Wall clock time and date at job start Tue Mar 31 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00267 * 2 1 4 4 H 1.48508 * 109.47046 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47423 * 120.00276 * 3 2 1 6 6 H 1.48502 * 109.47477 * 240.00305 * 3 2 1 7 7 C 1.37872 * 119.99592 * 180.28244 * 2 1 3 8 8 H 1.08003 * 120.00454 * 179.72248 * 7 2 1 9 9 C 1.50706 * 120.00196 * 359.71543 * 7 2 1 10 10 S 1.81398 * 109.47124 * 180.02562 * 9 7 2 11 11 C 1.76202 * 103.00090 * 179.97438 * 10 9 7 12 12 C 1.38789 * 120.10122 * 359.72974 * 11 10 9 13 13 C 1.38194 * 119.98490 * 179.76728 * 12 11 10 14 14 C 1.38299 * 120.20038 * 0.48116 * 13 12 11 15 15 C 1.38247 * 120.21208 * 359.79435 * 14 13 12 16 16 C 1.38645 * 120.00770 * 359.95145 * 15 14 13 17 17 N 1.40139 * 120.10303 * 180.02562 * 16 15 14 18 18 C 1.34782 * 120.00104 * 325.33269 * 17 16 15 19 19 O 1.21303 * 119.99504 * 4.47080 * 18 17 16 20 20 C 1.50693 * 120.00189 * 184.47302 * 18 17 16 21 21 H 1.09002 * 115.55521 * 325.58096 * 20 18 17 22 22 C 1.53003 * 117.49931 * 111.25116 * 20 18 17 23 23 C 1.53001 * 117.49995 * 179.91030 * 20 18 17 24 24 H 1.09000 * 117.50246 * 145.01881 * 23 20 18 25 25 N 1.46905 * 117.49736 * 359.97438 * 23 20 18 26 26 H 0.96997 * 120.00571 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47281 * 300.00291 * 9 7 2 28 28 H 1.09004 * 109.46921 * 60.00775 * 9 7 2 29 29 H 1.07994 * 120.00677 * 359.97438 * 12 11 10 30 30 H 1.08003 * 119.89739 * 180.25398 * 13 12 11 31 31 H 1.08000 * 119.89545 * 179.76398 * 14 13 12 32 32 H 1.07998 * 119.99519 * 179.97438 * 15 14 13 33 33 H 0.96996 * 120.00488 * 145.32441 * 17 16 15 34 34 H 1.09003 * 117.49963 * 214.97858 * 22 20 18 35 35 H 1.08999 * 117.49865 * 359.97438 * 22 20 18 36 36 H 1.00892 * 111.00117 * 179.97438 * 25 23 20 37 37 H 1.00899 * 111.00044 * 303.95964 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2124 6 1 3.1029 1.6964 -1.2125 7 6 2.0044 -1.1940 -0.0059 8 1 3.0845 -1.1942 -0.0104 9 6 1.2509 -2.4992 -0.0058 10 16 2.4296 -3.8780 -0.0135 11 6 1.3822 -5.2949 -0.0118 12 6 0.0029 -5.1409 0.0000 13 6 -0.8163 -6.2538 -0.0035 14 6 -0.2661 -7.5227 -0.0088 15 6 1.1067 -7.6856 -0.0148 16 6 1.9368 -6.5751 -0.0166 17 7 3.3286 -6.7380 -0.0233 18 6 3.8895 -7.7710 0.6362 19 8 3.1865 -8.6048 1.1672 20 6 5.3897 -7.8900 0.7140 21 1 5.9349 -7.5451 -0.1646 22 6 6.0453 -7.6786 2.0802 23 6 5.9650 -9.0839 1.4786 24 1 6.8887 -9.5242 1.1033 25 7 5.0125 -10.0261 2.0813 26 1 -0.4851 -0.8400 0.0004 27 1 0.6280 -2.5591 0.8866 28 1 0.6205 -2.5547 -0.8934 29 1 -0.4300 -4.1516 0.0086 30 1 -1.8895 -6.1323 0.0016 31 1 -0.9110 -8.3890 -0.0077 32 1 1.5326 -8.6781 -0.0185 33 1 3.8885 -6.1074 -0.5026 34 1 7.0219 -7.1949 2.1003 35 1 5.3915 -7.4530 2.9226 36 1 5.4952 -10.7723 2.5588 37 1 4.3771 -9.5495 2.7035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:53 Heat of formation + Delta-G solvation = 13.286010 kcal Electronic energy + Delta-G solvation = -20188.102011 eV Core-core repulsion = 17057.016040 eV Total energy + Delta-G solvation = -3131.085970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54229 -38.66092 -36.83851 -34.58666 -33.64207 -31.25504 -30.81238 -29.39619 -28.16875 -24.79455 -23.34190 -22.74119 -22.08326 -21.44149 -19.88752 -17.99259 -17.58639 -16.92223 -16.41767 -16.12970 -15.17569 -15.02171 -14.70811 -14.22005 -13.96807 -13.87701 -13.73357 -13.43623 -13.20606 -13.08732 -12.38218 -12.37191 -12.04978 -11.83064 -11.72816 -11.47870 -10.85005 -10.69888 -10.61734 -10.21502 -10.12522 -9.65155 -9.44865 -9.27434 -8.98303 -8.62014 -8.57981 -8.09198 -6.70651 -6.64732 -4.38566 1.44672 1.62438 2.27523 2.52549 3.08123 3.34017 3.35108 3.43478 3.55183 3.61558 4.02188 4.11007 4.36229 4.54287 4.59208 4.70904 4.94797 5.13774 5.21006 5.27811 5.45469 5.47955 5.53796 5.66508 5.76643 5.77123 6.14415 6.44158 6.49504 6.59115 6.62670 6.67268 6.78601 6.93607 7.22907 7.30422 7.50783 7.63718 8.12009 8.21830 8.52306 9.31668 10.75543 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017982 B = 0.004040 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.752940 B = 6929.768756 C = 8307.676333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.029 3.971 3 Si 1.077 2.923 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.598 4.598 8 H 0.062 0.938 9 C 0.058 3.942 10 S -0.145 6.145 11 C -0.098 4.098 12 C -0.120 4.120 13 C -0.115 4.115 14 C -0.124 4.124 15 C -0.106 4.106 16 C 0.149 3.851 17 N -0.662 5.662 18 C 0.543 3.457 19 O -0.506 6.506 20 C -0.190 4.190 21 H 0.127 0.873 22 C -0.194 4.194 23 C 0.072 3.928 24 H 0.126 0.874 25 N -0.800 5.800 26 H 0.269 0.731 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.140 0.860 33 H 0.412 0.588 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.339 0.661 37 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.727 -16.407 1.581 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.903 3.097 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.637 4.637 8 H 0.081 0.919 9 C -0.089 4.089 10 S 0.101 5.899 11 C -0.214 4.214 12 C -0.145 4.145 13 C -0.135 4.135 14 C -0.146 4.146 15 C -0.128 4.128 16 C 0.049 3.951 17 N -0.307 5.307 18 C 0.330 3.670 19 O -0.380 6.380 20 C -0.212 4.212 21 H 0.145 0.855 22 C -0.234 4.234 23 C -0.042 4.042 24 H 0.144 0.856 25 N -0.331 5.331 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.147 0.853 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.158 0.842 33 H 0.248 0.752 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.152 0.848 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.065 -15.341 1.252 17.864 hybrid contribution -0.594 -0.922 0.513 1.210 sum 8.472 -16.263 1.766 18.422 Atomic orbital electron populations 1.70809 1.06844 1.30685 1.45109 1.25978 0.96328 1.02555 0.92949 0.83421 0.74854 0.74485 0.76898 1.20428 1.21058 1.21029 1.21488 0.94741 0.89563 1.57934 0.91947 1.21414 0.95205 0.92741 0.99576 1.85082 1.17117 0.97080 1.90612 1.21972 0.97489 0.96461 1.05439 1.21153 0.91636 0.99791 1.01870 1.21029 0.99478 0.92297 1.00734 1.20956 0.94469 0.97019 1.02120 1.21137 0.92985 0.98204 1.00449 1.17175 0.82555 0.91880 1.03526 1.43475 1.05565 1.29432 1.52231 1.19701 0.88981 0.80598 0.77682 1.90664 1.63019 1.39254 1.45102 1.22489 0.92759 1.07330 0.98633 0.85550 1.23729 1.02367 1.02732 0.94566 1.22255 0.95886 0.86322 0.99722 0.85610 1.58327 1.19107 1.13443 1.42230 0.92067 0.94735 0.94726 0.85259 0.86093 0.86050 0.84235 0.75175 0.87489 0.88269 0.84754 0.82634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 13.65 55.43 0.76 -25.48 16 2 C 0.03 0.79 5.46 -17.82 -0.10 0.69 16 3 Si 1.08 24.19 29.90 -169.99 -5.08 19.11 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.60 -16.44 9.13 -34.44 -0.31 -16.75 16 8 H 0.06 1.71 7.71 -52.48 -0.40 1.30 16 9 C 0.06 1.44 3.40 36.01 0.12 1.57 16 10 S -0.15 -3.07 20.72 -107.50 -2.23 -5.29 16 11 C -0.10 -1.89 6.12 -38.90 -0.24 -2.13 16 12 C -0.12 -2.21 9.36 -39.39 -0.37 -2.58 16 13 C -0.11 -1.80 10.04 -39.58 -0.40 -2.20 16 14 C -0.12 -1.85 10.04 -39.56 -0.40 -2.24 16 15 C -0.11 -1.73 8.70 -39.43 -0.34 -2.08 16 16 C 0.15 2.59 6.32 -83.43 -0.53 2.06 16 17 N -0.66 -9.96 5.02 -9.71 -0.05 -10.01 16 18 C 0.54 7.69 7.46 -10.99 -0.08 7.61 16 19 O -0.51 -8.22 11.38 5.54 0.06 -8.16 16 20 C -0.19 -1.97 6.19 -91.77 -0.57 -2.54 16 21 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 22 C -0.19 -1.73 9.94 -26.69 -0.27 -1.99 16 23 C 0.07 0.64 7.21 -67.67 -0.49 0.15 16 24 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 25 N -0.80 -7.99 8.48 -4.63 -0.04 -8.03 16 26 H 0.27 7.75 7.22 -40.82 -0.29 7.46 16 27 H 0.03 0.89 7.61 -51.92 -0.39 0.50 16 28 H 0.03 0.89 7.63 -51.92 -0.40 0.49 16 29 H 0.13 2.50 5.88 -52.49 -0.31 2.19 16 30 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 31 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.14 2.27 6.20 -52.49 -0.33 1.94 16 33 H 0.41 5.69 7.97 -40.82 -0.33 5.36 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 36 H 0.34 2.46 9.08 -39.30 -0.36 2.11 16 37 H 0.36 4.01 7.30 -39.29 -0.29 3.72 16 LS Contribution 325.05 15.07 4.90 4.90 Total: -1.00 -31.36 325.05 -10.07 -41.43 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -4.42 Total: 11.97 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -3.96 Total: -20.43 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.67 Total: -43.52 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.06 Total: -8.16 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -5.08 Total: 19.11 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.23 Total: -5.29 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.36 -10.07 -41.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.713 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds