Wall clock time and date at job start Tue Mar 31 2020 06:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34822 * 125.63316 * 2 1 4 4 C 1.40790 * 107.07386 * 179.76039 * 3 2 1 5 5 C 1.36258 * 106.72082 * 0.34923 * 4 3 2 6 6 C 1.47109 * 125.96228 * 179.90922 * 5 4 3 7 7 N 1.30484 * 125.48094 * 359.67773 * 6 5 4 8 8 C 1.31329 * 116.96746 * 179.79031 * 7 6 5 9 9 C 1.33683 * 115.87786 * 0.45378 * 8 7 6 10 10 C 1.50705 * 125.86947 * 179.84201 * 9 8 7 11 11 N 1.46898 * 109.46661 * 89.71920 * 10 9 8 12 12 C 1.46906 * 110.99888 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.46727 * 325.00012 * 12 11 10 14 14 C 1.52995 * 109.46889 * 85.00162 * 12 11 10 15 15 C 1.50706 * 109.47211 * 204.99964 * 12 11 10 16 16 H 1.08001 * 119.99930 * 0.02562 * 15 12 11 17 17 C 1.37871 * 119.99762 * 180.02562 * 15 12 11 18 18 N 1.31518 * 120.00279 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99682 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47299 * 60.00109 * 19 17 15 21 21 H 1.48506 * 109.47208 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47183 * 299.99603 * 19 17 15 23 23 S 1.76177 * 125.48437 * 179.71682 * 6 5 4 24 24 O 1.34277 * 125.64448 * 179.97438 * 2 1 3 25 25 H 1.09004 * 109.46381 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47618 * 299.99637 * 1 2 3 27 27 H 1.08997 * 109.47530 * 60.00513 * 1 2 3 28 28 H 1.07997 * 126.46834 * 359.97438 * 3 2 1 29 29 H 1.08001 * 126.64349 * 180.26018 * 4 3 2 30 30 H 1.08003 * 122.06427 * 180.26522 * 8 7 6 31 31 H 1.08995 * 109.47155 * 329.71969 * 10 9 8 32 32 H 1.08997 * 109.47111 * 209.71890 * 10 9 8 33 33 H 1.00902 * 111.00533 * 56.04452 * 11 10 9 34 34 H 1.09003 * 109.47335 * 299.99780 * 14 12 11 35 35 H 1.09002 * 109.47311 * 59.99901 * 14 12 11 36 36 H 1.09002 * 109.46959 * 180.02562 * 14 12 11 37 37 H 0.96995 * 120.00082 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2925 1.0958 0.0000 4 6 3.6271 0.6477 0.0056 5 6 3.5834 -0.7142 0.0008 6 6 4.7458 -1.6158 0.0021 7 7 5.9955 -1.2405 0.0021 8 6 6.9026 -2.1901 0.0077 9 6 6.4359 -3.4428 0.0032 10 6 7.2720 -4.6967 0.0047 11 7 7.5430 -5.1028 1.3901 12 6 8.3582 -6.3243 1.4308 13 1 8.0824 -6.9729 0.5993 14 6 9.8383 -5.9534 1.3193 15 6 8.1177 -7.0457 2.7319 16 1 7.4279 -6.6378 3.4560 17 6 8.7783 -8.2263 2.9978 18 7 9.6179 -8.7232 2.1158 19 14 8.4796 -9.1208 4.6103 20 1 7.0431 -9.4815 4.7176 21 1 9.3038 -10.3555 4.6515 22 1 8.8542 -8.2371 5.7434 23 16 4.6746 -3.3762 0.0030 24 8 2.2895 -1.0912 0.0005 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.9605 2.1235 -0.0004 29 1 4.5140 1.2640 0.0111 30 1 7.9605 -1.9725 0.0124 31 1 8.2142 -4.5057 -0.5089 32 1 6.7333 -5.4931 -0.5087 33 1 6.6844 -5.2234 1.9062 34 1 10.0123 -5.4316 0.3782 35 1 10.1140 -5.3047 2.1508 36 1 10.4432 -6.8597 1.3490 37 1 10.0823 -9.5539 2.3028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560574607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:57 Heat of formation + Delta-G solvation = 57.384116 kcal Electronic energy + Delta-G solvation = -19596.497083 eV Core-core repulsion = 16467.323349 eV Total energy + Delta-G solvation = -3129.173733 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.79217 -39.40597 -36.15803 -33.49915 -33.26444 -32.42659 -30.71966 -28.71720 -27.08822 -25.33989 -24.68632 -23.29128 -22.08065 -20.96631 -19.88317 -19.49323 -18.02630 -16.82856 -16.55947 -16.41354 -15.26336 -14.91003 -14.44341 -14.33021 -14.04234 -13.66118 -13.54663 -13.38357 -13.23771 -13.12220 -13.03804 -12.31515 -12.21106 -12.03392 -11.33064 -11.13700 -10.87865 -10.82967 -10.40679 -10.27813 -10.19083 -10.11041 -9.70634 -9.50226 -9.18739 -8.91382 -8.52885 -7.96800 -7.43402 -6.07992 -4.15027 0.26075 1.24506 1.62787 1.74727 2.31594 2.35783 3.07896 3.28655 3.33062 3.36135 4.10944 4.36273 4.57963 4.76457 4.90296 5.00628 5.08146 5.08302 5.23000 5.30853 5.32702 5.51649 5.56827 5.70274 5.80030 6.02130 6.06576 6.20168 6.27894 6.78795 6.80531 7.05582 7.13151 7.39000 7.67756 7.71309 7.80069 8.18247 8.25864 8.53230 8.93332 9.51183 10.98246 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027997 B = 0.002919 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.876036 B = 9591.090667 C =10209.524859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.004 3.996 3 C -0.214 4.214 4 C -0.140 4.140 5 C 0.045 3.955 6 C 0.116 3.884 7 N -0.445 5.445 8 C 0.042 3.958 9 C -0.175 4.175 10 C 0.130 3.870 11 N -0.681 5.681 12 C 0.212 3.788 13 H 0.003 0.997 14 C -0.126 4.126 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.063 3.937 18 N -0.890 5.890 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 S 0.108 5.892 24 O -0.167 6.167 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.182 0.818 31 H 0.091 0.909 32 H 0.036 0.964 33 H 0.333 0.667 34 H 0.005 0.995 35 H 0.033 0.967 36 H 0.082 0.918 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.110 16.541 -6.683 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.048 4.048 3 C -0.233 4.233 4 C -0.164 4.164 5 C -0.008 4.008 6 C -0.157 4.157 7 N -0.161 5.161 8 C -0.109 4.109 9 C -0.296 4.296 10 C -0.002 4.002 11 N -0.313 5.313 12 C 0.105 3.895 13 H 0.021 0.979 14 C -0.184 4.184 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.201 1.201 23 S 0.365 5.635 24 O -0.063 6.063 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.172 0.828 29 H 0.177 0.823 30 H 0.199 0.801 31 H 0.109 0.891 32 H 0.054 0.946 33 H 0.150 0.850 34 H 0.024 0.976 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.188 16.211 -6.649 23.188 hybrid contribution 0.281 -0.883 0.644 1.128 sum -14.907 15.328 -6.005 22.209 Atomic orbital electron populations 1.20372 0.84603 1.04378 1.03819 1.22632 0.94043 0.83770 1.04403 1.21549 0.92385 0.99647 1.09734 1.21863 0.98445 0.92593 1.03495 1.18561 0.80310 0.91427 1.10540 1.23725 0.91734 0.92370 1.07898 1.66475 0.98187 1.36557 1.14862 1.21502 1.00151 0.86165 1.03115 1.26267 0.94944 1.00989 1.07444 1.20412 0.96606 0.89235 0.93909 1.60865 1.22602 1.39347 1.08512 1.19156 0.90189 0.83700 0.96452 0.97905 1.21733 0.99180 1.00981 0.96496 1.21193 1.25767 1.06364 1.02661 0.92211 1.24908 0.94900 0.97081 0.97002 1.69878 1.27606 1.20567 1.34740 0.86559 0.78178 0.78917 0.83757 1.20285 1.21237 1.20125 1.85117 1.04873 1.04869 1.68691 1.84007 1.15345 1.35078 1.71889 0.90334 0.89304 0.89344 0.82789 0.82342 0.80116 0.89093 0.94552 0.85006 0.97600 0.94781 0.89933 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.41 36.01 0.37 -0.03 16 2 C 0.00 0.04 7.31 -35.52 -0.26 -0.22 16 3 C -0.21 -2.04 10.78 -39.83 -0.43 -2.47 16 4 C -0.14 -1.66 10.80 -39.33 -0.42 -2.08 16 5 C 0.04 0.61 7.22 -36.70 -0.26 0.35 16 6 C 0.12 1.75 7.46 -14.53 -0.11 1.64 16 7 N -0.45 -6.99 10.52 -11.54 -0.12 -7.11 16 8 C 0.04 0.65 11.14 -19.36 -0.22 0.44 16 9 C -0.17 -2.77 6.10 -35.90 -0.22 -2.99 16 10 C 0.13 2.28 6.01 -4.97 -0.03 2.25 16 11 N -0.68 -14.33 6.29 -109.22 -0.69 -15.02 16 12 C 0.21 5.26 2.60 -68.86 -0.18 5.08 16 13 H 0.00 0.09 7.80 -51.93 -0.41 -0.32 16 14 C -0.13 -3.05 9.19 37.16 0.34 -2.71 16 15 C -0.52 -14.16 8.59 -34.44 -0.30 -14.46 16 16 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 18 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 19 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 S 0.11 1.60 23.42 -107.50 -2.52 -0.91 16 24 O -0.17 -2.14 10.68 4.47 0.05 -2.09 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 29 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.18 2.47 8.06 -52.48 -0.42 2.05 16 31 H 0.09 1.54 7.43 -51.93 -0.39 1.16 16 32 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 33 H 0.33 7.00 8.22 -39.29 -0.32 6.68 16 34 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 35 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -29.80 333.70 -9.18 -38.98 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.73 Total: 3.03 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -1.80 Total: -13.57 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.18 Total: -46.59 kcal Atomic # 8 Polarization: -2.14 SS G_CDS: 0.05 Total: -2.09 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.52 Total: -0.91 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.80 -9.18 -38.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560574607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.362 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds