Wall clock time and date at job start Tue Mar 31 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00267 * 2 1 4 4 H 1.48508 * 109.47046 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47423 * 120.00276 * 3 2 1 6 6 H 1.48502 * 109.47477 * 240.00305 * 3 2 1 7 7 C 1.37872 * 119.99592 * 180.28244 * 2 1 3 8 8 H 1.08003 * 120.00454 * 179.72248 * 7 2 1 9 9 C 1.50706 * 120.00196 * 359.71543 * 7 2 1 10 10 S 1.81398 * 109.47124 * 180.02562 * 9 7 2 11 11 C 1.76202 * 103.00090 * 179.97438 * 10 9 7 12 12 C 1.38789 * 120.10122 * 359.72974 * 11 10 9 13 13 C 1.38194 * 119.98490 * 179.76728 * 12 11 10 14 14 C 1.38299 * 120.20038 * 0.48116 * 13 12 11 15 15 C 1.38247 * 120.21208 * 359.79435 * 14 13 12 16 16 C 1.38645 * 120.00770 * 359.95145 * 15 14 13 17 17 N 1.40139 * 120.10303 * 180.02562 * 16 15 14 18 18 C 1.34782 * 120.00104 * 325.33269 * 17 16 15 19 19 O 1.21303 * 119.99504 * 4.47080 * 18 17 16 20 20 C 1.50693 * 120.00189 * 184.47302 * 18 17 16 21 21 H 1.09002 * 115.55521 * 325.58096 * 20 18 17 22 22 C 1.53003 * 117.49931 * 111.25116 * 20 18 17 23 23 C 1.53001 * 117.49995 * 179.91030 * 20 18 17 24 24 H 1.09000 * 117.50246 * 145.01881 * 23 20 18 25 25 N 1.46905 * 117.49736 * 359.97438 * 23 20 18 26 26 H 0.96997 * 120.00571 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47281 * 300.00291 * 9 7 2 28 28 H 1.09004 * 109.46921 * 60.00775 * 9 7 2 29 29 H 1.07994 * 120.00677 * 359.97438 * 12 11 10 30 30 H 1.08003 * 119.89739 * 180.25398 * 13 12 11 31 31 H 1.08000 * 119.89545 * 179.76398 * 14 13 12 32 32 H 1.07998 * 119.99519 * 179.97438 * 15 14 13 33 33 H 0.96996 * 120.00488 * 145.32441 * 17 16 15 34 34 H 1.09003 * 117.49963 * 214.97858 * 22 20 18 35 35 H 1.08999 * 117.49865 * 359.97438 * 22 20 18 36 36 H 1.00892 * 111.00117 * 179.97438 * 25 23 20 37 37 H 1.00899 * 111.00044 * 303.95964 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2124 6 1 3.1029 1.6964 -1.2125 7 6 2.0044 -1.1940 -0.0059 8 1 3.0845 -1.1942 -0.0104 9 6 1.2509 -2.4992 -0.0058 10 16 2.4296 -3.8780 -0.0135 11 6 1.3822 -5.2949 -0.0118 12 6 0.0029 -5.1409 0.0000 13 6 -0.8163 -6.2538 -0.0035 14 6 -0.2661 -7.5227 -0.0088 15 6 1.1067 -7.6856 -0.0148 16 6 1.9368 -6.5751 -0.0166 17 7 3.3286 -6.7380 -0.0233 18 6 3.8895 -7.7710 0.6362 19 8 3.1865 -8.6048 1.1672 20 6 5.3897 -7.8900 0.7140 21 1 5.9349 -7.5451 -0.1646 22 6 6.0453 -7.6786 2.0802 23 6 5.9650 -9.0839 1.4786 24 1 6.8887 -9.5242 1.1033 25 7 5.0125 -10.0261 2.0813 26 1 -0.4851 -0.8400 0.0004 27 1 0.6280 -2.5591 0.8866 28 1 0.6205 -2.5547 -0.8934 29 1 -0.4300 -4.1516 0.0086 30 1 -1.8895 -6.1323 0.0016 31 1 -0.9110 -8.3890 -0.0077 32 1 1.5326 -8.6781 -0.0185 33 1 3.8885 -6.1074 -0.5026 34 1 7.0219 -7.1949 2.1003 35 1 5.3915 -7.4530 2.9226 36 1 5.4952 -10.7723 2.5588 37 1 4.3771 -9.5495 2.7035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580051782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:53 Heat of formation + Delta-G solvation = -6.766351 kcal Electronic energy + Delta-G solvation = -20188.971546 eV Core-core repulsion = 17057.016040 eV Total energy + Delta-G solvation = -3131.955506 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67186 -39.82099 -37.78031 -35.91390 -35.64227 -32.21510 -32.05868 -30.63324 -30.19805 -25.89856 -25.29373 -24.08837 -23.09471 -22.41703 -20.97391 -19.60501 -18.57721 -18.50945 -17.85774 -17.07268 -16.58970 -16.32500 -15.88026 -15.65622 -15.52373 -15.23594 -15.00689 -14.94953 -14.47053 -14.20499 -13.92403 -13.79460 -13.50647 -13.12192 -12.89374 -12.60110 -12.42844 -12.18246 -11.93155 -11.52061 -11.33766 -11.22583 -10.99406 -10.89322 -10.75421 -10.56351 -9.43262 -9.30212 -8.86327 -8.31749 -6.61346 0.12307 0.26000 0.64137 1.45885 1.52490 1.59824 1.63359 1.80854 1.99321 2.49329 2.66380 2.87691 3.00454 3.39032 3.67546 3.79752 3.84159 3.96207 4.08014 4.22741 4.31288 4.41516 4.45989 4.51956 4.55048 4.79240 4.81732 4.84340 4.98491 5.12911 5.22059 5.40686 5.46667 5.54858 5.91755 5.93801 6.21324 6.29846 6.33726 6.64438 7.09430 7.18429 8.54796 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017982 B = 0.004040 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.752940 B = 6929.768756 C = 8307.676333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.019 4.019 3 Si 1.123 2.877 4 H -0.279 1.279 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.614 4.614 8 H 0.061 0.939 9 C 0.059 3.941 10 S -0.134 6.134 11 C -0.126 4.126 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.107 4.107 15 C -0.113 4.113 16 C 0.149 3.851 17 N -0.664 5.664 18 C 0.538 3.462 19 O -0.529 6.529 20 C -0.206 4.206 21 H 0.150 0.850 22 C -0.186 4.186 23 C 0.081 3.919 24 H 0.157 0.843 25 N -0.816 5.816 26 H 0.257 0.743 27 H 0.014 0.986 28 H 0.017 0.983 29 H 0.110 0.890 30 H 0.150 0.850 31 H 0.160 0.840 32 H 0.144 0.856 33 H 0.416 0.584 34 H 0.131 0.869 35 H 0.082 0.918 36 H 0.353 0.647 37 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.220 -17.778 1.530 20.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.943 3.057 4 H -0.204 1.204 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.652 4.652 8 H 0.079 0.921 9 C -0.088 4.088 10 S 0.111 5.889 11 C -0.241 4.241 12 C -0.161 4.161 13 C -0.134 4.134 14 C -0.128 4.128 15 C -0.135 4.135 16 C 0.048 3.952 17 N -0.309 5.309 18 C 0.327 3.673 19 O -0.405 6.405 20 C -0.228 4.228 21 H 0.167 0.833 22 C -0.226 4.226 23 C -0.033 4.033 24 H 0.174 0.826 25 N -0.347 5.347 26 H 0.067 0.933 27 H 0.033 0.967 28 H 0.036 0.964 29 H 0.128 0.872 30 H 0.168 0.832 31 H 0.177 0.823 32 H 0.161 0.839 33 H 0.253 0.747 34 H 0.149 0.851 35 H 0.100 0.900 36 H 0.168 0.832 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.576 -16.766 1.200 19.859 hybrid contribution -1.115 -0.711 0.547 1.432 sum 9.461 -17.477 1.748 19.951 Atomic orbital electron populations 1.70923 1.07857 1.30073 1.47031 1.27534 0.96386 1.06368 0.91707 0.82863 0.74139 0.70392 0.78343 1.20438 1.19191 1.19026 1.21835 0.94913 0.90896 1.57602 0.92062 1.21105 0.95664 0.94346 0.97726 1.84686 1.16008 0.96497 1.91674 1.21955 0.97593 0.96066 1.08469 1.21190 0.91935 1.00078 1.02915 1.21325 1.00699 0.91616 0.99733 1.21398 0.94339 0.97890 0.99156 1.21330 0.93698 0.97882 1.00569 1.17351 0.83975 0.91332 1.02558 1.43609 1.04745 1.29985 1.52564 1.20427 0.90616 0.79645 0.76611 1.90643 1.64046 1.39956 1.45881 1.22630 0.90148 1.09598 1.00410 0.83283 1.23773 1.02751 1.03204 0.92880 1.22511 0.96158 0.86019 0.98602 0.82590 1.58296 1.19784 1.14201 1.42371 0.93310 0.96733 0.96449 0.87238 0.83194 0.82261 0.83856 0.74706 0.85109 0.89986 0.83165 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.31 13.65 21.45 0.29 -55.02 16 2 C -0.02 -1.09 5.46 84.65 0.46 -0.63 16 3 Si 1.12 48.40 29.90 68.60 2.05 50.45 16 4 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 6 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.61 -34.55 9.13 25.60 0.23 -34.32 16 8 H 0.06 3.39 7.71 -2.91 -0.02 3.37 16 9 C 0.06 3.10 3.40 71.24 0.24 3.35 16 10 S -0.13 -5.79 20.72 -56.49 -1.17 -6.96 16 11 C -0.13 -4.91 6.12 22.71 0.14 -4.77 16 12 C -0.14 -5.16 9.36 22.39 0.21 -4.95 16 13 C -0.11 -3.40 10.04 22.27 0.22 -3.18 16 14 C -0.11 -2.92 10.04 22.29 0.22 -2.70 16 15 C -0.11 -3.54 8.70 22.37 0.19 -3.35 16 16 C 0.15 5.12 6.32 38.22 0.24 5.36 16 17 N -0.66 -19.67 5.02 -303.00 -1.52 -21.19 16 18 C 0.54 14.74 7.46 87.65 0.65 15.39 16 19 O -0.53 -16.80 11.38 -3.10 -0.04 -16.83 16 20 C -0.21 -3.87 6.19 -11.54 -0.07 -3.94 16 21 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 22 C -0.19 -2.93 9.94 30.62 0.30 -2.63 16 23 C 0.08 1.23 7.21 44.94 0.32 1.55 16 24 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 25 N -0.82 -14.99 8.48 -168.56 -1.43 -16.42 16 26 H 0.26 15.56 7.22 -92.71 -0.67 14.89 16 27 H 0.01 0.80 7.61 -2.39 -0.02 0.78 16 28 H 0.02 0.95 7.63 -2.39 -0.02 0.93 16 29 H 0.11 4.51 5.88 -2.91 -0.02 4.49 16 30 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.14 4.44 6.20 -2.91 -0.02 4.42 16 33 H 0.42 11.33 7.97 -92.71 -0.74 10.60 16 34 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.60 8.09 -2.39 -0.02 1.58 16 36 H 0.35 4.50 9.08 -89.70 -0.81 3.69 16 37 H 0.35 7.56 7.30 -89.69 -0.65 6.90 16 Total: -1.00 -69.26 325.05 0.59 -68.66 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.98 Total: 32.12 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 3.38 Total: -34.82 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -2.66 Total: -92.62 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.04 Total: -16.83 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 2.05 Total: 50.45 kcal Atomic # 16 Polarization: -5.79 SS G_CDS: -1.17 Total: -6.96 kcal Total: -69.26 0.59 -68.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.898 kcal (2) G-P(sol) polarization free energy of solvation -69.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds