Wall clock time and date at job start Tue Mar 31 2020 06:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99900 * 2 1 4 4 H 1.48500 * 109.47261 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47143 * 299.99876 * 3 2 1 6 6 H 1.48505 * 109.47214 * 59.99949 * 3 2 1 7 7 C 1.38729 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99951 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99767 * 359.97438 * 7 2 1 10 10 C 1.76201 * 99.99786 * 185.11898 * 9 7 2 11 11 C 1.39218 * 120.02208 * 265.52689 * 10 9 7 12 12 C 1.38135 * 120.20302 * 179.97438 * 11 10 9 13 13 C 1.38092 * 120.24167 * 359.79747 * 12 11 10 14 14 C 1.39631 * 120.03786 * 0.46295 * 13 12 11 15 15 C 1.47859 * 120.10007 * 179.78953 * 14 13 12 16 16 O 1.21558 * 119.99765 * 179.72056 * 15 14 13 17 17 N 1.34772 * 120.00158 * 359.72717 * 15 14 13 18 18 C 1.46498 * 120.00071 * 180.02562 * 17 15 14 19 19 H 1.09002 * 112.85081 * 334.65701 * 18 17 15 20 20 C 1.53784 * 113.69520 * 105.93160 * 18 17 15 21 21 C 1.53778 * 87.08397 * 139.98960 * 20 18 17 22 22 H 1.09003 * 113.69119 * 89.12641 * 21 20 18 23 23 N 1.46898 * 113.61686 * 220.01834 * 21 20 18 24 24 C 1.53780 * 87.08176 * 334.56899 * 21 20 18 25 25 C 1.38836 * 120.01525 * 85.51410 * 10 9 7 26 26 H 0.97003 * 120.00322 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.89955 * 359.97438 * 11 10 9 28 28 H 1.07996 * 119.88193 * 180.02562 * 12 11 10 29 29 H 1.08000 * 119.97810 * 180.23387 * 13 12 11 30 30 H 0.96998 * 119.99777 * 359.97438 * 17 15 14 31 31 H 1.08997 * 113.61382 * 254.54331 * 20 18 17 32 32 H 1.08997 * 113.60837 * 25.44126 * 20 18 17 33 33 H 1.00897 * 111.00189 * 277.50179 * 23 21 20 34 34 H 1.00908 * 110.99667 * 41.45507 * 23 21 20 35 35 H 1.09003 * 113.61766 * 270.88147 * 24 21 20 36 36 H 1.08998 * 113.61512 * 139.97993 * 24 21 20 37 37 H 1.07999 * 120.12382 * 0.04014 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0099 -1.2014 -0.0005 8 1 3.0899 -1.2013 -0.0001 9 16 1.1289 -2.7273 -0.0005 10 6 2.4728 -3.8564 0.1535 11 6 3.0361 -4.4282 -0.9840 12 6 4.0901 -5.3134 -0.8676 13 6 4.5949 -5.6340 0.3771 14 6 4.0341 -5.0707 1.5251 15 6 4.5704 -5.4166 2.8588 16 8 4.0841 -4.9211 3.8566 17 7 5.5986 -6.2810 2.9682 18 6 6.1297 -6.6241 4.2897 19 1 5.9512 -5.8466 5.0326 20 6 5.7383 -8.0329 4.7663 21 6 7.1681 -8.1578 5.3185 22 1 7.2749 -7.8002 6.3427 23 7 7.7647 -9.4843 5.1125 24 6 7.5836 -7.1241 4.2586 25 6 2.9707 -4.1762 1.4094 26 1 -0.4851 0.8400 -0.0004 27 1 2.6478 -4.1789 -1.9605 28 1 4.5234 -5.7535 -1.7535 29 1 5.4215 -6.3237 0.4629 30 1 5.9865 -6.6765 2.1720 31 1 4.9699 -8.0346 5.5393 32 1 5.5227 -8.7249 3.9522 33 1 7.4665 -10.1301 5.8281 34 1 7.5490 -9.8389 4.1928 35 1 7.8725 -7.5676 3.3057 36 1 8.3049 -6.3921 4.6218 37 1 2.5354 -3.7345 2.2936 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:16 Heat of formation + Delta-G solvation = 2.795135 kcal Electronic energy + Delta-G solvation = -19808.811224 eV Core-core repulsion = 16677.270335 eV Total energy + Delta-G solvation = -3131.540889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.41582 -39.03138 -37.60035 -34.16141 -32.51570 -31.79670 -30.63872 -30.28643 -26.05565 -25.57983 -24.64326 -22.79818 -22.06559 -20.57011 -20.09016 -18.25362 -17.37418 -16.88853 -16.29088 -15.84728 -15.22045 -14.95728 -14.85821 -14.66670 -14.41586 -14.08856 -13.50706 -13.33599 -13.18915 -12.92134 -12.87148 -12.28295 -11.70578 -11.55713 -11.35342 -11.19659 -11.14987 -11.12164 -11.10554 -10.71070 -9.97540 -9.77845 -9.27302 -9.17663 -9.04673 -8.95205 -8.60215 -8.04326 -6.72283 -6.29426 -4.03412 1.14019 1.64766 3.00531 3.06745 3.19241 3.22509 3.28610 3.46546 4.01891 4.06936 4.22461 4.24750 4.39598 4.54193 4.57794 4.82694 5.05140 5.07508 5.21494 5.29342 5.31289 5.40622 5.46655 5.57878 5.62937 5.70871 5.85517 5.89083 5.98217 6.23312 6.39328 6.56968 6.61595 6.66867 6.91577 6.99240 7.17254 7.47105 7.57177 8.26640 8.32304 9.16600 10.77392 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025176 B = 0.003190 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.903710 B = 8775.307253 C = 9234.565900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.073 3.927 3 Si 0.921 3.079 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.519 4.519 8 H 0.076 0.924 9 S -0.036 6.036 10 C -0.106 4.106 11 C -0.055 4.055 12 C -0.141 4.141 13 C -0.090 4.090 14 C -0.156 4.156 15 C 0.564 3.436 16 O -0.534 6.534 17 N -0.721 5.721 18 C 0.126 3.874 19 H 0.116 0.884 20 C -0.191 4.191 21 C 0.074 3.926 22 H 0.106 0.894 23 N -0.838 5.838 24 C -0.139 4.139 25 C -0.019 4.019 26 H 0.269 0.731 27 H 0.132 0.868 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.399 0.601 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.343 0.657 34 H 0.342 0.658 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.785 -17.165 4.554 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.136 4.136 3 Si 0.747 3.253 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.666 4.666 8 H 0.094 0.906 9 S 0.199 5.801 10 C -0.217 4.217 11 C -0.076 4.076 12 C -0.161 4.161 13 C -0.109 4.109 14 C -0.160 4.160 15 C 0.353 3.647 16 O -0.411 6.411 17 N -0.373 5.373 18 C 0.020 3.980 19 H 0.134 0.866 20 C -0.233 4.233 21 C -0.039 4.039 22 H 0.124 0.876 23 N -0.366 5.366 24 C -0.178 4.178 25 C -0.040 4.040 26 H 0.079 0.921 27 H 0.150 0.850 28 H 0.142 0.858 29 H 0.134 0.866 30 H 0.235 0.765 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.799 -16.475 5.307 21.527 hybrid contribution 1.056 0.651 -0.439 1.316 sum 13.855 -15.824 4.868 21.588 Atomic orbital electron populations 1.69992 1.05910 1.27584 1.47062 1.25007 0.95131 0.99139 0.94335 0.86064 0.79735 0.81528 0.77962 1.19490 1.20466 1.20422 1.22876 0.94902 0.90135 1.58700 0.90566 1.83612 1.04296 0.97197 1.95015 1.22856 1.02945 1.02056 0.93837 1.21966 0.93331 0.93441 0.98866 1.21059 0.98192 0.99926 0.96921 1.21127 0.98692 0.98766 0.92326 1.19873 1.00762 1.03279 0.92132 1.18467 0.79169 0.77886 0.89168 1.90769 1.59049 1.52752 1.38544 1.45849 1.35594 1.47109 1.08756 1.22301 0.93409 0.96198 0.86047 0.86585 1.24354 0.99081 0.98281 1.01541 1.22677 0.91690 0.90174 0.99320 0.87560 1.58665 1.65565 1.04296 1.08060 1.23472 0.96126 0.98280 0.99923 1.21959 0.91938 0.91950 0.98195 0.92094 0.85045 0.85846 0.86587 0.76550 0.90864 0.89802 0.84432 0.84531 0.89431 0.90262 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.51 13.22 55.49 0.73 -24.78 16 2 C 0.07 2.05 5.49 -17.46 -0.10 1.95 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.68 9.46 30.91 0.29 -14.39 16 8 H 0.08 2.15 7.79 -52.49 -0.41 1.74 16 9 S -0.04 -0.92 21.41 -107.50 -2.30 -3.23 16 10 C -0.11 -2.27 5.45 -39.00 -0.21 -2.49 16 11 C -0.05 -0.98 9.79 -39.26 -0.38 -1.36 16 12 C -0.14 -2.00 10.02 -39.67 -0.40 -2.40 16 13 C -0.09 -1.22 9.54 -39.12 -0.37 -1.59 16 14 C -0.16 -2.61 5.87 -105.00 -0.62 -3.23 16 15 C 0.56 9.07 7.77 -12.33 -0.10 8.98 16 16 O -0.53 -10.59 15.96 5.31 0.08 -10.50 16 17 N -0.72 -8.13 5.31 -53.95 -0.29 -8.42 16 18 C 0.13 1.24 4.22 -67.12 -0.28 0.96 16 19 H 0.12 1.35 7.50 -51.93 -0.39 0.96 16 20 C -0.19 -1.55 7.59 -25.92 -0.20 -1.75 16 21 C 0.07 0.51 5.01 -66.90 -0.33 0.17 16 22 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 23 N -0.84 -5.05 9.64 -3.98 -0.04 -5.09 16 24 C -0.14 -1.03 7.62 -25.92 -0.20 -1.22 16 25 C -0.02 -0.38 9.34 -38.92 -0.36 -0.75 16 26 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 28 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 29 H 0.12 1.09 6.40 -52.49 -0.34 0.75 16 30 H 0.40 3.42 6.74 -40.82 -0.28 3.14 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.64 8.03 -51.93 -0.42 0.23 16 33 H 0.34 1.63 9.08 -39.29 -0.36 1.28 16 34 H 0.34 1.75 8.84 -39.29 -0.35 1.40 16 35 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.14 3.08 7.65 -52.49 -0.40 2.68 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -33.03 332.58 -9.68 -42.71 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.60 Total: 4.91 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -3.26 Total: -17.12 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.41 Total: -38.29 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.23 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.03 -9.68 -42.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.509 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds