Wall clock time and date at job start Tue Mar 31 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39689 * 120.16662 * 250.48640 * 3 2 1 5 5 C 1.37875 * 119.86602 * 179.74952 * 4 3 2 6 6 C 1.38439 * 120.21789 * 0.53194 * 5 4 3 7 7 C 1.50702 * 119.82695 * 179.72140 * 6 5 4 8 8 N 1.46496 * 109.47269 * 276.61300 * 7 6 5 9 9 C 1.36933 * 120.00433 * 95.78023 * 8 7 6 10 10 H 1.08001 * 120.00265 * 221.45206 * 9 8 7 11 11 C 1.38813 * 119.99987 * 41.45755 * 9 8 7 12 12 N 1.31620 * 119.99626 * 17.78826 * 11 9 8 13 13 Si 1.86798 * 119.99971 * 197.78951 * 11 9 8 14 14 H 1.48498 * 109.46940 * 89.99974 * 13 11 9 15 15 H 1.48501 * 109.46978 * 209.99951 * 13 11 9 16 16 H 1.48499 * 109.47354 * 329.99745 * 13 11 9 17 17 C 1.46507 * 119.99772 * 275.78294 * 8 7 6 18 18 C 1.52998 * 109.47183 * 89.99741 * 17 8 7 19 19 C 1.50702 * 109.47592 * 180.02562 * 18 17 8 20 20 O 1.20826 * 119.99544 * 359.97438 * 19 18 17 21 21 O 1.34223 * 120.00223 * 180.02562 * 19 18 17 22 22 C 1.38232 * 120.35208 * 359.74358 * 6 5 4 23 23 C 1.38282 * 120.11979 * 359.97438 * 22 6 5 24 24 F 1.35095 * 120.11266 * 179.97438 * 23 22 6 25 25 H 1.08000 * 120.06762 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.88683 * 180.25634 * 5 4 3 27 27 H 1.09007 * 109.46979 * 36.60562 * 7 6 5 28 28 H 1.08998 * 109.47480 * 156.60552 * 7 6 5 29 29 H 0.97003 * 119.99210 * 180.02562 * 12 11 9 30 30 H 1.08995 * 109.47162 * 209.99756 * 17 8 7 31 31 H 1.09000 * 109.46699 * 330.00132 * 17 8 7 32 32 H 1.09005 * 109.47420 * 300.00510 * 18 17 8 33 33 H 1.09006 * 109.47383 * 60.00002 * 18 17 8 34 34 H 0.96698 * 117.00064 * 180.02562 * 21 19 18 35 35 H 1.07995 * 119.94367 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 0.4044 1.1383 5 6 4.6485 0.3976 1.1333 6 6 5.3392 0.0027 0.0004 7 6 6.8462 0.0047 0.0024 8 7 7.3332 1.3531 -0.2990 9 6 7.6715 2.2027 0.7202 10 1 7.3929 3.2449 0.6695 11 6 8.3727 1.7244 1.8187 12 7 9.0124 0.5767 1.7421 13 14 8.4081 2.7096 3.4053 14 1 7.2697 2.3013 4.2670 15 1 9.6853 2.4537 4.1184 16 1 8.2976 4.1569 3.0919 17 6 7.4582 1.7926 -1.6909 18 6 6.1479 2.4424 -2.1402 19 6 6.2762 2.8939 -3.5723 20 8 7.3098 2.7149 -4.1718 21 8 5.2426 3.4959 -4.1813 22 6 4.6539 -0.3931 -1.1330 23 6 3.2711 -0.3974 -1.1417 24 9 2.6015 -0.7838 -2.2496 25 1 2.7335 0.7169 2.0221 26 1 5.1914 0.7058 2.0146 27 1 7.2086 -0.3015 0.9839 28 1 7.2116 -0.6909 -0.7530 29 1 9.5021 0.2424 2.5099 30 1 8.2691 2.5164 -1.7720 31 1 7.6736 0.9329 -2.3254 32 1 5.3369 1.7186 -2.0591 33 1 5.9324 3.3021 -1.5057 34 1 5.3722 3.7675 -5.1003 35 1 5.1994 -0.6996 -2.0133 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:11 Heat of formation + Delta-G solvation = -69.435681 kcal Electronic energy + Delta-G solvation = -22922.393497 eV Core-core repulsion = 19221.507269 eV Total energy + Delta-G solvation = -3700.886228 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.88153 -39.95119 -39.13264 -36.70853 -36.04775 -35.58947 -32.32170 -31.89392 -30.49516 -29.64229 -26.46631 -24.98284 -22.82008 -22.61475 -21.22762 -20.13370 -18.95673 -17.85969 -17.17704 -16.70884 -16.28494 -16.05804 -15.73415 -15.60720 -14.87540 -14.47588 -14.06972 -13.89779 -13.65486 -13.59720 -13.28297 -13.18242 -12.76715 -12.67199 -12.61533 -11.98465 -11.78866 -11.45997 -11.37229 -11.27799 -11.03045 -10.93035 -10.74047 -10.41689 -10.31181 -10.24791 -10.07922 -8.78102 -8.74528 -8.43242 -6.89968 -6.11451 -3.71696 0.84651 1.38256 2.50778 2.69776 3.04835 3.19639 3.28934 3.29901 3.37566 3.90585 3.93555 4.23048 4.27019 4.88467 5.05284 5.24148 5.32959 5.43371 5.49933 5.54956 5.60203 5.87702 5.91704 6.05604 6.11803 6.23097 6.40137 6.45412 6.51569 6.68176 6.85881 6.95816 7.01134 7.24520 7.52868 7.57454 8.14419 8.24610 8.86650 9.44640 10.04442 10.91228 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.006746 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.069972 B = 4149.677368 C = 5978.540699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.266 3.734 3 C -0.095 4.095 4 C -0.044 4.044 5 C -0.111 4.111 6 C -0.017 4.017 7 C 0.171 3.829 8 N -0.566 5.566 9 C -0.270 4.270 10 H 0.064 0.936 11 C 0.023 3.977 12 N -0.877 5.877 13 Si 0.899 3.101 14 H -0.282 1.282 15 H -0.289 1.289 16 H -0.275 1.275 17 C 0.159 3.841 18 C -0.140 4.140 19 C 0.479 3.521 20 O -0.521 6.521 21 O -0.524 6.524 22 C -0.164 4.164 23 C 0.141 3.859 24 F -0.137 7.137 25 H 0.134 0.866 26 H 0.142 0.858 27 H 0.109 0.891 28 H 0.045 0.955 29 H 0.261 0.739 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.401 0.599 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.095 -0.205 -3.903 7.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.049 4.049 3 C -0.100 4.100 4 C -0.065 4.065 5 C -0.130 4.130 6 C -0.022 4.022 7 C 0.045 3.955 8 N -0.283 5.283 9 C -0.400 4.400 10 H 0.082 0.918 11 C -0.180 4.180 12 N -0.516 5.516 13 Si 0.728 3.272 14 H -0.208 1.208 15 H -0.215 1.215 16 H -0.200 1.200 17 C 0.032 3.968 18 C -0.180 4.180 19 C 0.322 3.678 20 O -0.410 6.410 21 O -0.336 6.336 22 C -0.184 4.184 23 C 0.119 3.881 24 F -0.116 7.116 25 H 0.152 0.848 26 H 0.160 0.840 27 H 0.126 0.874 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.258 0.742 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.441 -0.477 -3.561 8.263 hybrid contribution 0.233 0.682 -0.046 0.722 sum -7.208 0.205 -3.607 8.062 Atomic orbital electron populations 1.81186 1.12001 1.09845 1.07634 1.25515 0.92486 0.93265 0.93623 1.15854 0.84431 1.13333 0.96365 1.21071 0.94489 0.95395 0.95527 1.21171 0.92458 0.99579 0.99771 1.21578 1.00828 0.89102 0.90705 1.20203 0.83607 0.87571 1.04129 1.43689 1.71677 1.12670 1.00279 1.19057 1.30366 0.92507 0.98047 0.91793 1.25345 0.95152 0.97210 1.00272 1.69992 1.30561 1.20945 1.30122 0.86358 0.77423 0.80225 0.83207 1.20807 1.21469 1.19980 1.20733 0.92006 0.97906 0.86116 1.22436 1.05179 1.03440 0.86979 1.24082 0.80148 0.73121 0.90463 1.90687 1.30040 1.53197 1.67029 1.84624 1.44509 1.71981 1.32444 1.21052 0.90813 1.05613 1.00921 1.17649 0.90149 0.98529 0.81796 1.91499 1.80787 1.88417 1.50879 0.84786 0.84049 0.87360 0.93626 0.92934 0.91728 0.93427 0.88417 0.87963 0.74165 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.08 18.54 41.84 0.78 -6.30 16 2 C 0.27 3.96 14.98 -22.47 -0.34 3.62 16 3 C -0.09 -1.30 5.74 -106.82 -0.61 -1.92 16 4 C -0.04 -0.56 9.76 -39.17 -0.38 -0.95 16 5 C -0.11 -1.61 9.70 -39.64 -0.38 -1.99 16 6 C -0.02 -0.27 4.94 -104.55 -0.52 -0.78 16 7 C 0.17 3.15 5.37 -5.19 -0.03 3.12 16 8 N -0.57 -11.47 2.39 -174.61 -0.42 -11.88 16 9 C -0.27 -6.14 9.44 -15.06 -0.14 -6.28 16 10 H 0.06 1.47 7.89 -52.49 -0.41 1.05 16 11 C 0.02 0.53 4.95 -17.43 -0.09 0.45 16 12 N -0.88 -21.66 11.62 55.49 0.64 -21.02 16 13 Si 0.90 18.66 29.59 -169.99 -5.03 13.63 16 14 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 15 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 C 0.16 2.93 4.99 -4.04 -0.02 2.91 16 18 C -0.14 -2.19 6.00 -27.88 -0.17 -2.36 16 19 C 0.48 7.28 8.33 36.01 0.30 7.58 16 20 O -0.52 -9.29 16.74 -18.75 -0.31 -9.60 16 21 O -0.52 -6.49 13.42 -39.24 -0.53 -7.02 16 22 C -0.16 -2.29 7.72 -39.57 -0.31 -2.60 16 23 C 0.14 1.98 7.28 -38.96 -0.28 1.70 16 24 F -0.14 -2.02 16.81 2.25 0.04 -1.98 16 25 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 26 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 27 H 0.11 2.28 5.76 -51.93 -0.30 1.98 16 28 H 0.05 0.81 7.87 -51.93 -0.41 0.40 16 29 H 0.26 6.27 8.31 -40.82 -0.34 5.93 16 30 H 0.06 1.30 8.00 -51.93 -0.42 0.88 16 31 H 0.05 0.86 7.91 -51.93 -0.41 0.45 16 32 H 0.10 1.47 5.61 -51.93 -0.29 1.18 16 33 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.40 3.14 9.10 45.56 0.41 3.55 16 35 H 0.14 1.77 8.05 -52.49 -0.42 1.35 16 LS Contribution 322.38 15.07 4.86 4.86 Total: -1.00 -27.00 322.38 -5.59 -32.59 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -2.65 Total: 4.22 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -2.97 Total: 2.51 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 1.00 Total: -39.21 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.84 Total: -16.62 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.00 -5.59 -32.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.850 kcal (2) G-P(sol) polarization free energy of solvation -26.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds