Wall clock time and date at job start Tue Mar 31 2020 06:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47233 * 134.99469 * 3 2 1 5 5 N 1.46497 * 109.47093 * 180.02562 * 4 3 2 6 6 C 1.46501 * 120.00111 * 88.59579 * 5 4 3 7 7 C 1.50702 * 109.46932 * 90.57581 * 6 5 4 8 8 H 1.07997 * 119.99848 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99669 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00081 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99701 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47270 * 59.99833 * 11 9 7 13 13 H 1.48499 * 109.47294 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47237 * 299.99613 * 11 9 7 15 15 C 1.34778 * 119.99781 * 268.59580 * 5 4 3 16 16 O 1.21630 * 120.00073 * 6.15880 * 15 5 4 17 17 C 1.47209 * 119.99943 * 186.15738 * 15 5 4 18 18 C 1.37014 * 126.63786 * 187.71803 * 17 15 5 19 19 C 1.40958 * 105.46249 * 179.97438 * 18 17 15 20 20 C 1.47636 * 126.28083 * 179.97438 * 19 18 17 21 21 O 1.21484 * 119.99579 * 0.02562 * 20 19 18 22 22 O 1.34709 * 120.00249 * 180.02562 * 20 19 18 23 23 N 1.32000 * 107.44571 * 0.02562 * 19 18 17 24 24 N 1.28454 * 110.48632 * 359.70895 * 23 19 18 25 25 H 0.97001 * 125.05689 * 180.28084 * 24 23 19 26 26 H 1.09001 * 109.47034 * 14.99307 * 3 2 1 27 27 H 1.09000 * 109.46601 * 255.00002 * 3 2 1 28 28 H 1.08994 * 109.46893 * 60.00089 * 4 3 2 29 29 H 1.08998 * 109.46935 * 300.00212 * 4 3 2 30 30 H 1.09005 * 109.46625 * 210.57631 * 6 5 4 31 31 H 1.08997 * 109.46912 * 330.57421 * 6 5 4 32 32 H 0.96997 * 119.99514 * 180.02562 * 10 9 7 33 33 H 1.07998 * 127.27066 * 0.02562 * 18 17 15 34 34 H 0.96704 * 117.00405 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 1.0208 -1.0201 5 7 4.5825 1.0210 -1.0205 6 6 5.3149 0.1023 -1.8956 7 6 5.5780 0.7723 -3.2196 8 1 5.2337 1.7812 -3.3921 9 6 6.2573 0.0966 -4.2111 10 7 6.6762 -1.1322 -4.0012 11 14 6.5828 0.9268 -5.8525 12 1 7.3914 2.1533 -5.6353 13 1 7.3253 -0.0043 -6.7396 14 1 5.2909 1.2917 -6.4875 15 6 5.2565 1.8664 -0.2158 16 8 4.6537 2.5489 0.5905 17 6 6.7222 1.9635 -0.3126 18 6 7.5528 2.6581 0.5269 19 6 8.8539 2.4477 0.0271 20 6 10.1049 2.9929 0.5903 21 8 10.0694 3.6967 1.5799 22 8 11.2858 2.7098 0.0071 23 7 8.7485 1.6748 -1.0378 24 7 7.5188 1.3734 -1.2546 25 1 7.2021 0.8128 -1.9801 26 1 2.9718 -0.9919 -0.2659 27 1 2.9711 0.2668 0.9927 28 1 2.7538 2.0132 -0.7542 29 1 2.7543 0.7546 -2.0127 30 1 6.2630 -0.1655 -1.4291 31 1 4.7215 -0.7979 -2.0554 32 1 7.1544 -1.6073 -4.6986 33 1 7.2705 3.2426 1.3901 34 1 12.0777 3.0891 0.4122 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574481143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:40 Heat of formation + Delta-G solvation = -14.462245 kcal Electronic energy + Delta-G solvation = -22828.264436 eV Core-core repulsion = 19149.681997 eV Total energy + Delta-G solvation = -3678.582440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.42186 -39.76982 -39.22029 -36.78880 -35.96256 -35.74539 -33.52873 -32.05516 -31.26193 -30.28476 -27.85958 -25.09060 -24.50833 -23.69260 -21.85617 -20.45846 -19.95755 -17.90342 -17.77138 -17.35343 -16.94969 -16.54498 -15.88817 -15.76154 -15.40174 -14.97863 -14.84935 -14.38770 -14.23696 -13.48291 -13.47251 -13.24216 -13.09646 -12.79576 -12.47559 -12.36743 -11.88930 -11.65206 -11.47572 -11.38020 -11.09993 -10.86879 -10.84783 -10.72184 -10.53958 -10.27391 -9.74786 -9.27024 -9.02277 -8.98649 -8.31328 -6.71063 -4.88501 1.54961 1.64949 2.73383 2.85623 2.92385 3.01185 3.08017 3.08922 3.20709 3.31033 3.54745 3.68433 3.96058 4.21504 4.61742 4.73523 4.84088 5.14996 5.16380 5.51396 5.53359 5.66440 5.80619 5.92374 6.02576 6.08274 6.47096 6.49651 6.51814 6.90636 7.25026 7.34525 7.43694 7.61086 7.70681 7.95296 8.18213 8.29201 8.44047 8.86176 10.31502 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.006154 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.036088 B = 4549.153563 C = 6745.897559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.220 3.780 3 C -0.047 4.047 4 C 0.129 3.871 5 N -0.592 5.592 6 C 0.214 3.786 7 C -0.579 4.579 8 H 0.075 0.925 9 C 0.071 3.929 10 N -0.872 5.872 11 Si 0.902 3.098 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.270 1.270 15 C 0.593 3.407 16 O -0.541 6.541 17 C -0.029 4.029 18 C -0.108 4.108 19 C -0.043 4.043 20 C 0.581 3.419 21 O -0.515 6.515 22 O -0.501 6.501 23 N -0.208 5.208 24 N -0.322 5.322 25 H 0.476 0.524 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.278 0.722 33 H 0.171 0.829 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.502 1.499 4.298 5.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.098 4.098 3 C -0.088 4.088 4 C 0.004 3.996 5 N -0.322 5.322 6 C 0.093 3.907 7 C -0.617 4.617 8 H 0.093 0.907 9 C -0.137 4.137 10 N -0.507 5.507 11 Si 0.728 3.272 12 H -0.194 1.194 13 H -0.205 1.205 14 H -0.195 1.195 15 C 0.380 3.620 16 O -0.419 6.419 17 C -0.157 4.157 18 C -0.137 4.137 19 C -0.195 4.195 20 C 0.423 3.577 21 O -0.402 6.402 22 O -0.311 6.311 23 N -0.052 5.052 24 N -0.062 5.062 25 H 0.345 0.655 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.188 0.812 34 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 1.836 1.175 3.906 4.473 hybrid contribution 0.640 0.536 -0.586 1.020 sum 2.475 1.711 3.319 4.480 Atomic orbital electron populations 1.81192 1.13042 1.09087 1.09068 1.29034 0.95048 0.92859 0.92877 1.19771 0.81496 1.03680 1.03854 1.21202 0.80036 0.99303 0.99078 1.48013 1.06020 1.37814 1.40388 1.19886 0.92498 0.89805 0.88508 1.21626 1.39518 1.02204 0.98360 0.90685 1.25112 0.94471 0.94712 0.99412 1.69883 1.35249 1.10197 1.35359 0.86426 0.79115 0.79654 0.82026 1.19401 1.20475 1.19454 1.16947 0.84306 0.79948 0.80822 1.90783 1.68328 1.45429 1.37328 1.21331 0.93365 1.04919 0.96051 1.21663 0.89076 1.01618 1.01307 1.20447 0.92082 1.07859 0.99127 1.19252 0.82306 0.76241 0.79875 1.90893 1.87416 1.36442 1.25424 1.84679 1.16858 1.71496 1.58050 1.73691 1.03361 1.12732 1.15450 1.46493 1.01871 1.34279 1.23593 0.65502 0.86898 0.86972 0.89423 0.88756 0.94627 0.92337 0.91167 0.81151 0.73132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.93 18.54 42.15 0.78 -6.14 16 2 C 0.22 2.85 15.43 -20.76 -0.32 2.53 16 3 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 4 C 0.13 1.76 5.33 -4.04 -0.02 1.74 16 5 N -0.59 -9.79 2.46 -176.41 -0.43 -10.22 16 6 C 0.21 3.98 4.67 -5.19 -0.02 3.96 16 7 C -0.58 -12.20 7.43 -34.44 -0.26 -12.45 16 8 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.07 1.57 5.12 -17.82 -0.09 1.47 16 10 N -0.87 -19.94 13.29 55.43 0.74 -19.21 16 11 Si 0.90 17.97 29.54 -169.99 -5.02 12.95 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 13 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 14 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 15 C 0.59 10.62 7.64 -12.62 -0.10 10.53 16 16 O -0.54 -10.28 16.53 5.25 0.09 -10.19 16 17 C -0.03 -0.54 6.65 -82.47 -0.55 -1.09 16 18 C -0.11 -1.86 10.56 -39.00 -0.41 -2.27 16 19 C -0.04 -0.74 7.13 -82.93 -0.59 -1.34 16 20 C 0.58 9.01 8.34 34.57 0.29 9.30 16 21 O -0.51 -8.64 17.70 -19.25 -0.34 -8.98 16 22 O -0.50 -6.24 13.44 -40.51 -0.54 -6.78 16 23 N -0.21 -3.95 12.22 33.32 0.41 -3.55 16 24 N -0.32 -6.18 5.76 33.26 0.19 -5.99 16 25 H 0.48 9.62 3.37 -190.45 -0.64 8.97 16 26 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.09 1.22 7.47 -51.93 -0.39 0.83 16 29 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 30 H 0.04 0.71 5.18 -51.93 -0.27 0.44 16 31 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 32 H 0.28 6.16 8.31 -40.82 -0.34 5.82 16 33 H 0.17 2.67 8.06 -52.49 -0.42 2.25 16 34 H 0.41 2.72 9.11 45.56 0.42 3.13 16 LS Contribution 316.87 15.07 4.78 4.78 Total: -1.00 -27.10 316.87 -4.15 -31.25 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -2.54 Total: 10.41 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: -2.25 Total: 11.68 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 1.68 Total: -45.11 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.80 Total: -25.96 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.02 Total: 12.95 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.10 -4.15 -31.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574481143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.788 kcal (2) G-P(sol) polarization free energy of solvation -27.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds