Wall clock time and date at job start Tue Mar 31 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86790 * 120.00147 * 2 1 4 4 H 1.48498 * 109.47114 * 269.99569 * 3 2 1 5 5 H 1.48501 * 109.47436 * 29.99687 * 3 2 1 6 6 H 1.48508 * 109.47443 * 149.99489 * 3 2 1 7 7 C 1.38733 * 119.99542 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99151 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00568 * 0.02562 * 7 2 1 10 10 C 1.76192 * 99.99913 * 185.11459 * 9 7 2 11 11 C 1.39220 * 120.02164 * 85.48490 * 10 9 7 12 12 C 1.38134 * 120.20594 * 180.29262 * 11 10 9 13 13 C 1.38083 * 120.24233 * 359.44841 * 12 11 10 14 14 C 1.39640 * 120.03554 * 0.54628 * 13 12 11 15 15 C 1.47861 * 120.10155 * 179.74952 * 14 13 12 16 16 O 1.21550 * 120.00336 * 179.97438 * 15 14 13 17 17 N 1.34778 * 120.00106 * 359.97438 * 15 14 13 18 18 C 1.46501 * 120.00025 * 180.02562 * 17 15 14 19 19 H 1.08991 * 110.27180 * 324.35917 * 18 17 15 20 20 C 1.54595 * 110.30438 * 202.16503 * 18 17 15 21 21 C 1.54940 * 102.92058 * 219.12458 * 20 18 17 22 22 N 1.48531 * 103.22730 * 37.41720 * 21 20 18 23 23 C 1.47900 * 105.82065 * 320.79616 * 22 21 20 24 24 C 1.38835 * 120.02232 * 265.49918 * 10 9 7 25 25 H 0.96993 * 119.99891 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.89725 * 0.02562 * 11 10 9 27 27 H 1.08003 * 119.88489 * 179.71892 * 12 11 10 28 28 H 1.08006 * 119.98630 * 180.25164 * 13 12 11 29 29 H 0.97001 * 119.99583 * 359.97438 * 17 15 14 30 30 H 1.09002 * 110.73074 * 337.48848 * 20 18 17 31 31 H 1.09009 * 110.72141 * 100.76860 * 20 18 17 32 32 H 1.09005 * 110.66734 * 278.98367 * 21 20 18 33 33 H 1.09006 * 110.66531 * 155.85312 * 21 20 18 34 34 H 1.00908 * 110.99550 * 81.30594 * 22 21 20 35 35 H 1.09002 * 109.91593 * 265.97671 * 23 22 21 36 36 H 1.08996 * 109.91864 * 144.67950 * 23 22 21 37 37 H 1.08002 * 120.11736 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7002 7 6 2.0098 -1.2015 0.0005 8 1 3.0899 -1.2014 0.0010 9 16 1.1289 -2.7275 0.0005 10 6 2.4726 -3.8565 0.1560 11 6 2.9715 -4.1763 1.4158 12 6 4.0288 -5.0563 1.5417 13 6 4.5905 -5.6335 0.4201 14 6 4.0981 -5.3200 -0.8484 15 6 4.7022 -5.9330 -2.0507 16 8 4.2718 -5.6592 -3.1540 17 7 5.7301 -6.7953 -1.9234 18 6 6.3290 -7.4022 -3.1147 19 1 5.5629 -7.5967 -3.8651 20 6 7.0605 -8.7115 -2.7397 21 6 8.3319 -8.6635 -3.6240 22 7 8.6983 -7.2241 -3.6146 23 6 7.4211 -6.4824 -3.6915 24 6 3.0347 -4.4276 -0.9777 25 1 -0.4850 0.8400 -0.0004 26 1 2.5333 -3.7316 2.2971 27 1 4.4146 -5.2972 2.5212 28 1 5.4144 -6.3241 0.5237 29 1 6.0738 -7.0135 -1.0430 30 1 7.3259 -8.7160 -1.6825 31 1 6.4499 -9.5794 -2.9888 32 1 8.1084 -8.9970 -4.6375 33 1 9.1279 -9.2661 -3.1864 34 1 9.2050 -6.9855 -2.7752 35 1 7.1934 -6.2418 -4.7300 36 1 7.4864 -5.5683 -3.1015 37 1 2.6502 -4.1809 -1.9563 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052612.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:33 Heat of formation + Delta-G solvation = -34.712374 kcal Electronic energy + Delta-G solvation = -19993.044095 eV Core-core repulsion = 16859.876759 eV Total energy + Delta-G solvation = -3133.167337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.44939 -39.74475 -38.73653 -35.23427 -34.66572 -32.37374 -31.92667 -30.37691 -29.03614 -27.75606 -25.05462 -23.71116 -22.94754 -21.85895 -21.43339 -20.01358 -19.01283 -18.00074 -17.30842 -16.94493 -16.74194 -16.59680 -16.26079 -15.73646 -15.57922 -15.17281 -14.90765 -14.70815 -14.61185 -13.87794 -13.33790 -13.25521 -13.11755 -12.99888 -12.98073 -12.67142 -12.63802 -12.43372 -12.38189 -11.84606 -11.74743 -11.25616 -11.15769 -10.78198 -10.56535 -9.99281 -9.72945 -9.47724 -8.83116 -8.40450 -6.20974 -0.21222 0.22955 1.29008 1.36823 1.45543 1.62671 1.75816 2.00016 2.23270 2.77460 2.92571 3.25004 3.40350 3.53235 3.68013 3.88625 3.91973 3.99768 4.05302 4.25070 4.33199 4.43920 4.46815 4.55618 4.66856 4.87937 4.89780 4.92015 5.00988 5.05787 5.18792 5.29759 5.37053 5.41024 5.48624 5.68484 5.83684 6.14493 6.39962 6.42654 6.99748 7.09840 8.66867 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023504 B = 0.003353 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.990672 B = 8349.429216 C = 8826.143216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.067 0.933 9 S -0.099 6.099 10 C -0.128 4.128 11 C -0.064 4.064 12 C -0.121 4.121 13 C -0.061 4.061 14 C -0.157 4.157 15 C 0.563 3.437 16 O -0.579 6.579 17 N -0.700 5.700 18 C 0.111 3.889 19 H 0.074 0.926 20 C -0.151 4.151 21 C 0.044 3.956 22 N -0.680 5.680 23 C 0.035 3.965 24 C -0.045 4.045 25 H 0.274 0.726 26 H 0.130 0.870 27 H 0.175 0.825 28 H 0.175 0.825 29 H 0.416 0.584 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.348 0.652 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.629 -18.804 1.642 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.683 4.683 8 H 0.085 0.915 9 S 0.136 5.864 10 C -0.239 4.239 11 C -0.085 4.085 12 C -0.140 4.140 13 C -0.080 4.080 14 C -0.162 4.162 15 C 0.351 3.649 16 O -0.460 6.460 17 N -0.353 5.353 18 C 0.005 3.995 19 H 0.093 0.907 20 C -0.190 4.190 21 C -0.085 4.085 22 N -0.308 5.308 23 C -0.097 4.097 24 C -0.067 4.067 25 H 0.083 0.917 26 H 0.148 0.852 27 H 0.192 0.808 28 H 0.192 0.808 29 H 0.255 0.745 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.164 0.836 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 17.209 -18.617 0.055 25.352 hybrid contribution 0.593 1.388 0.919 1.767 sum 17.802 -17.230 0.974 24.793 Atomic orbital electron populations 1.70110 1.07541 1.28836 1.47801 1.26017 0.96063 1.02885 0.93590 0.85030 0.78306 0.76391 0.78794 1.19638 1.19350 1.18636 1.23050 0.94610 0.91506 1.59142 0.91451 1.83529 1.08441 0.98686 1.95742 1.22473 1.02926 1.02474 0.96031 1.22087 0.95210 0.95218 0.95985 1.21552 0.95407 0.96353 1.00720 1.21707 0.98723 0.97778 0.89765 1.19958 0.99623 1.02087 0.94545 1.18410 0.79718 0.78683 0.88094 1.90763 1.63687 1.62760 1.28779 1.45809 1.33678 1.44952 1.10872 1.22387 0.95753 0.93801 0.87544 0.90746 1.23359 0.97903 0.95484 1.02251 1.23190 0.96006 0.89069 1.00236 1.62679 1.18094 1.05531 1.44490 1.23056 0.88652 0.96875 1.01097 1.21626 0.93613 0.93685 0.97765 0.91667 0.85174 0.80751 0.80790 0.74508 0.88508 0.88919 0.90259 0.87809 0.83573 0.91581 0.91938 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.81 13.22 21.64 0.29 -54.53 16 2 C 0.02 1.13 5.49 84.84 0.47 1.60 16 3 Si 0.99 44.56 29.55 68.60 2.03 46.58 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.54 -31.56 9.46 67.94 0.64 -30.91 16 8 H 0.07 3.92 7.79 -2.91 -0.02 3.90 16 9 S -0.10 -5.44 21.41 -56.49 -1.21 -6.65 16 10 C -0.13 -5.66 5.45 22.65 0.12 -5.54 16 11 C -0.06 -2.25 9.79 22.48 0.22 -2.03 16 12 C -0.12 -2.89 10.02 22.21 0.22 -2.66 16 13 C -0.06 -1.34 9.54 22.57 0.22 -1.12 16 14 C -0.16 -4.97 5.87 -20.11 -0.12 -5.09 16 15 C 0.56 17.08 7.77 86.79 0.67 17.76 16 16 O -0.58 -23.20 16.04 -3.87 -0.06 -23.26 16 17 N -0.70 -13.23 4.98 -441.23 -2.20 -15.42 16 18 C 0.11 1.98 3.30 45.87 0.15 2.13 16 19 H 0.07 1.72 7.64 -2.39 -0.02 1.70 16 20 C -0.15 -1.38 6.77 31.80 0.22 -1.17 16 21 C 0.04 0.42 7.55 86.65 0.65 1.07 16 22 N -0.68 -9.58 7.51 -502.19 -3.77 -13.35 16 23 C 0.03 0.66 7.31 86.45 0.63 1.29 16 24 C -0.05 -1.89 9.34 22.70 0.21 -1.68 16 25 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 26 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 27 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.17 1.80 6.40 -2.91 -0.02 1.78 16 29 H 0.42 4.62 6.37 -92.71 -0.59 4.02 16 30 H 0.10 0.50 7.74 -2.39 -0.02 0.48 16 31 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.35 3.70 8.92 -89.69 -0.80 2.90 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.33 7.92 -2.39 -0.02 1.31 16 37 H 0.11 5.00 7.65 -2.91 -0.02 4.98 16 Total: -1.00 -78.31 329.11 -0.90 -79.20 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -0.28 Total: 13.77 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 4.31 Total: -26.35 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -5.68 Total: -83.30 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.06 Total: -23.26 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -5.44 SS G_CDS: -1.21 Total: -6.65 kcal Total: -78.31 -0.90 -79.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052612.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.493 kcal (2) G-P(sol) polarization free energy of solvation -78.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds