Wall clock time and date at job start Tue Mar 31 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 O 1.45198 * 109.46884 * 180.02562 * 11 10 9 13 13 C 1.34764 * 117.00033 * 180.02562 * 12 11 10 14 14 O 1.21527 * 120.00083 * 0.02562 * 13 12 11 15 15 C 1.47278 * 120.00251 * 180.02562 * 13 12 11 16 16 C 1.36651 * 127.12181 * 0.02562 * 15 13 12 17 17 O 1.33611 * 108.64898 * 180.02562 * 16 15 13 18 18 C 1.34577 * 110.88950 * 0.02562 * 17 16 15 19 19 C 1.47932 * 125.57146 * 180.02562 * 18 17 16 20 20 N 1.34201 * 126.69753 * 180.02562 * 19 18 17 21 21 N 1.28987 * 107.24665 * 179.97438 * 20 19 18 22 22 N 1.28718 * 108.99307 * 359.97438 * 21 20 19 23 23 H 0.97003 * 125.31149 * 179.97438 * 22 21 20 24 24 N 1.28860 * 109.36376 * 359.76599 * 22 21 20 25 25 C 1.35532 * 108.85200 * 359.71142 * 18 17 16 26 26 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 28 28 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 29 29 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 30 30 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 31 31 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 32 32 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 33 33 H 1.07998 * 125.67495 * 359.97438 * 16 15 13 34 34 H 1.08007 * 127.07325 * 180.29802 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 8 2.4236 -6.0907 -0.0018 13 6 1.9085 -7.3360 -0.0019 14 8 0.7037 -7.4953 -0.0019 15 6 2.8056 -8.5041 -0.0019 16 6 4.1720 -8.4945 -0.0014 17 8 4.6082 -9.7574 -0.0022 18 6 3.5764 -10.6214 -0.0038 19 6 3.6891 -12.0964 -0.0045 20 7 2.6773 -12.9780 -0.0066 21 7 3.1983 -14.1580 -0.0071 22 7 4.4809 -14.0497 -0.0060 23 1 5.1062 -14.7913 -0.0056 24 7 4.8043 -12.8024 -0.0097 25 6 2.4172 -9.9192 0.0024 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5566 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8725 -3.6048 0.8878 30 1 2.8712 -3.6040 -0.8921 31 1 0.8543 -5.0449 0.8894 32 1 0.8525 -5.0447 -0.8905 33 1 4.7957 -7.6128 -0.0013 34 1 1.4138 -10.3189 0.0074 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592676427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:38 Heat of formation + Delta-G solvation = 46.001596 kcal Electronic energy + Delta-G solvation = -21091.937590 eV Core-core repulsion = 17415.977059 eV Total energy + Delta-G solvation = -3675.960531 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.00827 -43.01780 -39.96070 -36.42531 -35.05024 -34.06357 -34.00666 -33.29859 -31.70632 -30.34532 -27.22071 -25.27225 -24.86835 -24.43094 -22.84789 -21.72574 -20.51202 -20.24389 -19.70808 -18.31859 -17.77325 -17.10425 -16.70379 -16.39561 -16.09733 -15.96241 -15.25693 -14.59879 -14.48453 -14.00895 -13.49719 -13.29818 -12.96242 -12.85242 -12.19999 -12.18385 -11.99749 -11.87087 -11.69769 -11.68357 -10.96375 -10.73894 -10.65833 -10.49872 -10.40633 -10.24402 -9.73539 -9.53016 -9.18686 -9.05478 -8.38927 -6.03821 -4.07082 0.32194 0.73438 1.06831 1.54721 2.02556 2.16524 2.67927 2.99453 3.32115 3.34824 3.36796 3.39207 3.86395 4.23866 4.37024 4.43493 4.75900 4.82436 5.10760 5.18509 5.32027 5.43172 5.56711 5.60822 5.74674 5.81596 5.99974 6.39357 6.43820 6.52070 6.80224 6.96158 7.57258 7.59344 7.70435 7.87939 7.94256 8.34938 8.98900 9.57155 11.07505 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.058630 B = 0.002099 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.458361 B =13339.061558 C =13790.768286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.070 3.930 12 O -0.356 6.356 13 C 0.532 3.468 14 O -0.502 6.502 15 C -0.225 4.225 16 C 0.086 3.914 17 O -0.155 6.155 18 C 0.042 3.958 19 C 0.255 3.745 20 N -0.249 5.249 21 N -0.040 5.040 22 N -0.222 5.222 23 H 0.479 0.521 24 N -0.280 5.280 25 C -0.076 4.076 26 H 0.262 0.738 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.235 0.765 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.377 -27.515 0.007 29.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.002 4.002 12 O -0.273 6.273 13 C 0.376 3.624 14 O -0.392 6.392 15 C -0.227 4.227 16 C 0.014 3.986 17 O -0.049 6.049 18 C -0.009 4.009 19 C -0.024 4.024 20 N -0.124 5.124 21 N -0.035 5.035 22 N -0.069 5.069 23 H 0.334 0.666 24 N -0.132 5.132 25 C -0.099 4.099 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.251 0.749 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 10.920 -28.119 0.002 30.165 hybrid contribution 0.726 1.035 0.001 1.264 sum 11.646 -27.084 0.003 29.482 Atomic orbital electron populations 1.69958 1.06074 1.26886 1.50365 1.25035 0.94892 0.99366 0.95199 0.86601 0.79521 0.82896 0.78640 1.20192 1.21276 1.20197 1.21125 0.93068 0.90677 1.51208 0.92478 1.19053 0.93851 0.90684 0.97762 1.21777 0.99982 0.90893 1.01993 1.23565 0.91133 0.83084 1.02460 1.86515 1.42594 1.14623 1.83550 1.19795 0.86385 0.82875 0.73315 1.90865 1.15759 1.86882 1.45645 1.20581 0.93010 0.92338 1.16818 1.25065 0.94491 0.84594 0.94484 1.83815 1.34974 1.15333 1.70752 1.17465 0.85401 0.84152 1.13847 1.21796 0.85059 0.92413 1.03158 1.76219 1.25016 0.93658 1.17498 1.78992 0.92075 1.17983 1.14473 1.47722 1.06836 1.06753 1.45576 0.66602 1.75158 1.25894 0.90873 1.21285 1.22785 0.99045 0.89573 0.98500 0.92822 0.96179 0.96173 0.92084 0.92074 0.91263 0.91257 0.74863 0.80534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.17 5.53 -26.73 -0.15 -2.32 16 11 C 0.07 1.25 5.48 37.16 0.20 1.45 16 12 O -0.36 -5.57 10.07 -40.67 -0.41 -5.98 16 13 C 0.53 8.07 7.95 34.41 0.27 8.34 16 14 O -0.50 -9.09 16.77 -19.29 -0.32 -9.42 16 15 C -0.22 -2.63 6.30 -103.36 -0.65 -3.28 16 16 C 0.09 0.75 11.92 30.16 0.36 1.11 16 17 O -0.16 -1.48 10.54 6.77 0.07 -1.41 16 18 C 0.04 0.44 7.22 -36.58 -0.26 0.17 16 19 C 0.26 2.56 8.20 -156.25 -1.28 1.28 16 20 N -0.25 -2.56 12.52 32.08 0.40 -2.16 16 21 N -0.04 -0.32 13.46 60.35 0.81 0.49 16 22 N -0.22 -1.18 7.90 60.35 0.48 -0.70 16 23 H 0.48 0.10 8.96 -340.34 -3.05 -2.95 16 24 N -0.28 -2.33 12.41 32.10 0.40 -1.93 16 25 C -0.08 -0.83 10.92 -37.11 -0.41 -1.24 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.24 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.18 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 320.85 15.07 4.84 4.84 Total: -1.00 -34.41 320.85 -6.46 -40.86 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: -5.97 Total: -7.71 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.46 Total: -7.34 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 2.83 Total: -30.17 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.66 Total: -16.81 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.41 -6.46 -40.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.866 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds