Wall clock time and date at job start Tue Mar 31 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99710 * 2 1 4 4 H 1.48502 * 109.46913 * 269.99877 * 3 2 1 5 5 H 1.48498 * 109.47221 * 29.99871 * 3 2 1 6 6 H 1.48494 * 109.47204 * 150.00068 * 3 2 1 7 7 C 1.38725 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99960 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00178 * 359.97438 * 7 2 1 10 10 C 1.76201 * 100.00087 * 185.01305 * 9 7 2 11 11 C 1.39220 * 120.01626 * 265.00191 * 10 9 7 12 12 C 1.38139 * 120.20092 * 180.02562 * 11 10 9 13 13 C 1.38088 * 120.24315 * 0.02562 * 12 11 10 14 14 C 1.39635 * 120.03658 * 0.02665 * 13 12 11 15 15 C 1.47864 * 120.09978 * 179.97438 * 14 13 12 16 16 O 1.21553 * 119.99613 * 180.02562 * 15 14 13 17 17 N 1.34777 * 120.00001 * 0.02562 * 15 14 13 18 18 C 1.46502 * 119.99844 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.46903 * 179.97438 * 18 17 15 20 20 C 1.31003 * 119.99942 * 127.15525 * 19 18 17 21 21 C 1.50698 * 119.99953 * 7.56442 * 20 19 18 22 22 N 1.46896 * 109.47291 * 127.00215 * 21 20 19 23 23 C 1.38832 * 120.02254 * 85.04633 * 10 9 7 24 24 H 0.97000 * 120.00541 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.90098 * 0.04450 * 11 10 9 26 26 H 1.07999 * 119.88028 * 179.97438 * 12 11 10 27 27 H 1.07992 * 119.98309 * 179.97438 * 13 12 11 28 28 H 0.97000 * 119.99745 * 0.02562 * 17 15 14 29 29 H 1.08998 * 109.46852 * 299.99903 * 18 17 15 30 30 H 1.09004 * 109.46929 * 60.00087 * 18 17 15 31 31 H 1.07999 * 120.00148 * 307.16027 * 19 18 17 32 32 H 1.08000 * 120.00330 * 187.55813 * 20 19 18 33 33 H 1.09004 * 109.46892 * 247.00688 * 21 20 19 34 34 H 1.08998 * 109.47019 * 6.99842 * 21 20 19 35 35 H 1.00902 * 110.99970 * 56.04726 * 22 21 20 36 36 H 1.00903 * 110.99730 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.11960 * 0.25947 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0099 -1.2014 0.0005 8 1 3.0899 -1.2013 0.0010 9 16 1.1291 -2.7273 0.0019 10 6 2.4732 -3.8564 0.1538 11 6 3.0275 -4.4365 -0.9840 12 6 4.0810 -5.3226 -0.8694 13 6 4.5911 -5.6394 0.3741 14 6 4.0421 -5.0644 1.5220 15 6 4.5869 -5.4031 2.8543 16 8 4.1073 -4.9017 3.8524 17 7 5.6152 -6.2677 2.9619 18 6 6.1553 -6.6028 4.2819 19 6 7.2893 -7.5829 4.1264 20 6 8.4525 -7.3309 4.6738 21 6 8.6106 -6.1512 5.5981 22 7 9.1990 -6.5990 6.8674 23 6 2.9796 -4.1689 1.4081 24 1 -0.4851 0.8400 -0.0004 25 1 2.6328 -4.1927 -1.9593 26 1 4.5067 -5.7698 -1.7554 27 1 5.4145 -6.3330 0.4589 28 1 5.9981 -6.6674 2.1654 29 1 6.5211 -5.6970 4.7654 30 1 5.3707 -7.0494 4.8928 31 1 7.1432 -8.4931 3.5637 32 1 9.2982 -7.9687 4.4628 33 1 9.2644 -5.4120 5.1352 34 1 7.6344 -5.7048 5.7876 35 1 10.0754 -7.0743 6.7120 36 1 9.3156 -5.8254 7.5047 37 1 2.5484 -3.7242 2.2928 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:31 Heat of formation + Delta-G solvation = 6.560576 kcal Electronic energy + Delta-G solvation = -19444.236991 eV Core-core repulsion = 16312.859384 eV Total energy + Delta-G solvation = -3131.377607 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.97682 -38.00493 -37.05609 -34.67414 -32.50586 -32.42603 -30.79306 -30.48641 -26.78296 -25.56789 -24.76100 -23.27780 -22.17496 -20.44964 -19.40627 -18.12225 -17.31637 -16.74603 -16.06119 -15.89463 -15.36546 -15.13173 -14.98286 -14.84748 -14.62626 -14.26526 -13.63725 -13.41339 -13.34025 -12.93110 -12.84092 -12.57234 -12.20018 -11.65630 -11.15887 -11.13220 -11.08164 -11.05843 -10.70460 -10.08688 -9.92485 -9.68518 -9.21074 -9.16149 -9.02620 -8.90669 -8.57656 -8.02949 -6.71009 -6.28296 -4.02241 1.16505 1.61801 1.66799 3.04298 3.19414 3.22277 3.26538 3.29675 3.48515 4.09138 4.26352 4.26738 4.35212 4.61536 4.86473 4.88685 5.03391 5.07393 5.09133 5.23951 5.34418 5.47330 5.48044 5.55430 5.74591 5.87640 5.99144 6.11640 6.23719 6.25827 6.43167 6.58925 6.63550 6.63850 6.93458 6.97132 7.19181 7.49237 7.57803 8.28719 8.32967 9.17500 10.78471 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.003185 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.475160 B = 8790.087451 C = 9651.874567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.073 3.927 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.519 4.519 8 H 0.076 0.924 9 S -0.035 6.035 10 C -0.107 4.107 11 C -0.055 4.055 12 C -0.141 4.141 13 C -0.090 4.090 14 C -0.154 4.154 15 C 0.563 3.437 16 O -0.534 6.534 17 N -0.729 5.729 18 C 0.140 3.860 19 C -0.166 4.166 20 C -0.133 4.133 21 C 0.071 3.929 22 N -0.846 5.846 23 C -0.019 4.019 24 H 0.270 0.730 25 H 0.131 0.869 26 H 0.123 0.877 27 H 0.117 0.883 28 H 0.399 0.601 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.037 0.963 34 H 0.090 0.910 35 H 0.339 0.661 36 H 0.345 0.655 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.022 -14.798 4.604 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.136 4.136 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.667 4.667 8 H 0.094 0.906 9 S 0.200 5.800 10 C -0.217 4.217 11 C -0.076 4.076 12 C -0.161 4.161 13 C -0.109 4.109 14 C -0.159 4.159 15 C 0.351 3.649 16 O -0.411 6.411 17 N -0.382 5.382 18 C 0.017 3.983 19 C -0.185 4.185 20 C -0.152 4.152 21 C -0.058 4.058 22 N -0.376 5.376 23 C -0.040 4.040 24 H 0.080 0.920 25 H 0.149 0.851 26 H 0.141 0.859 27 H 0.135 0.865 28 H 0.235 0.765 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.055 0.945 34 H 0.108 0.892 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.655 -14.901 5.348 21.573 hybrid contribution 2.981 1.494 -0.571 3.383 sum 17.636 -13.406 4.777 22.663 Atomic orbital electron populations 1.69985 1.05901 1.27680 1.46994 1.25003 0.95126 0.99113 0.94346 0.86118 0.79531 0.81245 0.78416 1.20173 1.20639 1.19571 1.22834 0.94873 0.90185 1.58783 0.90627 1.83608 1.04255 0.97147 1.95016 1.22853 1.02953 1.02076 0.93851 1.21960 0.93365 0.93494 0.98822 1.21057 0.98184 0.99934 0.96933 1.21137 0.98770 0.98696 0.92311 1.19853 1.00779 1.03174 0.92090 1.18429 0.79047 0.78179 0.89218 1.90778 1.59537 1.52365 1.38440 1.45858 1.35747 1.47406 1.09186 1.20461 0.94802 0.97767 0.85242 1.22833 0.94060 0.99241 1.02358 1.22752 0.97163 0.98313 0.96994 1.21110 1.00904 0.94725 0.89096 1.58709 1.32798 1.32963 1.13084 1.21954 0.91879 0.92005 0.98204 0.92048 0.85063 0.85858 0.86519 0.76520 0.90300 0.90588 0.86231 0.86786 0.94492 0.89179 0.84852 0.84199 0.84296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.55 13.22 55.49 0.73 -24.82 16 2 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.71 9.46 30.91 0.29 -14.42 16 8 H 0.08 2.12 7.79 -52.49 -0.41 1.71 16 9 S -0.03 -0.90 21.41 -107.50 -2.30 -3.20 16 10 C -0.11 -2.29 5.45 -39.00 -0.21 -2.50 16 11 C -0.06 -0.99 9.79 -39.25 -0.38 -1.37 16 12 C -0.14 -2.01 10.02 -39.67 -0.40 -2.41 16 13 C -0.09 -1.23 9.54 -39.12 -0.37 -1.60 16 14 C -0.15 -2.61 5.87 -105.00 -0.62 -3.23 16 15 C 0.56 9.19 7.77 -12.32 -0.10 9.10 16 16 O -0.53 -10.74 16.34 5.32 0.09 -10.65 16 17 N -0.73 -8.51 5.50 -62.42 -0.34 -8.85 16 18 C 0.14 1.47 5.76 -5.19 -0.03 1.44 16 19 C -0.17 -1.28 9.63 -36.03 -0.35 -1.63 16 20 C -0.13 -0.96 9.77 -36.03 -0.35 -1.31 16 21 C 0.07 0.55 6.87 -4.98 -0.03 0.51 16 22 N -0.85 -5.76 9.61 -11.41 -0.11 -5.87 16 23 C -0.02 -0.38 9.34 -38.92 -0.36 -0.75 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 26 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.12 1.11 6.39 -52.49 -0.34 0.77 16 28 H 0.40 3.54 6.49 -40.82 -0.26 3.27 16 29 H 0.08 0.89 5.30 -51.93 -0.28 0.61 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.11 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.09 0.80 5.29 -51.93 -0.27 0.53 16 35 H 0.34 1.74 8.99 -39.29 -0.35 1.39 16 36 H 0.35 1.91 9.08 -39.29 -0.36 1.56 16 37 H 0.14 3.10 7.65 -52.48 -0.40 2.69 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -33.46 335.54 -9.25 -42.71 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.34 Total: 5.34 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -3.01 Total: -16.21 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.28 Total: -39.54 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.46 -9.25 -42.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.271 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds