Wall clock time and date at job start Tue Mar 31 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 120.00079 * 2 1 4 4 H 1.48492 * 109.47118 * 269.99528 * 3 2 1 5 5 H 1.48494 * 109.47084 * 29.99818 * 3 2 1 6 6 H 1.48502 * 109.47066 * 149.99663 * 3 2 1 7 7 C 1.38731 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99807 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00097 * 180.02562 * 7 2 1 10 10 C 1.76202 * 99.99847 * 185.12259 * 9 7 2 11 11 C 1.39229 * 120.01645 * 265.48730 * 10 9 7 12 12 C 1.38142 * 120.19975 * 180.02562 * 11 10 9 13 13 C 1.38087 * 120.24147 * 359.72347 * 12 11 10 14 14 C 1.39636 * 120.03534 * 0.55577 * 13 12 11 15 15 C 1.47867 * 120.09613 * 179.72008 * 14 13 12 16 16 O 1.21548 * 120.00156 * 179.72575 * 15 14 13 17 17 N 1.34785 * 119.99828 * 359.72248 * 15 14 13 18 18 C 1.46500 * 119.99805 * 180.02562 * 17 15 14 19 19 H 1.09003 * 112.84751 * 25.33280 * 18 17 15 20 20 C 1.53781 * 113.61489 * 156.53195 * 18 17 15 21 21 C 1.53776 * 87.08169 * 140.06487 * 20 18 17 22 22 H 1.08997 * 113.61338 * 219.93354 * 21 20 18 23 23 N 1.46904 * 113.61215 * 89.11617 * 21 20 18 24 24 C 1.53778 * 87.08165 * 334.56771 * 21 20 18 25 25 C 1.38834 * 120.02261 * 85.51294 * 10 9 7 26 26 H 0.97010 * 120.00007 * 0.02562 * 1 2 3 27 27 H 1.07996 * 119.89937 * 359.97438 * 11 10 9 28 28 H 1.07994 * 119.87468 * 180.02562 * 12 11 10 29 29 H 1.07996 * 119.97768 * 180.27846 * 13 12 11 30 30 H 0.96997 * 119.99807 * 0.02562 * 17 15 14 31 31 H 1.09003 * 113.60877 * 254.61331 * 20 18 17 32 32 H 1.08997 * 113.61433 * 25.51115 * 20 18 17 33 33 H 1.00902 * 110.99826 * 180.02562 * 23 21 20 34 34 H 1.00897 * 111.00303 * 303.94904 * 23 21 20 35 35 H 1.09004 * 113.61777 * 270.88104 * 24 21 20 36 36 H 1.09005 * 113.61839 * 139.97774 * 24 21 20 37 37 H 1.07998 * 120.12181 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0098 -1.2014 0.0005 8 1 1.4698 -2.1367 0.0005 9 16 3.7718 -1.2014 0.0012 10 6 4.0778 -2.9298 -0.1532 11 6 4.2917 -3.7036 0.9843 12 6 4.5324 -5.0589 0.8676 13 6 4.5569 -5.6562 -0.3772 14 6 4.3495 -4.8886 -1.5250 15 6 4.3816 -5.5258 -2.8590 16 8 4.1959 -4.8568 -3.8567 17 7 4.6169 -6.8484 -2.9685 18 6 4.6492 -7.4796 -4.2902 19 1 4.9091 -6.7818 -5.0862 20 6 5.4578 -8.7871 -4.3288 21 6 4.3607 -9.3463 -5.2498 22 1 4.1034 -10.3848 -5.0419 23 7 4.6047 -9.0936 -6.6763 24 6 3.4065 -8.3311 -4.5989 25 6 4.1063 -3.5207 -1.4092 26 1 -0.4851 0.8401 -0.0004 27 1 4.2701 -3.2428 1.9608 28 1 4.6972 -5.6542 1.7534 29 1 4.7411 -6.7169 -0.4632 30 1 4.7648 -7.3823 -2.1723 31 1 6.4276 -8.6864 -4.8161 32 1 5.5178 -9.2920 -3.3647 33 1 3.8626 -9.4758 -7.2433 34 1 4.7236 -8.1075 -6.8537 35 1 2.9055 -8.7113 -3.7086 36 1 2.7202 -7.8623 -5.3042 37 1 3.9407 -2.9229 -2.2933 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:18 Heat of formation + Delta-G solvation = 5.122319 kcal Electronic energy + Delta-G solvation = -19886.424900 eV Core-core repulsion = 16754.984925 eV Total energy + Delta-G solvation = -3131.439975 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.49103 -39.13511 -37.67285 -34.15314 -32.51361 -31.57091 -30.70438 -30.28405 -26.04873 -25.69393 -24.92589 -23.11266 -22.26092 -20.56906 -19.69530 -18.29107 -17.43376 -17.16237 -16.02682 -15.51619 -15.47645 -15.20820 -14.92933 -14.85308 -14.40417 -13.90785 -13.62007 -13.47369 -13.07478 -12.93467 -12.84732 -12.42205 -12.13660 -11.96442 -11.37887 -11.22296 -11.15039 -11.11049 -10.80770 -10.64393 -9.95924 -9.82808 -9.29068 -9.21105 -9.09432 -9.02550 -8.66857 -8.18141 -7.15021 -6.34204 -4.09839 1.07338 1.56632 2.83670 2.99031 3.10718 3.26430 3.37695 3.49066 3.99024 4.04008 4.12083 4.25069 4.36354 4.55576 4.71476 4.78433 4.88272 5.00524 5.04776 5.15127 5.27043 5.31314 5.45753 5.59900 5.62818 5.65581 5.76212 5.81913 5.91259 6.15618 6.35044 6.49098 6.54365 6.72895 6.80714 7.01123 7.08350 7.44247 7.89902 8.23354 8.43136 9.09666 10.75229 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025236 B = 0.003300 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.258712 B = 8482.079038 C = 9051.730169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.095 3.905 3 Si 0.858 3.142 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.239 1.239 7 C -0.509 4.509 8 H 0.091 0.909 9 S -0.112 6.112 10 C -0.085 4.085 11 C -0.051 4.051 12 C -0.140 4.140 13 C -0.086 4.086 14 C -0.154 4.154 15 C 0.564 3.436 16 O -0.534 6.534 17 N -0.721 5.721 18 C 0.124 3.876 19 H 0.113 0.887 20 C -0.142 4.142 21 C 0.074 3.926 22 H 0.094 0.906 23 N -0.831 5.831 24 C -0.191 4.191 25 C -0.017 4.017 26 H 0.272 0.728 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.399 0.601 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.346 0.654 34 H 0.345 0.655 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.249 -18.514 -4.750 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.163 1.163 7 C -0.656 4.656 8 H 0.109 0.891 9 S 0.122 5.878 10 C -0.196 4.196 11 C -0.072 4.072 12 C -0.159 4.159 13 C -0.105 4.105 14 C -0.159 4.159 15 C 0.353 3.647 16 O -0.411 6.411 17 N -0.373 5.373 18 C 0.019 3.981 19 H 0.130 0.870 20 C -0.180 4.180 21 C -0.039 4.039 22 H 0.112 0.888 23 N -0.360 5.360 24 C -0.233 4.233 25 C -0.038 4.038 26 H 0.082 0.918 27 H 0.151 0.849 28 H 0.144 0.856 29 H 0.136 0.864 30 H 0.235 0.765 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.319 -17.411 -5.309 21.435 hybrid contribution -1.680 -0.006 0.378 1.722 sum 9.639 -17.417 -4.931 20.508 Atomic orbital electron populations 1.69924 1.05876 1.27824 1.47569 1.24744 0.94515 0.98861 0.93263 0.86730 0.81586 0.83461 0.79976 1.19013 1.19781 1.16315 1.22241 0.86720 0.97702 1.58965 0.89114 1.83074 1.11259 0.97836 1.95641 1.22202 1.02224 1.01060 0.94080 1.21909 0.93478 0.93064 0.98758 1.21051 1.02733 0.95111 0.97041 1.21170 0.98436 0.98586 0.92272 1.19847 1.08738 0.95008 0.92283 1.18438 0.75531 0.81617 0.89107 1.90766 1.48760 1.63083 1.38522 1.45863 1.73832 1.08752 1.08839 1.22503 0.96229 0.93026 0.86361 0.86956 1.23475 0.99120 0.95365 1.00080 1.22294 0.95087 0.98638 0.87929 0.88758 1.58691 1.50884 1.21759 1.04648 1.24334 0.97961 0.98632 1.02326 1.21899 0.91194 0.92675 0.98055 0.91792 0.84875 0.85594 0.86354 0.76478 0.89924 0.89103 0.84105 0.84199 0.89264 0.91090 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.34 13.97 55.49 0.77 -25.57 16 2 C 0.10 2.75 5.50 -17.46 -0.10 2.65 16 3 Si 0.86 21.04 27.74 -169.99 -4.71 16.33 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.24 -5.67 6.74 56.52 0.38 -5.29 16 7 C -0.51 -14.64 10.01 30.91 0.31 -14.33 16 8 H 0.09 2.84 8.02 -52.49 -0.42 2.41 16 9 S -0.11 -2.72 19.38 -107.50 -2.08 -4.80 16 10 C -0.09 -1.77 5.45 -38.99 -0.21 -1.98 16 11 C -0.05 -0.88 9.79 -39.25 -0.38 -1.27 16 12 C -0.14 -1.92 10.02 -39.67 -0.40 -2.32 16 13 C -0.09 -1.13 9.54 -39.12 -0.37 -1.50 16 14 C -0.15 -2.54 5.87 -105.00 -0.62 -3.15 16 15 C 0.56 8.97 7.77 -12.32 -0.10 8.87 16 16 O -0.53 -10.48 15.96 5.32 0.08 -10.40 16 17 N -0.72 -8.05 5.32 -53.95 -0.29 -8.33 16 18 C 0.12 1.22 3.87 -67.12 -0.26 0.96 16 19 H 0.11 1.30 7.07 -51.93 -0.37 0.93 16 20 C -0.14 -1.02 7.62 -25.92 -0.20 -1.22 16 21 C 0.07 0.51 5.18 -66.90 -0.35 0.17 16 22 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 23 N -0.83 -5.79 9.64 -3.98 -0.04 -5.83 16 24 C -0.19 -1.63 7.60 -25.92 -0.20 -1.83 16 25 C -0.02 -0.33 9.34 -38.92 -0.36 -0.70 16 26 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.13 2.17 8.06 -52.49 -0.42 1.74 16 28 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 29 H 0.12 1.06 6.39 -52.49 -0.34 0.72 16 30 H 0.40 3.33 6.74 -40.82 -0.28 3.05 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.52 8.11 -51.93 -0.42 0.10 16 33 H 0.35 1.91 9.08 -39.29 -0.36 1.56 16 34 H 0.34 2.45 8.15 -39.29 -0.32 2.13 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.14 3.02 7.65 -52.49 -0.40 2.62 16 LS Contribution 328.72 15.07 4.95 4.95 Total: -1.00 -33.28 328.72 -9.13 -42.41 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.59 Total: 6.88 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -3.23 Total: -15.64 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.45 Total: -39.73 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.71 Total: 16.33 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -2.08 Total: -4.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.28 -9.13 -42.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.533 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds