Wall clock time and date at job start Tue Mar 31 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99900 * 2 1 4 4 H 1.48500 * 109.47261 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47143 * 299.99876 * 3 2 1 6 6 H 1.48505 * 109.47214 * 59.99949 * 3 2 1 7 7 C 1.38729 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99951 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99767 * 359.97438 * 7 2 1 10 10 C 1.76201 * 99.99786 * 185.11898 * 9 7 2 11 11 C 1.39218 * 120.02208 * 265.52689 * 10 9 7 12 12 C 1.38135 * 120.20302 * 179.97438 * 11 10 9 13 13 C 1.38092 * 120.24167 * 359.79747 * 12 11 10 14 14 C 1.39631 * 120.03786 * 0.46295 * 13 12 11 15 15 C 1.47859 * 120.10007 * 179.78953 * 14 13 12 16 16 O 1.21558 * 119.99765 * 179.72056 * 15 14 13 17 17 N 1.34772 * 120.00158 * 359.72717 * 15 14 13 18 18 C 1.46498 * 120.00071 * 180.02562 * 17 15 14 19 19 H 1.09002 * 112.85081 * 334.65701 * 18 17 15 20 20 C 1.53784 * 113.69520 * 105.93160 * 18 17 15 21 21 C 1.53778 * 87.08397 * 139.98960 * 20 18 17 22 22 H 1.09003 * 113.69119 * 89.12641 * 21 20 18 23 23 N 1.46898 * 113.61686 * 220.01834 * 21 20 18 24 24 C 1.53780 * 87.08176 * 334.56899 * 21 20 18 25 25 C 1.38836 * 120.01525 * 85.51410 * 10 9 7 26 26 H 0.97003 * 120.00322 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.89955 * 359.97438 * 11 10 9 28 28 H 1.07996 * 119.88193 * 180.02562 * 12 11 10 29 29 H 1.08000 * 119.97810 * 180.23387 * 13 12 11 30 30 H 0.96998 * 119.99777 * 359.97438 * 17 15 14 31 31 H 1.08997 * 113.61382 * 254.54331 * 20 18 17 32 32 H 1.08997 * 113.60837 * 25.44126 * 20 18 17 33 33 H 1.00897 * 111.00189 * 277.50179 * 23 21 20 34 34 H 1.00908 * 110.99667 * 41.45507 * 23 21 20 35 35 H 1.09003 * 113.61766 * 270.88147 * 24 21 20 36 36 H 1.08998 * 113.61512 * 139.97993 * 24 21 20 37 37 H 1.07999 * 120.12382 * 0.04014 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0099 -1.2014 -0.0005 8 1 3.0899 -1.2013 -0.0001 9 16 1.1289 -2.7273 -0.0005 10 6 2.4728 -3.8564 0.1535 11 6 3.0361 -4.4282 -0.9840 12 6 4.0901 -5.3134 -0.8676 13 6 4.5949 -5.6340 0.3771 14 6 4.0341 -5.0707 1.5251 15 6 4.5704 -5.4166 2.8588 16 8 4.0841 -4.9211 3.8566 17 7 5.5986 -6.2810 2.9682 18 6 6.1297 -6.6241 4.2897 19 1 5.9512 -5.8466 5.0326 20 6 5.7383 -8.0329 4.7663 21 6 7.1681 -8.1578 5.3185 22 1 7.2749 -7.8002 6.3427 23 7 7.7647 -9.4843 5.1125 24 6 7.5836 -7.1241 4.2586 25 6 2.9707 -4.1762 1.4094 26 1 -0.4851 0.8400 -0.0004 27 1 2.6478 -4.1789 -1.9605 28 1 4.5234 -5.7535 -1.7535 29 1 5.4215 -6.3237 0.4629 30 1 5.9865 -6.6765 2.1720 31 1 4.9699 -8.0346 5.5393 32 1 5.5227 -8.7249 3.9522 33 1 7.4665 -10.1301 5.8281 34 1 7.5490 -9.8389 4.1928 35 1 7.8725 -7.5676 3.3057 36 1 8.3049 -6.3921 4.6218 37 1 2.5354 -3.7345 2.2936 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:15 Heat of formation + Delta-G solvation = -21.487492 kcal Electronic energy + Delta-G solvation = -19809.864198 eV Core-core repulsion = 16677.270335 eV Total energy + Delta-G solvation = -3132.593863 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47786 -40.01788 -38.86240 -35.17881 -34.67149 -32.70742 -31.96391 -31.38801 -27.76463 -26.67870 -25.73478 -23.96996 -23.24961 -21.70073 -20.91565 -19.94011 -18.91388 -17.77688 -17.10470 -16.95579 -16.94617 -16.64494 -16.09707 -15.80067 -15.52570 -15.20877 -14.89839 -14.63046 -14.23093 -14.03382 -13.71988 -13.46184 -13.27700 -13.08506 -12.99476 -12.67688 -12.41328 -12.18842 -12.07884 -11.87519 -11.74894 -11.27151 -11.10732 -10.75807 -10.24438 -9.92020 -9.71665 -9.52339 -8.82442 -8.41015 -6.21177 -0.20072 0.24042 1.28425 1.35293 1.45419 1.63612 1.76797 2.06731 2.23078 2.78343 2.92085 3.39909 3.43721 3.58224 3.63699 3.81802 3.89301 3.93447 4.00163 4.02442 4.34307 4.46445 4.57831 4.68038 4.71152 4.79511 4.90546 4.93524 5.02275 5.16157 5.20738 5.31066 5.37080 5.49485 5.51832 5.85357 6.14313 6.22614 6.45608 6.62616 6.99435 7.12689 8.66394 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025176 B = 0.003190 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.903710 B = 8775.307253 C = 9234.565900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.019 3.981 3 Si 0.993 3.007 4 H -0.266 1.266 5 H -0.265 1.265 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.067 0.933 9 S -0.097 6.097 10 C -0.129 4.129 11 C -0.063 4.063 12 C -0.120 4.120 13 C -0.062 4.062 14 C -0.158 4.158 15 C 0.561 3.439 16 O -0.585 6.585 17 N -0.695 5.695 18 C 0.110 3.890 19 H 0.091 0.909 20 C -0.185 4.185 21 C 0.083 3.917 22 H 0.107 0.893 23 N -0.839 5.839 24 C -0.126 4.126 25 C -0.046 4.046 26 H 0.274 0.726 27 H 0.135 0.865 28 H 0.177 0.823 29 H 0.175 0.825 30 H 0.417 0.583 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.350 0.650 34 H 0.349 0.651 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.511 -19.393 3.329 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.190 1.190 5 H -0.189 1.189 6 H -0.198 1.198 7 C -0.682 4.682 8 H 0.085 0.915 9 S 0.137 5.863 10 C -0.240 4.240 11 C -0.084 4.084 12 C -0.140 4.140 13 C -0.080 4.080 14 C -0.163 4.163 15 C 0.350 3.650 16 O -0.466 6.466 17 N -0.347 5.347 18 C 0.005 3.995 19 H 0.109 0.891 20 C -0.226 4.226 21 C -0.030 4.030 22 H 0.125 0.875 23 N -0.369 5.369 24 C -0.164 4.164 25 C -0.068 4.068 26 H 0.083 0.917 27 H 0.153 0.847 28 H 0.194 0.806 29 H 0.192 0.808 30 H 0.256 0.744 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.562 -18.762 4.064 25.354 hybrid contribution 0.001 1.139 -0.035 1.140 sum 16.563 -17.623 4.028 24.518 Atomic orbital electron populations 1.70111 1.07519 1.28763 1.47884 1.26021 0.96079 1.02918 0.93627 0.84986 0.78311 0.76670 0.78540 1.19011 1.18931 1.19774 1.23084 0.94596 0.91574 1.58928 0.91506 1.83488 1.08732 0.98667 1.95368 1.22494 1.03021 1.02787 0.95683 1.22087 0.94521 0.94188 0.97607 1.21569 0.95776 0.97516 0.99094 1.21722 0.98534 0.97310 0.90475 1.19988 0.99711 1.02560 0.94090 1.18465 0.79965 0.78392 0.88209 1.90752 1.60947 1.54937 1.39914 1.45667 1.33587 1.45094 1.10322 1.22484 0.95773 0.96503 0.84762 0.89116 1.24347 0.99745 0.96967 1.01532 1.22564 0.90452 0.90722 0.99242 0.87534 1.58662 1.65260 1.04042 1.08904 1.23431 0.93912 0.98130 1.00951 1.21631 0.94253 0.94376 0.96581 0.91673 0.84675 0.80558 0.80769 0.74432 0.92220 0.88620 0.83564 0.83686 0.87611 0.90100 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.15 13.22 21.63 0.29 -54.86 16 2 C 0.02 1.08 5.49 84.84 0.47 1.55 16 3 Si 0.99 45.06 29.55 68.60 2.03 47.08 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.53 -31.72 9.46 67.94 0.64 -31.08 16 8 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 9 S -0.10 -5.38 21.41 -56.49 -1.21 -6.59 16 10 C -0.13 -5.73 5.45 22.65 0.12 -5.60 16 11 C -0.06 -2.18 9.79 22.48 0.22 -1.96 16 12 C -0.12 -2.85 10.02 22.21 0.22 -2.62 16 13 C -0.06 -1.38 9.54 22.57 0.22 -1.17 16 14 C -0.16 -5.17 5.87 -20.11 -0.12 -5.28 16 15 C 0.56 17.75 7.77 86.79 0.67 18.42 16 16 O -0.58 -24.27 15.96 -3.90 -0.06 -24.34 16 17 N -0.69 -13.83 5.31 -442.88 -2.35 -16.19 16 18 C 0.11 1.98 4.22 45.52 0.19 2.17 16 19 H 0.09 2.15 7.50 -2.39 -0.02 2.13 16 20 C -0.18 -2.62 7.59 31.12 0.24 -2.38 16 21 C 0.08 0.92 5.01 45.44 0.23 1.15 16 22 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 23 N -0.84 -7.39 9.64 -166.50 -1.60 -9.00 16 24 C -0.13 -1.45 7.62 31.12 0.24 -1.21 16 25 C -0.05 -2.00 9.34 22.70 0.21 -1.79 16 26 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 27 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 28 H 0.18 2.47 8.06 -2.91 -0.02 2.44 16 29 H 0.18 1.90 6.40 -2.91 -0.02 1.88 16 30 H 0.42 5.02 6.74 -92.71 -0.62 4.40 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.14 8.03 -2.39 -0.02 1.13 16 33 H 0.35 2.35 9.08 -89.70 -0.81 1.53 16 34 H 0.35 2.23 8.84 -89.69 -0.79 1.44 16 35 H 0.11 0.88 8.11 -2.39 -0.02 0.86 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 4.97 7.65 -2.91 -0.02 4.95 16 Total: -1.00 -79.26 332.58 -0.47 -79.73 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -1.11 Total: 13.97 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 3.55 Total: -29.81 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -3.67 Total: -80.04 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.06 Total: -24.34 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -1.21 Total: -6.59 kcal Total: -79.26 -0.47 -79.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.242 kcal (2) G-P(sol) polarization free energy of solvation -79.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds