Wall clock time and date at job start Tue Mar 31 2020 06:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34822 * 125.63316 * 2 1 4 4 C 1.40790 * 107.07386 * 179.76039 * 3 2 1 5 5 C 1.36258 * 106.72082 * 0.34923 * 4 3 2 6 6 C 1.47109 * 125.96228 * 179.90922 * 5 4 3 7 7 N 1.30484 * 125.48094 * 359.67773 * 6 5 4 8 8 C 1.31329 * 116.96746 * 179.79031 * 7 6 5 9 9 C 1.33683 * 115.87786 * 0.45378 * 8 7 6 10 10 C 1.50705 * 125.86947 * 179.84201 * 9 8 7 11 11 N 1.46898 * 109.46661 * 89.71920 * 10 9 8 12 12 C 1.46906 * 110.99888 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.46727 * 325.00012 * 12 11 10 14 14 C 1.52995 * 109.46889 * 85.00162 * 12 11 10 15 15 C 1.50706 * 109.47211 * 204.99964 * 12 11 10 16 16 H 1.08001 * 119.99930 * 0.02562 * 15 12 11 17 17 C 1.37871 * 119.99762 * 180.02562 * 15 12 11 18 18 N 1.31518 * 120.00279 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99682 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47299 * 60.00109 * 19 17 15 21 21 H 1.48506 * 109.47208 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47183 * 299.99603 * 19 17 15 23 23 S 1.76177 * 125.48437 * 179.71682 * 6 5 4 24 24 O 1.34277 * 125.64448 * 179.97438 * 2 1 3 25 25 H 1.09004 * 109.46381 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47618 * 299.99637 * 1 2 3 27 27 H 1.08997 * 109.47530 * 60.00513 * 1 2 3 28 28 H 1.07997 * 126.46834 * 359.97438 * 3 2 1 29 29 H 1.08001 * 126.64349 * 180.26018 * 4 3 2 30 30 H 1.08003 * 122.06427 * 180.26522 * 8 7 6 31 31 H 1.08995 * 109.47155 * 329.71969 * 10 9 8 32 32 H 1.08997 * 109.47111 * 209.71890 * 10 9 8 33 33 H 1.00902 * 111.00533 * 56.04452 * 11 10 9 34 34 H 1.09003 * 109.47335 * 299.99780 * 14 12 11 35 35 H 1.09002 * 109.47311 * 59.99901 * 14 12 11 36 36 H 1.09002 * 109.46959 * 180.02562 * 14 12 11 37 37 H 0.96995 * 120.00082 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2925 1.0958 0.0000 4 6 3.6271 0.6477 0.0056 5 6 3.5834 -0.7142 0.0008 6 6 4.7458 -1.6158 0.0021 7 7 5.9955 -1.2405 0.0021 8 6 6.9026 -2.1901 0.0077 9 6 6.4359 -3.4428 0.0032 10 6 7.2720 -4.6967 0.0047 11 7 7.5430 -5.1028 1.3901 12 6 8.3582 -6.3243 1.4308 13 1 8.0824 -6.9729 0.5993 14 6 9.8383 -5.9534 1.3193 15 6 8.1177 -7.0457 2.7319 16 1 7.4279 -6.6378 3.4560 17 6 8.7783 -8.2263 2.9978 18 7 9.6179 -8.7232 2.1158 19 14 8.4796 -9.1208 4.6103 20 1 7.0431 -9.4815 4.7176 21 1 9.3038 -10.3555 4.6515 22 1 8.8542 -8.2371 5.7434 23 16 4.6746 -3.3762 0.0030 24 8 2.2895 -1.0912 0.0005 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.9605 2.1235 -0.0004 29 1 4.5140 1.2640 0.0111 30 1 7.9605 -1.9725 0.0124 31 1 8.2142 -4.5057 -0.5089 32 1 6.7333 -5.4931 -0.5087 33 1 6.6844 -5.2234 1.9062 34 1 10.0123 -5.4316 0.3782 35 1 10.1140 -5.3047 2.1508 36 1 10.4432 -6.8597 1.3490 37 1 10.0823 -9.5539 2.3028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560574607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:56 Heat of formation + Delta-G solvation = 39.020731 kcal Electronic energy + Delta-G solvation = -19597.293379 eV Core-core repulsion = 16467.323349 eV Total energy + Delta-G solvation = -3129.970029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.65067 -40.58996 -37.89497 -34.97142 -34.29699 -33.53745 -32.12021 -30.05472 -28.36256 -27.31213 -25.82443 -24.59335 -23.05804 -21.82274 -21.79907 -20.55528 -19.29183 -18.44474 -17.74180 -17.44484 -16.90364 -16.23651 -15.80789 -15.63908 -15.44360 -15.08339 -14.89358 -14.32973 -13.99411 -13.91962 -13.88384 -13.73736 -13.63913 -13.11369 -12.85457 -12.75387 -12.74061 -12.42990 -12.25506 -12.15603 -11.97464 -11.17242 -10.97053 -10.88266 -10.61733 -10.53204 -10.31797 -9.19225 -8.93985 -8.15615 -6.29968 -0.85539 0.08067 0.56525 0.69340 1.41668 1.43237 1.44979 1.48028 1.50971 1.94911 2.40088 3.13095 3.21457 3.59052 3.79037 3.85902 3.94637 3.97739 4.15142 4.53762 4.58682 4.66070 4.72352 4.76224 4.77150 4.84543 4.99679 5.06038 5.08518 5.16626 5.18234 5.43858 5.51575 5.62810 5.82276 5.95948 6.20002 6.35913 6.51619 6.65610 6.90568 7.40236 8.89623 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027997 B = 0.002919 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.876036 B = 9591.090667 C =10209.524859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.012 3.988 3 C -0.219 4.219 4 C -0.130 4.130 5 C -0.001 4.001 6 C 0.126 3.874 7 N -0.465 5.465 8 C 0.049 3.951 9 C -0.197 4.197 10 C 0.138 3.862 11 N -0.680 5.680 12 C 0.217 3.783 13 H -0.024 1.024 14 C -0.115 4.115 15 C -0.542 4.542 16 H 0.057 0.943 17 C 0.016 3.984 18 N -0.915 5.915 19 Si 0.961 3.039 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.272 1.272 23 S 0.111 5.889 24 O -0.184 6.184 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.187 0.813 29 H 0.164 0.836 30 H 0.196 0.804 31 H 0.097 0.903 32 H 0.034 0.966 33 H 0.331 0.669 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.058 0.942 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.954 18.250 -6.369 25.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.041 4.041 3 C -0.238 4.238 4 C -0.154 4.154 5 C -0.053 4.053 6 C -0.147 4.147 7 N -0.180 5.180 8 C -0.103 4.103 9 C -0.318 4.318 10 C 0.007 3.993 11 N -0.311 5.311 12 C 0.109 3.891 13 H -0.006 1.006 14 C -0.173 4.173 15 C -0.580 4.580 16 H 0.075 0.925 17 C -0.184 4.184 18 N -0.554 5.554 19 Si 0.786 3.214 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.198 1.198 23 S 0.368 5.632 24 O -0.082 6.082 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.204 0.796 29 H 0.182 0.818 30 H 0.212 0.788 31 H 0.115 0.885 32 H 0.052 0.948 33 H 0.148 0.852 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.033 17.922 -6.343 25.526 hybrid contribution 0.673 -1.238 0.494 1.493 sum -16.360 16.685 -5.849 24.088 Atomic orbital electron populations 1.20646 0.81453 1.05198 1.05933 1.23617 0.95735 0.83117 1.01582 1.21928 0.91073 1.01223 1.09569 1.22175 0.99942 0.91997 1.01319 1.18598 0.80495 0.91915 1.14336 1.24100 0.92235 0.92579 1.05772 1.66539 0.98435 1.36548 1.16496 1.21746 1.00874 0.85947 1.01696 1.25952 0.95341 1.00355 1.10152 1.20289 0.97321 0.89912 0.91795 1.60763 1.22380 1.37112 1.10854 1.18954 0.91055 0.84556 0.94581 1.00619 1.21560 0.98430 0.99864 0.97472 1.21531 1.25870 1.07058 1.03561 0.92491 1.25690 0.94649 0.97844 1.00171 1.70000 1.28210 1.20869 1.36326 0.85569 0.78255 0.77744 0.79803 1.19643 1.20756 1.19753 1.85028 1.04192 1.05154 1.68871 1.84007 1.15220 1.36578 1.72366 0.90218 0.87144 0.86993 0.79575 0.81811 0.78782 0.88493 0.94826 0.85211 0.95283 0.95305 0.92310 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.41 71.24 0.74 0.18 16 2 C 0.01 0.20 7.31 24.90 0.18 0.38 16 3 C -0.22 -3.56 10.78 22.11 0.24 -3.32 16 4 C -0.13 -2.88 10.80 22.43 0.24 -2.64 16 5 C 0.00 -0.03 7.22 24.14 0.17 0.15 16 6 C 0.13 3.79 7.46 87.22 0.65 4.44 16 7 N -0.46 -14.44 10.52 -190.41 -2.00 -16.44 16 8 C 0.05 1.50 11.14 83.73 0.93 2.43 16 9 C -0.20 -6.25 6.10 24.65 0.15 -6.10 16 10 C 0.14 4.88 6.01 85.56 0.51 5.40 16 11 N -0.68 -28.88 6.29 -499.45 -3.14 -32.02 16 12 C 0.22 10.93 2.60 44.17 0.11 11.05 16 13 H -0.02 -1.31 7.80 -2.39 -0.02 -1.32 16 14 C -0.11 -5.63 9.19 71.98 0.66 -4.97 16 15 C -0.54 -29.79 8.59 25.60 0.22 -29.57 16 16 H 0.06 3.09 7.62 -2.91 -0.02 3.07 16 17 C 0.02 0.89 5.30 84.65 0.45 1.34 16 18 N -0.92 -52.28 11.32 21.45 0.24 -52.03 16 19 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 S 0.11 3.30 23.42 -56.49 -1.32 1.97 16 24 O -0.18 -4.53 10.68 -6.91 -0.07 -4.60 16 25 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 29 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 30 H 0.20 5.17 8.06 -2.91 -0.02 5.15 16 31 H 0.10 3.27 7.43 -2.39 -0.02 3.25 16 32 H 0.03 1.21 8.06 -2.39 -0.02 1.19 16 33 H 0.33 14.14 8.22 -89.69 -0.74 13.40 16 34 H 0.03 1.23 7.45 -2.39 -0.02 1.22 16 35 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 37 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -64.24 333.70 1.35 -62.89 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.36 Total: 16.04 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 5.27 Total: -21.24 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -4.90 Total: -100.50 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.07 Total: -4.60 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.32 Total: 1.97 kcal Total: -64.24 1.35 -62.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560574607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.907 kcal (2) G-P(sol) polarization free energy of solvation -64.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds