Wall clock time and date at job start Tue Mar 31 2020 06:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.33510 * 126.83331 * 2 1 4 4 N 1.20655 * 113.15446 * 180.30246 * 3 2 1 5 5 C 1.30018 * 112.30695 * 359.71117 * 4 3 2 6 6 C 1.50701 * 127.33836 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.46909 * 270.03144 * 6 5 4 8 8 C 1.37361 * 126.83053 * 179.81561 * 2 1 3 9 9 C 1.47397 * 128.56144 * 0.02562 * 8 2 1 10 10 O 1.21629 * 120.00207 * 269.67214 * 9 8 2 11 11 N 1.34778 * 119.99777 * 89.67673 * 9 8 2 12 12 C 1.40561 * 119.99817 * 179.97438 * 11 9 8 13 13 C 1.40653 * 126.08354 * 0.02562 * 12 11 9 14 14 N 1.30913 * 108.39017 * 179.97438 * 13 12 11 15 15 N 1.40070 * 108.40443 * 0.02562 * 14 13 12 16 16 C 1.37322 * 126.06763 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00115 * 179.97438 * 16 15 14 18 18 C 1.38992 * 119.99736 * 359.95468 * 16 15 14 19 19 N 1.31287 * 120.00160 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99638 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47247 * 60.00051 * 20 18 16 22 22 H 1.48501 * 109.46671 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47077 * 299.99890 * 20 18 16 24 24 C 1.35685 * 126.08212 * 180.02562 * 12 11 9 25 25 H 1.08996 * 109.47604 * 270.18035 * 1 2 3 26 26 H 1.09007 * 109.46969 * 30.17936 * 1 2 3 27 27 H 1.09004 * 109.47246 * 150.17157 * 1 2 3 28 28 H 1.09003 * 109.46530 * 30.02949 * 6 5 4 29 29 H 1.08999 * 109.47088 * 150.02854 * 6 5 4 30 30 H 0.96704 * 113.99301 * 179.97438 * 7 6 5 31 31 H 0.96996 * 119.99936 * 0.02562 * 11 9 8 32 32 H 1.07994 * 125.80645 * 0.02562 * 13 12 11 33 33 H 0.96999 * 120.00429 * 179.97438 * 19 18 16 34 34 H 1.08005 * 126.24733 * 359.75097 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3073 1.0686 0.0000 4 7 3.4796 0.7833 -0.0059 5 6 3.6747 -0.5022 -0.0047 6 6 4.9964 -1.2261 -0.0111 7 8 5.4066 -1.4567 -1.3604 8 6 2.3303 -1.0994 0.0035 9 6 1.9586 -2.5258 0.0076 10 8 1.8107 -3.1127 1.0626 11 7 1.7827 -3.1796 -1.1577 12 6 1.4287 -4.5399 -1.1539 13 6 1.2257 -5.3398 -0.0149 14 7 0.9091 -6.5473 -0.4093 15 7 0.8981 -6.5664 -1.8099 16 6 0.6113 -7.6513 -2.6014 17 1 0.6313 -7.5554 -3.6769 18 6 0.2956 -8.8728 -2.0183 19 7 0.2712 -8.9894 -0.7108 20 14 -0.0938 -10.3488 -3.0951 21 1 1.0755 -10.6545 -3.9578 22 1 -0.3962 -11.5219 -2.2363 23 1 -1.2710 -10.0431 -3.9471 24 6 1.2221 -5.3150 -2.2482 25 1 -0.3634 0.0032 1.0276 26 1 -0.3633 0.8884 -0.5167 27 1 -0.3634 -0.8915 -0.5112 28 1 5.7454 -0.6193 0.4977 29 1 4.8904 -2.1805 0.5046 30 1 6.2519 -1.9195 -1.4408 31 1 1.9011 -2.7116 -1.9991 32 1 1.3148 -5.0132 1.0106 33 1 0.0506 -9.8418 -0.3039 34 1 1.2960 -4.9984 -3.2782 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597840720.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:14 Heat of formation + Delta-G solvation = 37.622770 kcal Electronic energy + Delta-G solvation = -22602.685443 eV Core-core repulsion = 18926.361579 eV Total energy + Delta-G solvation = -3676.323864 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.05320 -41.73364 -40.21969 -38.08634 -35.97549 -35.20272 -34.78472 -34.47113 -32.24623 -29.94106 -28.93884 -28.43188 -26.95472 -25.37508 -22.93700 -22.23540 -21.33574 -21.05937 -19.53099 -19.09748 -18.79878 -18.30954 -17.55892 -17.34131 -16.94281 -16.21381 -16.02691 -15.67316 -15.54661 -15.07846 -15.00937 -14.78141 -14.26864 -14.10435 -13.63292 -13.47191 -13.33346 -13.09365 -12.88277 -12.87125 -12.42858 -12.12841 -11.89522 -11.44426 -11.22496 -11.07486 -11.02288 -10.81705 -10.46523 -10.10763 -8.58299 -8.46374 -6.24366 0.20867 0.60628 1.05104 1.41230 1.41777 1.57699 1.69320 1.83295 2.08577 2.29221 2.44457 2.72780 2.93318 3.09330 3.12898 3.68636 3.76445 3.89512 4.05360 4.23326 4.39681 4.43098 4.56067 4.58615 4.63267 4.72140 5.00121 5.04763 5.07553 5.27363 5.36943 5.94996 6.27975 6.59048 6.70326 6.72406 7.03912 7.20089 7.44886 7.66479 8.52638 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028422 B = 0.003532 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.916646 B = 7925.199725 C = 8316.407880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.039 3.961 3 O 0.108 5.892 4 N -0.352 5.352 5 C 0.042 3.958 6 C 0.155 3.845 7 O -0.579 6.579 8 C -0.257 4.257 9 C 0.591 3.409 10 O -0.561 6.561 11 N -0.596 5.596 12 C -0.048 4.048 13 C -0.054 4.054 14 N -0.308 5.308 15 N -0.164 5.164 16 C -0.355 4.355 17 H 0.141 0.859 18 C -0.004 4.004 19 N -0.823 5.823 20 Si 1.018 2.982 21 H -0.254 1.254 22 H -0.278 1.278 23 H -0.253 1.253 24 C -0.075 4.075 25 H 0.109 0.891 26 H 0.124 0.876 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.409 0.591 31 H 0.418 0.582 32 H 0.169 0.831 33 H 0.277 0.723 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.530 15.296 -3.692 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.024 4.024 3 O 0.044 5.956 4 N -0.057 5.057 5 C -0.120 4.120 6 C 0.077 3.923 7 O -0.388 6.388 8 C -0.265 4.265 9 C 0.377 3.623 10 O -0.440 6.440 11 N -0.239 5.239 12 C -0.154 4.154 13 C -0.229 4.229 14 N -0.140 5.140 15 N 0.067 4.933 16 C -0.486 4.486 17 H 0.159 0.841 18 C -0.216 4.216 19 N -0.451 5.451 20 Si 0.837 3.163 21 H -0.178 1.178 22 H -0.203 1.203 23 H -0.177 1.177 24 C -0.226 4.226 25 H 0.127 0.873 26 H 0.143 0.857 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.261 0.739 31 H 0.255 0.745 32 H 0.185 0.815 33 H 0.087 0.913 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.358 14.908 -2.546 15.492 hybrid contribution 0.506 -0.695 -0.425 0.959 sum 3.864 14.213 -2.970 15.025 Atomic orbital electron populations 1.20732 0.80235 1.06590 1.06173 1.25187 0.97190 0.83819 0.96223 1.84520 1.10803 1.32980 1.67311 1.73564 0.96696 1.16397 1.19075 1.24665 0.96003 0.89061 1.02284 1.20202 0.88910 0.98101 0.85107 1.86428 1.45543 1.81964 1.24858 1.21678 0.93651 0.94240 1.16918 1.16926 0.77639 0.84447 0.83324 1.90712 1.52501 1.68235 1.32528 1.42310 1.65527 1.07348 1.08754 1.17261 1.19629 0.85350 0.93111 1.24152 1.07843 0.91503 0.99410 1.78174 1.26888 1.19035 0.89932 1.44835 1.37815 1.06729 1.03912 1.20603 1.49505 0.86999 0.91464 0.84129 1.26852 0.94647 1.02616 0.97470 1.70379 1.36388 1.26614 1.11685 0.84663 0.79872 0.74548 0.77209 1.17794 1.20326 1.17712 1.21955 1.15617 0.86169 0.98860 0.87266 0.85728 0.89015 0.88936 0.91222 0.73881 0.74547 0.81465 0.91336 0.79589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.33 71.23 0.74 -0.46 16 2 C 0.04 0.89 7.55 25.48 0.19 1.08 16 3 O 0.11 2.55 11.06 76.84 0.85 3.40 16 4 N -0.35 -9.50 12.01 -44.76 -0.54 -10.04 16 5 C 0.04 1.17 7.22 45.16 0.33 1.50 16 6 C 0.16 3.59 7.65 71.24 0.55 4.14 16 7 O -0.58 -12.93 13.64 -148.98 -2.03 -14.97 16 8 C -0.26 -7.46 6.24 -18.74 -0.12 -7.58 16 9 C 0.59 21.26 7.57 86.65 0.66 21.92 16 10 O -0.56 -24.81 14.25 -4.12 -0.06 -24.87 16 11 N -0.60 -21.05 5.46 -306.88 -1.68 -22.72 16 12 C -0.05 -2.15 6.90 37.74 0.26 -1.89 16 13 C -0.05 -2.88 10.85 85.42 0.93 -1.96 16 14 N -0.31 -18.30 10.40 -56.46 -0.59 -18.88 16 15 N -0.16 -8.96 3.74 -190.00 -0.71 -9.67 16 16 C -0.35 -18.43 10.25 84.01 0.86 -17.57 16 17 H 0.14 6.30 7.83 -2.91 -0.02 6.27 16 18 C 0.00 -0.20 5.50 84.95 0.47 0.27 16 19 N -0.82 -46.78 11.81 21.66 0.26 -46.53 16 20 Si 1.02 37.77 29.55 68.60 2.03 39.80 16 21 H -0.25 -8.81 7.11 99.48 0.71 -8.11 16 22 H -0.28 -10.26 7.11 99.48 0.71 -9.56 16 23 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 24 C -0.08 -3.43 11.49 83.38 0.96 -2.47 16 25 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.09 1.54 8.11 -2.38 -0.02 1.52 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.41 4.94 9.12 -74.05 -0.68 4.26 16 31 H 0.42 11.78 8.81 -92.71 -0.82 10.97 16 32 H 0.17 9.04 5.91 -2.91 -0.02 9.02 16 33 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.19 6.68 8.06 -2.91 -0.02 6.66 16 Total: -1.00 -78.08 313.51 3.04 -75.04 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: -0.30 Total: 32.46 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 5.81 Total: -3.02 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -3.25 Total: -107.84 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.24 Total: -36.43 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -78.08 3.04 -75.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597840720.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.659 kcal (2) G-P(sol) polarization free energy of solvation -78.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds