Wall clock time and date at job start Tue Mar 31 2020 06:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.33510 * 126.83331 * 2 1 4 4 N 1.20655 * 113.15446 * 180.30246 * 3 2 1 5 5 C 1.30018 * 112.30695 * 359.71117 * 4 3 2 6 6 C 1.50701 * 127.33836 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.46909 * 270.03144 * 6 5 4 8 8 C 1.37361 * 126.83053 * 179.81561 * 2 1 3 9 9 C 1.47397 * 128.56144 * 0.02562 * 8 2 1 10 10 O 1.21629 * 120.00207 * 269.67214 * 9 8 2 11 11 N 1.34778 * 119.99777 * 89.67673 * 9 8 2 12 12 C 1.40561 * 119.99817 * 179.97438 * 11 9 8 13 13 C 1.40653 * 126.08354 * 0.02562 * 12 11 9 14 14 N 1.30913 * 108.39017 * 179.97438 * 13 12 11 15 15 N 1.40070 * 108.40443 * 0.02562 * 14 13 12 16 16 C 1.37322 * 126.06763 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00115 * 179.97438 * 16 15 14 18 18 C 1.38992 * 119.99736 * 359.95468 * 16 15 14 19 19 N 1.31287 * 120.00160 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99638 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47247 * 60.00051 * 20 18 16 22 22 H 1.48501 * 109.46671 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47077 * 299.99890 * 20 18 16 24 24 C 1.35685 * 126.08212 * 180.02562 * 12 11 9 25 25 H 1.08996 * 109.47604 * 270.18035 * 1 2 3 26 26 H 1.09007 * 109.46969 * 30.17936 * 1 2 3 27 27 H 1.09004 * 109.47246 * 150.17157 * 1 2 3 28 28 H 1.09003 * 109.46530 * 30.02949 * 6 5 4 29 29 H 1.08999 * 109.47088 * 150.02854 * 6 5 4 30 30 H 0.96704 * 113.99301 * 179.97438 * 7 6 5 31 31 H 0.96996 * 119.99936 * 0.02562 * 11 9 8 32 32 H 1.07994 * 125.80645 * 0.02562 * 13 12 11 33 33 H 0.96999 * 120.00429 * 179.97438 * 19 18 16 34 34 H 1.08005 * 126.24733 * 359.75097 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3073 1.0686 0.0000 4 7 3.4796 0.7833 -0.0059 5 6 3.6747 -0.5022 -0.0047 6 6 4.9964 -1.2261 -0.0111 7 8 5.4066 -1.4567 -1.3604 8 6 2.3303 -1.0994 0.0035 9 6 1.9586 -2.5258 0.0076 10 8 1.8107 -3.1127 1.0626 11 7 1.7827 -3.1796 -1.1577 12 6 1.4287 -4.5399 -1.1539 13 6 1.2257 -5.3398 -0.0149 14 7 0.9091 -6.5473 -0.4093 15 7 0.8981 -6.5664 -1.8099 16 6 0.6113 -7.6513 -2.6014 17 1 0.6313 -7.5554 -3.6769 18 6 0.2956 -8.8728 -2.0183 19 7 0.2712 -8.9894 -0.7108 20 14 -0.0938 -10.3488 -3.0951 21 1 1.0755 -10.6545 -3.9578 22 1 -0.3962 -11.5219 -2.2363 23 1 -1.2710 -10.0431 -3.9471 24 6 1.2221 -5.3150 -2.2482 25 1 -0.3634 0.0032 1.0276 26 1 -0.3633 0.8884 -0.5167 27 1 -0.3634 -0.8915 -0.5112 28 1 5.7454 -0.6193 0.4977 29 1 4.8904 -2.1805 0.5046 30 1 6.2519 -1.9195 -1.4408 31 1 1.9011 -2.7116 -1.9991 32 1 1.3148 -5.0132 1.0106 33 1 0.0506 -9.8418 -0.3039 34 1 1.2960 -4.9984 -3.2782 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597840720.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:14 Heat of formation + Delta-G solvation = 65.319328 kcal Electronic energy + Delta-G solvation = -22601.484430 eV Core-core repulsion = 18926.361579 eV Total energy + Delta-G solvation = -3675.122851 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.97293 -39.92800 -38.56353 -37.16045 -34.25164 -33.96468 -33.50228 -33.10117 -30.28754 -28.43814 -27.79913 -27.31004 -25.21462 -23.97910 -21.22255 -20.73329 -19.98677 -19.45506 -18.16311 -17.86062 -17.35924 -17.27080 -16.30367 -15.48129 -15.26121 -15.06181 -14.70063 -14.37742 -14.11895 -13.54537 -13.49855 -13.39954 -13.01396 -12.95942 -12.73207 -12.14739 -11.70979 -11.49537 -11.42717 -11.25286 -11.01014 -10.58545 -10.32850 -10.31684 -10.21900 -9.62930 -9.28752 -9.20108 -8.85483 -8.10236 -6.75673 -6.58607 -4.26324 1.24373 1.71015 2.56066 2.77878 2.98724 3.03402 3.07386 3.51747 3.61342 3.75304 3.89790 4.12340 4.36106 4.56799 4.68933 4.89232 4.99415 5.00598 5.02905 5.19537 5.25099 5.32517 5.51235 5.64364 5.79316 6.21600 6.41404 6.84212 6.90933 7.04281 7.19153 7.34918 7.81980 8.08483 8.10194 8.22095 8.56120 8.76131 9.33688 9.62623 10.37234 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028422 B = 0.003532 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.916646 B = 7925.199725 C = 8316.407880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.011 3.989 3 O 0.101 5.899 4 N -0.341 5.341 5 C 0.049 3.951 6 C 0.156 3.844 7 O -0.563 6.563 8 C -0.223 4.223 9 C 0.579 3.421 10 O -0.523 6.523 11 N -0.605 5.605 12 C -0.063 4.063 13 C -0.031 4.031 14 N -0.260 5.260 15 N -0.140 5.140 16 C -0.323 4.323 17 H 0.116 0.884 18 C 0.047 3.953 19 N -0.769 5.769 20 Si 0.935 3.065 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.267 1.267 24 C -0.080 4.080 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.389 0.611 31 H 0.400 0.600 32 H 0.176 0.824 33 H 0.276 0.724 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.657 14.002 -1.676 14.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.052 4.052 3 O 0.036 5.964 4 N -0.046 5.046 5 C -0.113 4.113 6 C 0.078 3.922 7 O -0.369 6.369 8 C -0.231 4.231 9 C 0.363 3.637 10 O -0.400 6.400 11 N -0.247 5.247 12 C -0.168 4.168 13 C -0.207 4.207 14 N -0.091 5.091 15 N 0.092 4.908 16 C -0.456 4.456 17 H 0.134 0.866 18 C -0.170 4.170 19 N -0.396 5.396 20 Si 0.758 3.242 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.231 4.231 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.238 0.762 31 H 0.234 0.766 32 H 0.193 0.807 33 H 0.086 0.914 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.457 13.557 -0.497 14.000 hybrid contribution 0.439 -0.485 -1.078 1.261 sum 3.896 13.072 -1.575 13.731 Atomic orbital electron populations 1.20475 0.82903 1.05161 1.04934 1.24638 0.96045 0.84919 0.99623 1.84520 1.11054 1.33135 1.67706 1.73574 0.96092 1.16580 1.18342 1.24301 0.95388 0.88928 1.02719 1.20144 0.89086 0.98234 0.84782 1.86487 1.43874 1.81466 1.25062 1.22012 0.92349 0.95607 1.13082 1.16617 0.79410 0.83474 0.84224 1.90728 1.51220 1.66900 1.31116 1.42410 1.65612 1.09058 1.07583 1.17243 1.21561 0.83673 0.94373 1.24110 1.06759 0.91124 0.98706 1.78271 1.25173 1.17505 0.88162 1.44555 1.36576 1.05251 1.04378 1.19848 1.48934 0.86561 0.90236 0.86602 1.25639 0.95708 0.99483 0.96200 1.70199 1.34456 1.25689 1.09218 0.85893 0.79499 0.79389 0.79373 1.19138 1.20113 1.19134 1.21259 1.17528 0.87356 0.96992 0.88580 0.89197 0.88477 0.91270 0.90452 0.76233 0.76641 0.80748 0.91358 0.83603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.33 36.00 0.37 -0.31 16 2 C 0.01 0.13 7.55 -34.63 -0.26 -0.13 16 3 O 0.10 1.31 11.06 18.61 0.21 1.52 16 4 N -0.34 -4.91 12.01 34.78 0.42 -4.49 16 5 C 0.05 0.71 7.22 -79.76 -0.58 0.14 16 6 C 0.16 1.90 7.65 36.01 0.28 2.17 16 7 O -0.56 -6.73 13.64 -35.23 -0.48 -7.21 16 8 C -0.22 -3.37 6.24 -102.89 -0.64 -4.01 16 9 C 0.58 10.53 7.57 -12.53 -0.09 10.43 16 10 O -0.52 -11.36 14.25 5.25 0.07 -11.28 16 11 N -0.61 -10.99 5.46 -10.97 -0.06 -11.05 16 12 C -0.06 -1.43 6.90 -83.85 -0.58 -2.01 16 13 C -0.03 -0.82 10.85 -17.03 -0.18 -1.00 16 14 N -0.26 -7.45 10.40 30.80 0.32 -7.13 16 15 N -0.14 -3.79 3.74 -11.41 -0.04 -3.83 16 16 C -0.32 -8.43 10.25 -14.81 -0.15 -8.58 16 17 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 18 C 0.05 1.20 5.50 -17.51 -0.10 1.10 16 19 N -0.77 -21.19 11.81 55.50 0.66 -20.53 16 20 Si 0.93 18.60 29.55 -169.99 -5.02 13.58 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 22 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 24 C -0.08 -1.86 11.49 -16.39 -0.19 -2.05 16 25 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.10 0.92 8.11 -51.93 -0.42 0.50 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.39 2.66 9.12 45.56 0.42 3.07 16 31 H 0.40 6.04 8.81 -40.82 -0.36 5.68 16 32 H 0.18 4.48 5.91 -52.49 -0.31 4.17 16 33 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.15 2.83 8.06 -52.48 -0.42 2.41 16 LS Contribution 313.51 15.07 4.72 4.72 Total: -1.00 -34.85 313.51 -3.67 -38.52 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -2.33 Total: 11.44 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -2.13 Total: -4.25 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 1.29 Total: -47.03 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.20 Total: -16.97 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.58 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.85 -3.67 -38.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597840720.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.838 kcal (2) G-P(sol) polarization free energy of solvation -34.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds