Wall clock time and date at job start Tue Mar 31 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99710 * 2 1 4 4 H 1.48502 * 109.46913 * 269.99877 * 3 2 1 5 5 H 1.48498 * 109.47221 * 29.99871 * 3 2 1 6 6 H 1.48494 * 109.47204 * 150.00068 * 3 2 1 7 7 C 1.38725 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99960 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00178 * 359.97438 * 7 2 1 10 10 C 1.76201 * 100.00087 * 185.01305 * 9 7 2 11 11 C 1.39220 * 120.01626 * 265.00191 * 10 9 7 12 12 C 1.38139 * 120.20092 * 180.02562 * 11 10 9 13 13 C 1.38088 * 120.24315 * 0.02562 * 12 11 10 14 14 C 1.39635 * 120.03658 * 0.02665 * 13 12 11 15 15 C 1.47864 * 120.09978 * 179.97438 * 14 13 12 16 16 O 1.21553 * 119.99613 * 180.02562 * 15 14 13 17 17 N 1.34777 * 120.00001 * 0.02562 * 15 14 13 18 18 C 1.46502 * 119.99844 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.46903 * 179.97438 * 18 17 15 20 20 C 1.31003 * 119.99942 * 127.15525 * 19 18 17 21 21 C 1.50698 * 119.99953 * 7.56442 * 20 19 18 22 22 N 1.46896 * 109.47291 * 127.00215 * 21 20 19 23 23 C 1.38832 * 120.02254 * 85.04633 * 10 9 7 24 24 H 0.97000 * 120.00541 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.90098 * 0.04450 * 11 10 9 26 26 H 1.07999 * 119.88028 * 179.97438 * 12 11 10 27 27 H 1.07992 * 119.98309 * 179.97438 * 13 12 11 28 28 H 0.97000 * 119.99745 * 0.02562 * 17 15 14 29 29 H 1.08998 * 109.46852 * 299.99903 * 18 17 15 30 30 H 1.09004 * 109.46929 * 60.00087 * 18 17 15 31 31 H 1.07999 * 120.00148 * 307.16027 * 19 18 17 32 32 H 1.08000 * 120.00330 * 187.55813 * 20 19 18 33 33 H 1.09004 * 109.46892 * 247.00688 * 21 20 19 34 34 H 1.08998 * 109.47019 * 6.99842 * 21 20 19 35 35 H 1.00902 * 110.99970 * 56.04726 * 22 21 20 36 36 H 1.00903 * 110.99730 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.11960 * 0.25947 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0099 -1.2014 0.0005 8 1 3.0899 -1.2013 0.0010 9 16 1.1291 -2.7273 0.0019 10 6 2.4732 -3.8564 0.1538 11 6 3.0275 -4.4365 -0.9840 12 6 4.0810 -5.3226 -0.8694 13 6 4.5911 -5.6394 0.3741 14 6 4.0421 -5.0644 1.5220 15 6 4.5869 -5.4031 2.8543 16 8 4.1073 -4.9017 3.8524 17 7 5.6152 -6.2677 2.9619 18 6 6.1553 -6.6028 4.2819 19 6 7.2893 -7.5829 4.1264 20 6 8.4525 -7.3309 4.6738 21 6 8.6106 -6.1512 5.5981 22 7 9.1990 -6.5990 6.8674 23 6 2.9796 -4.1689 1.4081 24 1 -0.4851 0.8400 -0.0004 25 1 2.6328 -4.1927 -1.9593 26 1 4.5067 -5.7698 -1.7554 27 1 5.4145 -6.3330 0.4589 28 1 5.9981 -6.6674 2.1654 29 1 6.5211 -5.6970 4.7654 30 1 5.3707 -7.0494 4.8928 31 1 7.1432 -8.4931 3.5637 32 1 9.2982 -7.9687 4.4628 33 1 9.2644 -5.4120 5.1352 34 1 7.6344 -5.7048 5.7876 35 1 10.0754 -7.0743 6.7120 36 1 9.3156 -5.8254 7.5047 37 1 2.5484 -3.7242 2.2928 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:30 Heat of formation + Delta-G solvation = -18.276073 kcal Electronic energy + Delta-G solvation = -19445.313989 eV Core-core repulsion = 16312.859384 eV Total energy + Delta-G solvation = -3132.454605 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.24733 -39.26170 -37.87292 -35.63049 -34.66164 -33.26766 -32.04919 -31.80592 -27.77852 -27.65999 -25.41374 -24.52354 -23.53871 -21.70787 -20.36294 -19.73207 -18.74015 -17.63384 -17.08773 -16.94460 -16.92937 -16.62845 -16.21371 -15.78554 -15.67223 -15.54688 -15.11464 -14.66550 -14.55222 -14.21027 -13.84132 -13.53026 -13.26680 -13.16236 -13.07962 -12.97058 -12.66362 -12.39950 -11.76134 -11.70716 -11.29658 -11.19325 -10.76687 -10.53152 -10.18530 -9.89472 -9.70386 -9.51459 -8.81393 -8.39995 -6.20172 -0.18772 0.25445 1.00224 1.28774 1.36816 1.45441 1.64528 1.79025 2.20462 2.27444 2.80019 2.92957 3.41048 3.63112 3.73043 3.82614 3.94378 4.00762 4.05502 4.26893 4.35828 4.37435 4.48288 4.61471 4.66695 4.74284 4.92220 4.95292 5.22034 5.27249 5.32771 5.37680 5.50700 5.54181 5.78568 5.86508 6.14880 6.14921 6.46053 6.55499 7.00231 7.11826 8.67172 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.003185 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.475160 B = 8790.087451 C = 9651.874567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.019 3.981 3 Si 0.993 3.007 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.067 0.933 9 S -0.096 6.096 10 C -0.129 4.129 11 C -0.063 4.063 12 C -0.120 4.120 13 C -0.062 4.062 14 C -0.157 4.157 15 C 0.560 3.440 16 O -0.584 6.584 17 N -0.701 5.701 18 C 0.137 3.863 19 C -0.168 4.168 20 C -0.125 4.125 21 C 0.067 3.933 22 N -0.854 5.854 23 C -0.046 4.046 24 H 0.274 0.726 25 H 0.136 0.864 26 H 0.177 0.823 27 H 0.176 0.824 28 H 0.418 0.582 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.350 0.650 36 H 0.351 0.649 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.876 -16.902 3.319 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.186 4.186 3 Si 0.814 3.186 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.683 4.683 8 H 0.085 0.915 9 S 0.138 5.862 10 C -0.240 4.240 11 C -0.084 4.084 12 C -0.139 4.139 13 C -0.080 4.080 14 C -0.162 4.162 15 C 0.348 3.652 16 O -0.465 6.465 17 N -0.354 5.354 18 C 0.015 3.985 19 C -0.187 4.187 20 C -0.144 4.144 21 C -0.063 4.063 22 N -0.385 5.385 23 C -0.068 4.068 24 H 0.083 0.917 25 H 0.153 0.847 26 H 0.195 0.805 27 H 0.193 0.807 28 H 0.257 0.743 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 18.549 -17.054 4.040 25.520 hybrid contribution 1.912 1.969 -0.120 2.747 sum 20.462 -15.086 3.920 25.722 Atomic orbital electron populations 1.70109 1.07520 1.28817 1.47840 1.26020 0.96073 1.02909 0.93627 0.85036 0.77997 0.76395 0.79124 1.18580 1.19715 1.19356 1.23056 0.94613 0.91607 1.58998 0.91485 1.83487 1.08680 0.98630 1.95375 1.22495 1.03026 1.02820 0.95695 1.22086 0.94538 0.94170 0.97574 1.21569 0.95747 0.97539 0.99087 1.21734 0.98580 0.97248 0.90464 1.19949 0.99775 1.02533 0.93969 1.18438 0.79794 0.78627 0.88325 1.90760 1.61406 1.54528 1.39835 1.45652 1.33751 1.45358 1.10687 1.20529 0.95511 0.98273 0.84226 1.22767 0.92833 0.99390 1.03675 1.22958 0.97678 0.97916 0.95885 1.21093 1.00156 0.95303 0.89769 1.58697 1.33581 1.33422 1.12823 1.21626 0.94170 0.94391 0.96617 0.91680 0.84651 0.80543 0.80722 0.74345 0.91310 0.91882 0.83856 0.84464 0.94030 0.91064 0.83650 0.83603 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.21 13.22 21.63 0.29 -54.92 16 2 C 0.02 1.09 5.49 84.84 0.47 1.56 16 3 Si 0.99 45.00 29.55 68.60 2.03 47.03 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.54 -31.78 9.46 67.94 0.64 -31.13 16 8 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 9 S -0.10 -5.34 21.41 -56.49 -1.21 -6.55 16 10 C -0.13 -5.76 5.45 22.65 0.12 -5.64 16 11 C -0.06 -2.17 9.79 22.48 0.22 -1.95 16 12 C -0.12 -2.85 10.02 22.21 0.22 -2.63 16 13 C -0.06 -1.39 9.54 22.57 0.22 -1.18 16 14 C -0.16 -5.17 5.87 -20.11 -0.12 -5.29 16 15 C 0.56 17.99 7.77 86.79 0.67 18.66 16 16 O -0.58 -24.55 16.34 -3.88 -0.06 -24.61 16 17 N -0.70 -14.57 5.50 -469.68 -2.58 -17.15 16 18 C 0.14 2.67 5.76 85.63 0.49 3.17 16 19 C -0.17 -2.04 9.63 25.64 0.25 -1.79 16 20 C -0.13 -1.41 9.77 25.64 0.25 -1.16 16 21 C 0.07 0.91 6.87 85.56 0.59 1.50 16 22 N -0.85 -10.23 9.61 -190.01 -1.83 -12.06 16 23 C -0.05 -1.99 9.34 22.70 0.21 -1.78 16 24 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 25 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 26 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 27 H 0.18 1.95 6.39 -2.91 -0.02 1.93 16 28 H 0.42 5.33 6.49 -92.71 -0.60 4.73 16 29 H 0.07 1.53 5.30 -2.39 -0.01 1.51 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 31 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 33 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.07 1.25 5.29 -2.39 -0.01 1.24 16 35 H 0.35 2.82 8.99 -89.69 -0.81 2.01 16 36 H 0.35 3.50 9.08 -89.69 -0.81 2.69 16 37 H 0.10 5.00 7.65 -2.91 -0.02 4.98 16 Total: -1.00 -79.99 335.54 -0.22 -80.22 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -1.09 Total: 15.69 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 4.24 Total: -27.65 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -4.12 Total: -84.13 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.06 Total: -24.61 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -1.21 Total: -6.55 kcal Total: -79.99 -0.22 -80.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.943 kcal (2) G-P(sol) polarization free energy of solvation -79.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds