Wall clock time and date at job start Tue Mar 31 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 O 1.45198 * 109.46884 * 180.02562 * 11 10 9 13 13 C 1.34764 * 117.00033 * 180.02562 * 12 11 10 14 14 O 1.21527 * 120.00083 * 0.02562 * 13 12 11 15 15 C 1.47278 * 120.00251 * 180.02562 * 13 12 11 16 16 C 1.36651 * 127.12181 * 0.02562 * 15 13 12 17 17 O 1.33611 * 108.64898 * 180.02562 * 16 15 13 18 18 C 1.34577 * 110.88950 * 0.02562 * 17 16 15 19 19 C 1.47932 * 125.57146 * 180.02562 * 18 17 16 20 20 N 1.34201 * 126.69753 * 180.02562 * 19 18 17 21 21 N 1.28987 * 107.24665 * 179.97438 * 20 19 18 22 22 N 1.28718 * 108.99307 * 359.97438 * 21 20 19 23 23 H 0.97003 * 125.31149 * 179.97438 * 22 21 20 24 24 N 1.28860 * 109.36376 * 359.76599 * 22 21 20 25 25 C 1.35532 * 108.85200 * 359.71142 * 18 17 16 26 26 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 28 28 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 29 29 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 30 30 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 31 31 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 32 32 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 33 33 H 1.07998 * 125.67495 * 359.97438 * 16 15 13 34 34 H 1.08007 * 127.07325 * 180.29802 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 8 2.4236 -6.0907 -0.0018 13 6 1.9085 -7.3360 -0.0019 14 8 0.7037 -7.4953 -0.0019 15 6 2.8056 -8.5041 -0.0019 16 6 4.1720 -8.4945 -0.0014 17 8 4.6082 -9.7574 -0.0022 18 6 3.5764 -10.6214 -0.0038 19 6 3.6891 -12.0964 -0.0045 20 7 2.6773 -12.9780 -0.0066 21 7 3.1983 -14.1580 -0.0071 22 7 4.4809 -14.0497 -0.0060 23 1 5.1062 -14.7913 -0.0056 24 7 4.8043 -12.8024 -0.0097 25 6 2.4172 -9.9192 0.0024 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5566 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8725 -3.6048 0.8878 30 1 2.8712 -3.6040 -0.8921 31 1 0.8543 -5.0449 0.8894 32 1 0.8525 -5.0447 -0.8905 33 1 4.7957 -7.6128 -0.0013 34 1 1.4138 -10.3189 0.0074 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592676427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:37 Heat of formation + Delta-G solvation = 22.800452 kcal Electronic energy + Delta-G solvation = -21092.943667 eV Core-core repulsion = 17415.977059 eV Total energy + Delta-G solvation = -3676.966608 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.64202 -43.81477 -41.23128 -37.77893 -35.90228 -35.70115 -34.71655 -34.23238 -33.56296 -31.15888 -29.01376 -26.20095 -25.74546 -25.37231 -24.42267 -22.51124 -22.12342 -21.37056 -20.40770 -19.15180 -18.64852 -18.42135 -18.04111 -17.73895 -17.17282 -16.99155 -16.47317 -16.21548 -15.56570 -15.27725 -14.70141 -14.28030 -14.07112 -13.95696 -13.83532 -13.59753 -13.49540 -12.77932 -12.64165 -12.51468 -12.37308 -12.36127 -12.34931 -12.04853 -11.91512 -11.45025 -11.38268 -11.22891 -11.11265 -10.53654 -9.81282 -8.18760 -6.30088 -0.35274 0.02419 0.17633 0.96148 1.37067 1.38682 1.44197 1.47026 1.54644 1.59701 1.92849 2.43712 2.62262 3.15225 3.17889 3.33897 3.62450 3.90480 4.05515 4.10286 4.12258 4.16675 4.39292 4.46486 4.74701 4.85201 4.87731 4.96338 5.12503 5.38752 5.49031 5.53819 5.61714 5.68402 5.83849 6.22052 6.65328 6.86271 6.92761 7.39315 8.93134 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.058630 B = 0.002099 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.458361 B =13339.061558 C =13790.768286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.024 3.976 10 C -0.092 4.092 11 C 0.079 3.921 12 O -0.347 6.347 13 C 0.536 3.464 14 O -0.541 6.541 15 C -0.256 4.256 16 C 0.126 3.874 17 O -0.151 6.151 18 C 0.043 3.957 19 C 0.241 3.759 20 N -0.276 5.276 21 N -0.043 5.043 22 N -0.190 5.190 23 H 0.499 0.501 24 N -0.280 5.280 25 C -0.084 4.084 26 H 0.264 0.736 27 H -0.004 1.004 28 H -0.004 1.004 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.273 0.727 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.236 -28.088 0.006 31.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.130 4.130 11 C 0.006 3.994 12 O -0.263 6.263 13 C 0.383 3.617 14 O -0.432 6.432 15 C -0.259 4.259 16 C 0.054 3.946 17 O -0.044 6.044 18 C -0.008 4.008 19 C -0.039 4.039 20 N -0.149 5.149 21 N -0.038 5.038 22 N -0.042 5.042 23 H 0.359 0.641 24 N -0.133 5.133 25 C -0.106 4.106 26 H 0.072 0.928 27 H 0.014 0.986 28 H 0.015 0.985 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.289 0.711 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 13.811 -28.742 0.001 31.888 hybrid contribution -0.093 1.066 0.002 1.070 sum 13.718 -27.676 0.003 30.889 Atomic orbital electron populations 1.70103 1.07897 1.27906 1.51520 1.26025 0.95785 1.03561 0.94730 0.85445 0.78165 0.77807 0.79302 1.18997 1.21196 1.19008 1.21611 0.93830 0.91791 1.50712 0.91421 1.18951 0.94378 0.92583 0.95454 1.21456 0.98688 0.89920 1.02929 1.23193 0.90938 0.83241 1.02024 1.86481 1.41527 1.14550 1.83743 1.20271 0.86460 0.83054 0.71945 1.90850 1.17513 1.87137 1.47706 1.20361 0.93910 0.91158 1.20478 1.25722 0.93559 0.85083 0.90261 1.83861 1.34652 1.15503 1.70361 1.17445 0.85188 0.84501 1.13634 1.21797 0.85454 0.92422 1.04204 1.76211 1.25865 0.94263 1.18591 1.78939 0.92916 1.17276 1.14701 1.47787 1.06603 1.06706 1.43109 0.64069 1.75113 1.25407 0.91679 1.21142 1.22781 0.99397 0.89515 0.98939 0.92778 0.98556 0.98547 0.91053 0.91046 0.91826 0.91825 0.71138 0.80861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.02 1.21 4.97 29.85 0.15 1.36 16 10 C -0.09 -3.62 5.53 30.59 0.17 -3.45 16 11 C 0.08 2.82 5.48 71.98 0.39 3.22 16 12 O -0.35 -10.44 10.07 -56.75 -0.57 -11.01 16 13 C 0.54 16.05 7.95 70.20 0.56 16.60 16 14 O -0.54 -20.01 16.77 19.75 0.33 -19.68 16 15 C -0.26 -5.70 6.30 -19.05 -0.12 -5.82 16 16 C 0.13 1.84 11.92 67.45 0.80 2.64 16 17 O -0.15 -2.50 10.54 1.30 0.01 -2.49 16 18 C 0.04 0.84 7.22 24.21 0.17 1.01 16 19 C 0.24 4.55 8.20 137.12 1.12 5.68 16 20 N -0.28 -5.49 12.52 -52.40 -0.66 -6.15 16 21 N -0.04 -0.64 13.46 37.02 0.50 -0.14 16 22 N -0.19 -1.64 7.90 37.02 0.29 -1.35 16 23 H 0.50 -0.99 8.96 -347.51 -3.12 -4.11 16 24 N -0.28 -4.14 12.41 -52.35 -0.65 -4.79 16 25 C -0.08 -1.80 10.92 23.87 0.26 -1.54 16 26 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 27 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 28 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.27 1.68 8.06 -2.91 -0.02 1.65 16 34 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -74.90 320.85 3.83 -71.07 By element: Atomic # 1 Polarization: -2.90 SS G_CDS: -1.95 Total: -4.86 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 4.21 Total: -9.80 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -0.23 Total: -68.70 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.23 Total: -33.18 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -74.90 3.83 -71.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.871 kcal (2) G-P(sol) polarization free energy of solvation -74.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds