Wall clock time and date at job start Tue Mar 31 2020 06:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47233 * 134.99469 * 3 2 1 5 5 N 1.46497 * 109.47093 * 180.02562 * 4 3 2 6 6 C 1.46501 * 120.00111 * 88.59579 * 5 4 3 7 7 C 1.50702 * 109.46932 * 90.57581 * 6 5 4 8 8 H 1.07997 * 119.99848 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99669 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00081 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99701 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47270 * 59.99833 * 11 9 7 13 13 H 1.48499 * 109.47294 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47237 * 299.99613 * 11 9 7 15 15 C 1.34778 * 119.99781 * 268.59580 * 5 4 3 16 16 O 1.21630 * 120.00073 * 6.15880 * 15 5 4 17 17 C 1.47209 * 119.99943 * 186.15738 * 15 5 4 18 18 C 1.37014 * 126.63786 * 187.71803 * 17 15 5 19 19 C 1.40958 * 105.46249 * 179.97438 * 18 17 15 20 20 C 1.47636 * 126.28083 * 179.97438 * 19 18 17 21 21 O 1.21484 * 119.99579 * 0.02562 * 20 19 18 22 22 O 1.34709 * 120.00249 * 180.02562 * 20 19 18 23 23 N 1.32000 * 107.44571 * 0.02562 * 19 18 17 24 24 N 1.28454 * 110.48632 * 359.70895 * 23 19 18 25 25 H 0.97001 * 125.05689 * 180.28084 * 24 23 19 26 26 H 1.09001 * 109.47034 * 14.99307 * 3 2 1 27 27 H 1.09000 * 109.46601 * 255.00002 * 3 2 1 28 28 H 1.08994 * 109.46893 * 60.00089 * 4 3 2 29 29 H 1.08998 * 109.46935 * 300.00212 * 4 3 2 30 30 H 1.09005 * 109.46625 * 210.57631 * 6 5 4 31 31 H 1.08997 * 109.46912 * 330.57421 * 6 5 4 32 32 H 0.96997 * 119.99514 * 180.02562 * 10 9 7 33 33 H 1.07998 * 127.27066 * 0.02562 * 18 17 15 34 34 H 0.96704 * 117.00405 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 1.0208 -1.0201 5 7 4.5825 1.0210 -1.0205 6 6 5.3149 0.1023 -1.8956 7 6 5.5780 0.7723 -3.2196 8 1 5.2337 1.7812 -3.3921 9 6 6.2573 0.0966 -4.2111 10 7 6.6762 -1.1322 -4.0012 11 14 6.5828 0.9268 -5.8525 12 1 7.3914 2.1533 -5.6353 13 1 7.3253 -0.0043 -6.7396 14 1 5.2909 1.2917 -6.4875 15 6 5.2565 1.8664 -0.2158 16 8 4.6537 2.5489 0.5905 17 6 6.7222 1.9635 -0.3126 18 6 7.5528 2.6581 0.5269 19 6 8.8539 2.4477 0.0271 20 6 10.1049 2.9929 0.5903 21 8 10.0694 3.6967 1.5799 22 8 11.2858 2.7098 0.0071 23 7 8.7485 1.6748 -1.0378 24 7 7.5188 1.3734 -1.2546 25 1 7.2021 0.8128 -1.9801 26 1 2.9718 -0.9919 -0.2659 27 1 2.9711 0.2668 0.9927 28 1 2.7538 2.0132 -0.7542 29 1 2.7543 0.7546 -2.0127 30 1 6.2630 -0.1655 -1.4291 31 1 4.7215 -0.7979 -2.0554 32 1 7.1544 -1.6073 -4.6986 33 1 7.2705 3.2426 1.3901 34 1 12.0777 3.0891 0.4122 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574481143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:40 Heat of formation + Delta-G solvation = -31.939404 kcal Electronic energy + Delta-G solvation = -22829.022303 eV Core-core repulsion = 19149.681997 eV Total energy + Delta-G solvation = -3679.340306 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.82215 -40.98900 -40.55718 -37.95862 -37.16622 -37.05628 -35.03252 -33.42624 -32.60758 -31.60105 -29.39266 -26.33228 -25.80433 -25.24350 -23.18052 -21.77497 -21.29262 -19.12828 -19.08296 -18.64782 -18.38250 -17.86741 -17.23112 -17.06529 -16.78353 -16.32784 -16.17787 -15.62378 -15.54647 -14.82274 -14.76602 -14.47190 -14.39391 -14.31535 -13.65791 -13.54444 -13.33086 -13.00825 -12.78312 -12.65708 -12.58066 -12.31322 -12.19201 -11.96437 -11.87615 -11.79353 -11.19105 -10.80277 -10.56919 -10.39983 -9.70947 -8.38592 -6.57955 0.17680 0.31437 1.40517 1.46637 1.49955 1.61521 1.69041 1.81539 1.90812 2.01219 2.18813 2.29162 2.40548 2.93761 3.14855 3.43423 3.46436 4.06695 4.11460 4.23003 4.36229 4.53788 4.57453 4.61875 4.86833 5.00154 5.06233 5.14747 5.46045 5.50649 5.59957 5.76684 5.97277 6.26666 6.57125 6.58440 6.71500 7.01053 7.05008 7.18909 8.62836 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.006154 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.036088 B = 4549.153563 C = 6745.897559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.246 3.754 3 C -0.033 4.033 4 C 0.124 3.876 5 N -0.586 5.586 6 C 0.223 3.777 7 C -0.576 4.576 8 H 0.066 0.934 9 C 0.042 3.958 10 N -0.894 5.894 11 Si 0.941 3.059 12 H -0.276 1.276 13 H -0.280 1.280 14 H -0.269 1.269 15 C 0.593 3.407 16 O -0.553 6.553 17 C -0.039 4.039 18 C -0.106 4.106 19 C -0.044 4.044 20 C 0.590 3.410 21 O -0.528 6.528 22 O -0.495 6.495 23 N -0.227 5.227 24 N -0.334 5.334 25 H 0.471 0.529 26 H 0.134 0.866 27 H 0.123 0.877 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.278 0.722 33 H 0.185 0.815 34 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 1.658 4.665 6.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.072 4.072 3 C -0.074 4.074 4 C 0.000 4.000 5 N -0.315 5.315 6 C 0.101 3.899 7 C -0.615 4.615 8 H 0.084 0.916 9 C -0.164 4.164 10 N -0.529 5.529 11 Si 0.766 3.234 12 H -0.202 1.202 13 H -0.205 1.205 14 H -0.194 1.194 15 C 0.380 3.620 16 O -0.432 6.432 17 C -0.166 4.166 18 C -0.135 4.135 19 C -0.197 4.197 20 C 0.432 3.568 21 O -0.417 6.417 22 O -0.309 6.309 23 N -0.070 5.070 24 N -0.072 5.072 25 H 0.339 0.661 26 H 0.152 0.848 27 H 0.141 0.859 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.203 0.797 34 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 2.301 1.338 4.270 5.031 hybrid contribution 0.581 0.531 -0.685 1.044 sum 2.882 1.869 3.584 4.965 Atomic orbital electron populations 1.81225 1.14411 1.10633 1.10578 1.29184 0.95044 0.91448 0.91482 1.19734 0.80105 1.03960 1.03644 1.21348 0.78295 1.00119 1.00209 1.47938 1.07033 1.37032 1.39504 1.19678 0.92567 0.89916 0.87714 1.21744 1.38751 1.01745 0.99244 0.91607 1.25519 0.94669 0.95028 1.01137 1.69924 1.36253 1.10916 1.35845 0.85834 0.78710 0.78648 0.80173 1.20158 1.20481 1.19404 1.16934 0.84198 0.79983 0.80882 1.90776 1.68495 1.45972 1.37918 1.21529 0.93721 1.05171 0.96177 1.21894 0.88923 1.01247 1.01415 1.20824 0.93267 1.07086 0.98517 1.18924 0.82603 0.75795 0.79478 1.90893 1.87738 1.37069 1.25991 1.84620 1.17099 1.71288 1.57851 1.73662 1.03414 1.13595 1.16338 1.46393 1.02136 1.34830 1.23866 0.66148 0.84847 0.85858 0.89580 0.88311 0.95198 0.91904 0.91271 0.79735 0.70044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.72 18.54 20.01 0.37 -14.35 16 2 C 0.25 5.95 15.43 89.45 1.38 7.33 16 3 C -0.03 -0.67 6.03 28.79 0.17 -0.50 16 4 C 0.12 3.17 5.33 86.38 0.46 3.63 16 5 N -0.59 -18.55 2.46 -830.29 -2.04 -20.59 16 6 C 0.22 8.07 4.67 85.63 0.40 8.47 16 7 C -0.58 -23.86 7.43 25.60 0.19 -23.67 16 8 H 0.07 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.04 1.83 5.12 84.65 0.43 2.26 16 10 N -0.89 -40.39 13.29 21.45 0.28 -40.10 16 11 Si 0.94 36.31 29.54 68.60 2.03 38.34 16 12 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 13 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 14 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 15 C 0.59 20.54 7.64 86.60 0.66 21.20 16 16 O -0.55 -20.21 16.53 -4.13 -0.07 -20.28 16 17 C -0.04 -1.38 6.65 40.45 0.27 -1.12 16 18 C -0.11 -3.54 10.56 22.65 0.24 -3.30 16 19 C -0.04 -1.47 7.13 42.27 0.30 -1.17 16 20 C 0.59 17.26 8.34 70.30 0.59 17.84 16 21 O -0.53 -16.77 17.70 19.89 0.35 -16.42 16 22 O -0.50 -11.21 13.44 -56.18 -0.75 -11.97 16 23 N -0.23 -8.45 12.22 -48.49 -0.59 -9.04 16 24 N -0.33 -12.64 5.76 -48.69 -0.28 -12.92 16 25 H 0.47 18.89 3.37 -220.00 -0.74 18.15 16 26 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.09 2.26 7.47 -2.39 -0.02 2.24 16 29 H 0.10 2.46 8.08 -2.39 -0.02 2.44 16 30 H 0.03 1.17 5.18 -2.38 -0.01 1.16 16 31 H 0.06 2.25 8.07 -2.39 -0.02 2.23 16 32 H 0.28 12.18 8.31 -92.71 -0.77 11.41 16 33 H 0.19 5.51 8.06 -2.91 -0.02 5.48 16 34 H 0.44 4.55 9.11 -74.05 -0.67 3.88 16 Total: -1.00 -56.04 316.87 4.17 -51.87 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -0.22 Total: 24.48 kcal Atomic # 6 Polarization: 25.89 SS G_CDS: 5.10 Total: 30.99 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -2.26 Total: -97.01 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -0.47 Total: -48.67 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Total: -56.04 4.17 -51.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574481143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.927 kcal (2) G-P(sol) polarization free energy of solvation -56.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds