64.26 333.70 1.35 -62.91 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.36 Total: 15.72 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 5.27 Total: -21.68 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -4.90 Total: -100.32 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.07 Total: -4.63 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.32 Total: 2.67 kcal Total: -64.26 1.35 -62.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560574606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.457 kcal (2) G-P(sol) polarization free energy of solvation -64.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds